Rroxscaffold_3G00233800

clathrin assembly

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000003
OG0014227
Physical Location & Seq
Reverse (-)
20088693 .. 20091063
2371 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_3G00233800.1

Sequence Viewer

Length: 1737 bp
ATGGCTTCAAGCAAATTCAGAAGAGCCTTAGGTGCCGTGAAGGACCAAACTAGCATTGGCCTTGCCAAAGTTGGCAGCAGCAATTCTCTAGCGGACCTCGACGTTGCCATTGTAAAGGCTACGAGGCACGAAGAATGGCCAACCGAAGAGAAATACATCAGAGAGATTCTTAGCTTGACATGCTACTCACGCGCATACATCAGTGCCTGTGTCAACACCATCTCCAGGCGCCTCAACAAGACCAAGAACTGGATTGTCGCCCTCAAAACCCTCATGTTGATCCAACGGCTGCTATCAGAGGGTGATCCTGCGTATGAACAAGAGATATTCTTCTCCACTAGGCGCGGGACTCGGTTTCTCAACATGTCCGATTTTAGGGATACTTCGGGCTCCTATACATGGGACTACTCTGCGTTTGTGCGCACATATGCATTGTACCTAGACGAACGGCTGGAGTTTCGAATGCAAAGCCGGCGTGGGAAACGCAGTGTGTTCGGAATAGATGAGGAGGAGGATTCGGATCCAAACCAGCAAGCGGGTACTAGGACCACACCTGTGCATGAGATGAGGCACGATAAGTTGTTCTCAAGGATGCAACATCTGCAGCAGCTCCTTGAGCGATTTCTAGCGACACGTCCAACAGGTGAAGCAAAGAACAACAGGGTTATAATAGTGGCTCTTTACCCGCTAGTGAAAGAGAGTTTCCAGATATATTACGACATAACAGAGATAATGGGACTCTTTATCGACCGCTTCATGGACCTGGAGGTCCCCGACGGTGTCAAAGTATACGAAGTATTCGTTCGCATCGGAAAGCAATTCGACGAGCTGGACGTGTTCTACAGCTGGTGTAAGAACGTCGGCATTGCACGCGCCTCCGAGTATCCGGAAGTCGAGAGAATCACACCGAAGAAGCTCGAAGTGATGGACGATTACATTCGAGACAAGTCGGCTTTGGCGCAAGGCCGGAAAGTAATTATGGCACTAGAGCCAAGAGGTGAATCCCCTGTGTCGGAGGAGTCCAAAGAAGAACCGGATATGAACTCCATTAGAGCCCTTCCACCGCCAGAAGACTTCGTGGAGGCTCCGGTGGAGGAAGAGAAGGAAGAAGAACCGATTGTCGAGAAAGAGGAACCCAAAAAACAAGACGTGGGTGATTTGTTGAACTTGGGAGAAGACACAGGCTCCAGTGAAGAGAAAGGGTTCCGCAACCTCCACCGCTGGTCCGCAACCGTGGGAGGCTTTTTCAGAGGAAGCGGATTGGGAAACGGCTCTTGTCCAATCTGCAACCCACTTGCCAAACCAGAAGGCCTCTCTCGGGGAGGATTCGACTTGTTGGTGCTGGATGGAATGTACCAACAAGGACAAGTTTCGGCGGCGATGGCTGGCCCCGGTTATGGAACCAGCGGTAGTGCAAGTAGCGTTGCATTGGGCTCTGCAGGAACCCCGGCCATGCTAGCATTGCCTGCGCCACCAACACAGACGGATGATAATGGTGATAGGTCTATGGTTGTTGGAACAACTCAGGCGGACCCATTTGCCGCCTCGATGGTGGTGCCGCCGCCGTCGTACGTGCAAATGTCGGATCTGGAGAAGAAGCAGAAGCTGTTGGTGGAAGAGCAGTTGATGTGGCACCAGTACGCAAGGGATGGGATGCAAGGGCATATTGGATTGACAAAGCTACAACATAACCCTCATTATCAACCAAACATGGGAGGTTACACTCACACTTACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
ANTH

Protein Analysis

578

Amino Acids

64.93

Weight (kDa)

5.36

Isoelectric Point (pI)

47.63

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ANTH PF07651 32 - 315 3.3e-88 ANTH domain
ENTH PF01417 34 - 109 3.7e-07 ENTH domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0014227)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G03050
fragaria_vesca FvH4_5g30570 FvH4_5g30590
malus_domestica MD08G1222400.v1.1 MD15G1415800.v1.1
prunus_persica Prupe.1G560200_v2.0.a1
pyrus_communis pycom15g36900
rosa_chinensis RchiOBHm_Chr7g0225461
rosa_laevigata RLG00000001817
rosa_multiflora Rmu_sc0000259.1_g000009
rosa_roxburghii Rroxscaffold_3G00233800
rosa_rugosa Rorug07G0229600.1
rosa_samantha Rh7AG373600 Rh7BG364300 Rh7CG391700 Rh7DG375500
rosa_wichuraiana Rw7G031680

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 668
AasI GACNNNNNNGTC 1 cut(s) 767
Acc16I TGCGCA 1 cut(s) 422
AccB1I GGYRCC 4 cut(s) 32, 228, 1555, 1632
AccB7I CCANNNNNTGG 1 cut(s) 249
AccI GTMKAC 1 cut(s) 789
AccII CGCG 3 cut(s) 192, 345, 873
AccIII TCCGGA 1 cut(s) 886
AclWI GGATC 5 cut(s) 274, 299, 515, 528, 1593
AcoI YGGCCR 2 cut(s) 137, 1449
AcsI RAATTY 1 cut(s) 14
AcyI GRCGYC 1 cut(s) 229
AfaI GTAC 5 cut(s) 437, 541, 1355, 1571, 1640
AflIII ACRYGT 3 cut(s) 363, 632, 834
AgsI TTSAA 2 cut(s) 9, 1165
AjiI CACGTC 3 cut(s) 635, 835, 1150
AjnI CCWGG 2 cut(s) 224, 762
AleI CACNNNNGTG 1 cut(s) 554
AluBI AGCT 7 cut(s) 174, 610, 829, 846, 916, 1606, 1681
AluI AGCT 7 cut(s) 174, 610, 829, 846, 916, 1606, 1681
Alw26I GTCTC 1 cut(s) 936
AlwI GGATC 5 cut(s) 274, 299, 515, 528, 1593
AlwNI CAGNNNCTG 2 cut(s) 207, 1606
Ama87I CYCGRG 1 cut(s) 1317
Aor13HI TCCGGA 1 cut(s) 886
AoxI GGCC 6 cut(s) 58, 137, 964, 1309, 1387, 1449
ApeKI GCWGC 5 cut(s) 75, 78, 289, 604, 607
ApoI RAATTY 1 cut(s) 14
Asp700I GAANNNNTTC 1 cut(s) 1202
AspLEI GCGC 7 cut(s) 194, 231, 345, 423, 875, 961, 1471
AspS9I GGNCC 8 cut(s) 43, 94, 546, 760, 769, 1224, 1388, 1531
AsuC2I CCSGG 2 cut(s) 1392, 1448
AsuHPI GGTGA 5 cut(s) 314, 656, 1010, 1166, 1508
AsuII TTCGAA 1 cut(s) 460
AsuNHI GCTAGC 1 cut(s) 1456
AvaI CYCGRG 1 cut(s) 1317
AvaII GGWCC 7 cut(s) 43, 94, 546, 760, 769, 1224, 1531
AxyI CCTNAGG 1 cut(s) 28
BalI TGGCCA 1 cut(s) 139
BamHI GGATCC 1 cut(s) 520
BanI GGYRCC 4 cut(s) 32, 228, 1555, 1632
BanII GRGCYC 3 cut(s) 392, 1057, 1436
BbsI GAAGAC 2 cut(s) 1077, 1182
BbvI GCAGC 5 cut(s) 87, 90, 276, 616, 619
BccI CCATC 6 cut(s) 227, 919, 1340, 1375, 1543, 1643
BceAI ACGGC 5 cut(s) 20, 302, 464, 1285, 1549
BcgI CGANNNNNNTGC 4 cut(s) 475, 509, 1537, 1571
BciT130I CCWGG 2 cut(s) 226, 764
BciVI GTATCC 2 cut(s) 373, 894
BcnI CCSGG 2 cut(s) 1392, 1448
BcoDI GTCTC 1 cut(s) 936
BfaI CTAG 9 cut(s) 51, 89, 339, 440, 543, 626, 689, 986, 1457
BfmI CTRYAG 3 cut(s) 602, 841, 1437
BfoI RGCGCY 1 cut(s) 232
BfuI GTATCC 2 cut(s) 373, 894
BisI GCNGC 9 cut(s) 76, 79, 290, 605, 608, 1377, 1542, 1559, 1562
BlsI GCNGC 9 cut(s) 77, 80, 291, 606, 609, 1378, 1543, 1560, 1563
Bme1390I CCNGG 4 cut(s) 226, 764, 1392, 1448
Bme18I GGWCC 7 cut(s) 43, 94, 546, 760, 769, 1224, 1531
BmeT110I CYCGRG 1 cut(s) 1317
BmgBI CACGTC 3 cut(s) 635, 835, 1150
BmgT120I GGNCC 8 cut(s) 43, 94, 546, 760, 769, 1224, 1388, 1531
BmrFI CCNGG 4 cut(s) 226, 764, 1392, 1448
BmsI GCATC 3 cut(s) 582, 816, 1644
BmtI GCTAGC 1 cut(s) 1460
BpiI GAAGAC 2 cut(s) 1077, 1182
BpmI CTGGAG 5 cut(s) 208, 473, 785, 1171, 1610
Bpu14I TTCGAA 1 cut(s) 460
BpuEI CTTGAG 2 cut(s) 571, 635
BpuMI CCSGG 2 cut(s) 1392, 1448
BsaAI YACGTR 1 cut(s) 1573
BsaBI GATNNNNATC 1 cut(s) 519
BsaHI GRCGYC 1 cut(s) 229
BsaJI CCNNGG 3 cut(s) 1233, 1390, 1446
BsaWI WCCGGW 3 cut(s) 886, 1033, 1087
BsaXI ACNNNNNCTCC 4 cut(s) 206, 236, 1169, 1199
Bse118I RCCGGY 1 cut(s) 471
Bse1I ACTGG 3 cut(s) 254, 1188, 1636
Bse21I CCTNAGG 1 cut(s) 28
Bse3DI GCAATG 2 cut(s) 864, 1460
Bse8I GATNNNNATC 1 cut(s) 519
BseAI TCCGGA 1 cut(s) 886
BseBI CCWGG 2 cut(s) 226, 764
BseDI CCNNGG 3 cut(s) 1233, 1390, 1446
BseGI GGATG 5 cut(s) 597, 1351, 1492, 1654, 1659
BseJI GATNNNNATC 1 cut(s) 519
BseMI GCAATG 2 cut(s) 864, 1460
BseMII CTCAG 1 cut(s) 1538
BseNI ACTGG 3 cut(s) 254, 1188, 1636
BseRI GAGGAG 3 cut(s) 521, 524, 1031
BseXI GCAGC 5 cut(s) 87, 90, 276, 616, 619
Bsh1236I CGCG 3 cut(s) 192, 345, 873
Bsh1285I CGRYCG 1 cut(s) 751
BshFI GGCC 6 cut(s) 60, 139, 966, 1311, 1389, 1451
BshNI GGYRCC 4 cut(s) 32, 228, 1555, 1632
BsiEI CGRYCG 1 cut(s) 751
BsiHKCI CYCGRG 1 cut(s) 1317
BsiSI CCGG 7 cut(s) 472, 887, 967, 1034, 1088, 1392, 1448
BsiWI CGTACG 1 cut(s) 1569
BslFI GGGAC 4 cut(s) 361, 416, 750, 755
BsmAI GTCTC 1 cut(s) 936
BsmFI GGGAC 4 cut(s) 361, 416, 750, 755
BsmI GAATGC 1 cut(s) 468
BsnI GGCC 6 cut(s) 60, 139, 966, 1311, 1389, 1451
BsoBI CYCGRG 1 cut(s) 1317
Bsp119I TTCGAA 1 cut(s) 460
Bsp1286I GDGCHC 3 cut(s) 392, 1057, 1436
Bsp13I TCCGGA 1 cut(s) 886
Bsp143I GATC 4 cut(s) 279, 304, 520, 1585
BspANI GGCC 6 cut(s) 60, 139, 966, 1311, 1389, 1451
BspCNI CTCAG 1 cut(s) 1537
BspEI TCCGGA 1 cut(s) 886
BspFNI CGCG 3 cut(s) 192, 345, 873
BspMAI CTGCAG 2 cut(s) 606, 1441
BspOI GCTAGC 1 cut(s) 1460
BspPI GGATC 5 cut(s) 274, 299, 515, 528, 1593
BspQI GCTCTTC 2 cut(s) 16, 1611
BspT104I TTCGAA 1 cut(s) 460
BspT107I GGYRCC 4 cut(s) 32, 228, 1555, 1632
BsrDI GCAATG 2 cut(s) 864, 1460
BsrFI RCCGGY 1 cut(s) 471
BsrI ACTGG 3 cut(s) 254, 1188, 1636
BssAI RCCGGY 1 cut(s) 471
BssECI CCNNGG 3 cut(s) 1233, 1390, 1446
BssMI GATC 4 cut(s) 279, 304, 520, 1585
BssNAI GTATAC 1 cut(s) 790
BssNI GRCGYC 1 cut(s) 229
Bst1107I GTATAC 1 cut(s) 790
Bst2UI CCWGG 2 cut(s) 226, 764
Bst4CI ACNGT 2 cut(s) 779, 1234
Bst6I CTCTTC 5 cut(s) 16, 141, 1092, 1188, 1611
BstACI GRCGYC 1 cut(s) 229
BstAPI GCANNNNNTGC 2 cut(s) 601, 1466
BstBAI YACGTR 1 cut(s) 1573
BstBI TTCGAA 1 cut(s) 460
BstC8I GCNNGC 6 cut(s) 473, 534, 871, 1387, 1458, 1467
BstDEI CTNAG 3 cut(s) 28, 170, 1524
BstDSI CCRYGG 1 cut(s) 1233
BstF5I GGATG 5 cut(s) 597, 1351, 1492, 1654, 1659
BstFNI CGCG 3 cut(s) 192, 345, 873
BstH2I RGCGCY 1 cut(s) 232
BstHHI GCGC 7 cut(s) 194, 231, 345, 423, 875, 961, 1471
BstKTI GATC 4 cut(s) 282, 307, 523, 1588
BstMAI GTCTC 1 cut(s) 936
BstMBI GATC 4 cut(s) 279, 304, 520, 1585
BstMCI CGRYCG 1 cut(s) 751
BstNI CCWGG 2 cut(s) 226, 764
BstNSI RCATGY 2 cut(s) 183, 367
BstSCI CCNGG 4 cut(s) 224, 762, 1390, 1446
BstSFI CTRYAG 3 cut(s) 602, 841, 1437
BstUI CGCG 3 cut(s) 192, 345, 873
BstV1I GCAGC 5 cut(s) 87, 90, 276, 616, 619
BstV2I GAAGAC 2 cut(s) 1077, 1182
BstX2I RGATCY 2 cut(s) 520, 1585
BstYI RGATCY 2 cut(s) 520, 1585
BstZ17I GTATAC 1 cut(s) 790
Bsu36I CCTNAGG 1 cut(s) 28
BsuI GTATCC 2 cut(s) 373, 894
BsuRI GGCC 6 cut(s) 60, 139, 966, 1311, 1389, 1451
BtgI CCRYGG 1 cut(s) 1233
BtgZI GCGATG 1 cut(s) 1394
BtrI CACGTC 3 cut(s) 635, 835, 1150
BtsCI GGATG 5 cut(s) 597, 1351, 1492, 1654, 1659
BtsI GCAGTG 1 cut(s) 493
BtsIMutI CAGTG 3 cut(s) 208, 493, 1195
Cac8I GCNNGC 6 cut(s) 473, 534, 871, 1387, 1458, 1467
CaiI CAGNNNCTG 2 cut(s) 207, 1606
CfoI GCGC 7 cut(s) 194, 231, 345, 423, 875, 961, 1471
Cfr10I RCCGGY 1 cut(s) 471
Cfr13I GGNCC 8 cut(s) 43, 94, 546, 760, 769, 1224, 1388, 1531
Csp6I GTAC 5 cut(s) 436, 540, 1354, 1570, 1639
CviAII CATG 8 cut(s) 180, 274, 364, 399, 560, 757, 1453, 1711
CviQI GTAC 5 cut(s) 436, 540, 1354, 1570, 1639
DdeI CTNAG 3 cut(s) 28, 170, 1524
DinI GGCGCC 1 cut(s) 230
DpnI GATC 4 cut(s) 281, 306, 522, 1587
DpnII GATC 4 cut(s) 279, 304, 520, 1585
DrdI GACNNNNNNGTC 1 cut(s) 767
DseDI GACNNNNNNGTC 1 cut(s) 767
EaeI YGGCCR 2 cut(s) 137, 1449
Eam1104I CTCTTC 5 cut(s) 16, 141, 1092, 1188, 1611
EarI CTCTTC 5 cut(s) 16, 141, 1092, 1188, 1611
EciI GGCGGA 1 cut(s) 1544
Eco147I AGGCCT 1 cut(s) 1311
Eco24I GRGCYC 3 cut(s) 392, 1057, 1436
Eco47I GGWCC 7 cut(s) 43, 94, 546, 760, 769, 1224, 1531
Eco81I CCTNAGG 1 cut(s) 28
Eco88I CYCGRG 1 cut(s) 1317
EcoO109I RGGNCCY 1 cut(s) 769
EcoRII CCWGG 2 cut(s) 224, 762
EcoT22I ATGCAT 1 cut(s) 433
EcoT38I GRGCYC 3 cut(s) 392, 1057, 1436
EgeI GGCGCC 1 cut(s) 230
EheI GGCGCC 1 cut(s) 230
FaeI CATG 8 cut(s) 183, 277, 367, 402, 563, 760, 1456, 1714
FaqI GGGAC 4 cut(s) 361, 416, 750, 755
FatI CATG 8 cut(s) 179, 273, 363, 398, 559, 756, 1452, 1710
FauI CCCGC 3 cut(s) 338, 529, 693
FauNDI CATATG 1 cut(s) 427
FblI GTMKAC 1 cut(s) 789
Fnu4HI GCNGC 9 cut(s) 76, 79, 290, 605, 608, 1377, 1542, 1559, 1562
FokI GGATG 5 cut(s) 604, 1358, 1499, 1661, 1666
FriOI GRGCYC 3 cut(s) 392, 1057, 1436
Fsp4HI GCNGC 9 cut(s) 76, 79, 290, 605, 608, 1377, 1542, 1559, 1562
FspAI RTGCGCAY 1 cut(s) 422
FspBI CTAG 9 cut(s) 51, 89, 339, 440, 543, 626, 689, 986, 1457
FspI TGCGCA 1 cut(s) 422
GlaI GCGC 7 cut(s) 193, 230, 344, 422, 874, 960, 1470
GluI GCNGC 9 cut(s) 76, 79, 290, 605, 608, 1377, 1542, 1559, 1562
GsuI CTGGAG 5 cut(s) 208, 473, 785, 1171, 1610
HaeII RGCGCY 1 cut(s) 232
HaeIII GGCC 6 cut(s) 60, 139, 966, 1311, 1389, 1451
HapII CCGG 7 cut(s) 472, 887, 967, 1034, 1088, 1392, 1448
HhaI GCGC 7 cut(s) 194, 231, 345, 423, 875, 961, 1471
Hin1I GRCGYC 1 cut(s) 229
Hin1II CATG 8 cut(s) 183, 277, 367, 402, 563, 760, 1456, 1714
Hin6I GCGC 7 cut(s) 192, 229, 343, 421, 873, 959, 1469
HinP1I GCGC 7 cut(s) 192, 229, 343, 421, 873, 959, 1469
HincII GTYRAC 1 cut(s) 214
HindII GTYRAC 1 cut(s) 214
HinfI GANTC 8 cut(s) 166, 349, 515, 738, 900, 1001, 1019, 1326
HpaII CCGG 7 cut(s) 472, 887, 967, 1034, 1088, 1392, 1448
HphI GGTGA 5 cut(s) 314, 656, 1010, 1166, 1508
Hpy166II GTNNAC 2 cut(s) 214, 790
Hpy188III TCNNGA 6 cut(s) 706, 887, 895, 941, 1123, 1589
Hpy8I GTNNAC 2 cut(s) 214, 790
Hpy99I CGWCG 5 cut(s) 104, 779, 827, 863, 1570
HpyAV CCTTC 4 cut(s) 34, 1067, 1096, 1301
HpyCH4III ACNGT 2 cut(s) 779, 1234
HpyCH4IV ACGT 6 cut(s) 102, 634, 834, 858, 1149, 1572
HpyF3I CTNAG 3 cut(s) 28, 170, 1524
HpySE526I ACGT 6 cut(s) 102, 634, 834, 858, 1149, 1572
Hsp92I GRCGYC 1 cut(s) 229
Hsp92II CATG 8 cut(s) 183, 277, 367, 402, 563, 760, 1456, 1714
HspAI GCGC 7 cut(s) 192, 229, 343, 421, 873, 959, 1469
KasI GGCGCC 1 cut(s) 228
Kpn2I TCCGGA 1 cut(s) 886
KroI GCCGGC 1 cut(s) 471
KroNI GCCGGC 1 cut(s) 473
Kzo9I GATC 4 cut(s) 279, 304, 520, 1585
LguI GCTCTTC 2 cut(s) 16, 1611
LmnI GCTCC 4 cut(s) 395, 615, 1090, 1190
Lsp1109I GCAGC 5 cut(s) 87, 90, 276, 616, 619
LweI GCATC 3 cut(s) 582, 816, 1644
MaeI CTAG 9 cut(s) 51, 89, 339, 440, 543, 626, 689, 986, 1457
MaeII ACGT 6 cut(s) 102, 634, 834, 858, 1149, 1572
MaeIII GTNAC 1 cut(s) 1718
MalI GATC 4 cut(s) 281, 306, 522, 1587
MboI GATC 4 cut(s) 279, 304, 520, 1585
MflI RGATCY 2 cut(s) 520, 1585
MhlI GDGCHC 3 cut(s) 392, 1057, 1436
MlsI TGGCCA 1 cut(s) 139
MluCI AATT 4 cut(s) 14, 82, 818, 975
MluNI TGGCCA 1 cut(s) 139
Mly113I GGCGCC 1 cut(s) 229
MlyI GAGTC 3 cut(s) 343, 732, 1028
MmeI TCCRAC 5 cut(s) 307, 662, 993, 1495, 1563
Mox20I TGGCCA 1 cut(s) 139
Mph1103I ATGCAT 1 cut(s) 433
MroI TCCGGA 1 cut(s) 886
MroNI GCCGGC 1 cut(s) 471
MroXI GAANNNNTTC 1 cut(s) 1202
MscI TGGCCA 1 cut(s) 139
MslI CAYNNNNRTG 1 cut(s) 554
Msp20I TGGCCA 1 cut(s) 139
MspA1I CMGCKG 3 cut(s) 846, 1221, 1407
MspI CCGG 7 cut(s) 472, 887, 967, 1034, 1088, 1392, 1448
MspR9I CCNGG 4 cut(s) 226, 764, 1392, 1448
Mva1269I GAATGC 1 cut(s) 468
MvaI CCWGG 2 cut(s) 226, 764
MvnI CGCG 3 cut(s) 192, 345, 873
NaeI GCCGGC 1 cut(s) 473
NarI GGCGCC 1 cut(s) 229
NciI CCSGG 2 cut(s) 1392, 1448
NdeI CATATG 1 cut(s) 427
NdeII GATC 4 cut(s) 279, 304, 520, 1585
NgoMIV GCCGGC 1 cut(s) 471
NheI GCTAGC 1 cut(s) 1456
NlaIII CATG 8 cut(s) 183, 277, 367, 402, 563, 760, 1456, 1714
NsbI TGCGCA 1 cut(s) 422
NsiI ATGCAT 1 cut(s) 433
NspI RCATGY 2 cut(s) 183, 367
NspV TTCGAA 1 cut(s) 460
OliI CACNNNNGTG 1 cut(s) 554
PceI AGGCCT 1 cut(s) 1311
PciI ACATGT 1 cut(s) 363
PciSI GCTCTTC 2 cut(s) 16, 1611
PcsI WCGNNNNNNNCGW 2 cut(s) 798, 831
PctI GAATGC 1 cut(s) 468
PdiI GCCGGC 1 cut(s) 473
PdmI GAANNNNTTC 1 cut(s) 1202
PfeI GAWTC 5 cut(s) 166, 515, 900, 1001, 1326
Pfl23II CGTACG 1 cut(s) 1569
PflFI GACNNNGTC 1 cut(s) 779
PflMI CCANNNNNTGG 1 cut(s) 249
PkrI GCNGC 9 cut(s) 77, 80, 291, 606, 609, 1378, 1543, 1560, 1563
PleI GAGTC 3 cut(s) 343, 732, 1027
PluTI GGCGCC 1 cut(s) 232
PpsI GAGTC 3 cut(s) 343, 732, 1027
Ppu21I YACGTR 1 cut(s) 1573
PpuMI RGGWCCY 1 cut(s) 769
PscI ACATGT 1 cut(s) 363
PsiI TTATAA 1 cut(s) 668
Psp5II RGGWCCY 1 cut(s) 769
Psp6I CCWGG 2 cut(s) 224, 762
PspGI CCWGG 2 cut(s) 224, 762
PspLI CGTACG 1 cut(s) 1569
PspPI GGNCC 8 cut(s) 43, 94, 546, 760, 769, 1224, 1388, 1531
PspPPI RGGWCCY 1 cut(s) 769
PstI CTGCAG 2 cut(s) 606, 1441
PstNI CAGNNNCTG 2 cut(s) 207, 1606
PsuI RGATCY 2 cut(s) 520, 1585
PsyI GACNNNGTC 1 cut(s) 779
PvuII CAGCTG 1 cut(s) 846
RsaI GTAC 5 cut(s) 437, 541, 1355, 1571, 1640
RsaNI GTAC 5 cut(s) 436, 540, 1354, 1570, 1639
RseI CAYNNNNRTG 1 cut(s) 554
SapI GCTCTTC 2 cut(s) 16, 1611
SatI GCNGC 9 cut(s) 76, 79, 290, 605, 608, 1377, 1542, 1559, 1562
Sau3AI GATC 4 cut(s) 279, 304, 520, 1585
Sau96I GGNCC 8 cut(s) 43, 94, 546, 760, 769, 1224, 1388, 1531
SchI GAGTC 3 cut(s) 343, 732, 1028
ScrFI CCNGG 4 cut(s) 226, 764, 1392, 1448
SduI GDGCHC 3 cut(s) 392, 1057, 1436
SfaNI GCATC 3 cut(s) 582, 816, 1644
SfcI CTRYAG 3 cut(s) 602, 841, 1437
SfoI GGCGCC 1 cut(s) 230
SfuI TTCGAA 1 cut(s) 460
SinI GGWCC 7 cut(s) 43, 94, 546, 760, 769, 1224, 1531
SmiMI CAYNNNNRTG 1 cut(s) 554
SmlI CTYRAG 2 cut(s) 586, 614
SmoI CTYRAG 2 cut(s) 586, 614
Sse9I AATT 4 cut(s) 14, 82, 818, 975
SseBI AGGCCT 1 cut(s) 1311
SspDI GGCGCC 1 cut(s) 228
SspMI CTAG 9 cut(s) 51, 89, 339, 440, 543, 626, 689, 986, 1457
StuI AGGCCT 1 cut(s) 1311
StyD4I CCNGG 4 cut(s) 224, 762, 1390, 1446
TaaI ACNGT 2 cut(s) 779, 1234
TaiI ACGT 6 cut(s) 105, 637, 837, 861, 1152, 1575
TasI AATT 4 cut(s) 14, 82, 818, 975
TauI GCSGC 4 cut(s) 1379, 1544, 1561, 1564
TfiI GAWTC 5 cut(s) 166, 515, 900, 1001, 1326
TscAI CASTG 3 cut(s) 208, 493, 1195
TseI GCWGC 5 cut(s) 75, 78, 289, 604, 607
TspDTI ATGAA 3 cut(s) 330, 745, 1055
TspGWI ACGGA 1 cut(s) 1499
TspRI CASTG 3 cut(s) 208, 493, 1195
Tth111I GACNNNGTC 1 cut(s) 779
Van91I CCANNNNNTGG 1 cut(s) 249
VpaK11BI GGWCC 7 cut(s) 43, 94, 546, 760, 769, 1224, 1531
XapI RAATTY 1 cut(s) 14
XceI RCATGY 2 cut(s) 183, 367
XcmI CCANNNNNNNNNTGG 1 cut(s) 53
XmiI GTMKAC 1 cut(s) 789
XmnI GAANNNNTTC 1 cut(s) 1202
XspI CTAG 9 cut(s) 51, 89, 339, 440, 543, 626, 689, 986, 1457
Zsp2I ATGCAT 1 cut(s) 433
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.