RchiOBHm_Chr7g0225461

clathrin assembly

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
7
OG0014227
Physical Location & Seq
Forward (+)
48219264 .. 48222020
2757 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ20193

Sequence Viewer

Length: 1776 bp
ATGGCTTCAAGCAAATTCAGAAGAGCCTTGGGTGCCGTGAAGGACCAAACTAGCATTGGCCTTGCCAAAGTTGGCAGCAGCAATTCTCTAGCGGATCTAGACGTCGCCATTGTAAAGGCTACGAGGCACGAAGAATGGCCAACCGAAGAGAAATACATCAGAGAGATTCTTAGCTTGACTTGCTACTCACGCGCATACATCAGTGCCTGTGTCAACACCATCTCCAGGCGCCTCAACAAGACCAAGAACTGGATTGTCGCCCTCAAAACCCTCATGTTGATCCAACGGCTGCTATCCGAGGGTGATCCGGCGTATGAACAAGAGATATTCTTCTCCACGAGGCGCGGGACTCGGTTTCTCAACATGTCCGATTTTAGGGATACTTCGGGATCCAATACATGGGACTACTCTGCGTTTGTGCGCACATATGCATTGTACCTCGACGAACGGCTGGAGTTTCGAATGCAAAGCCGGCGTGGGAAACGCAGTGTGTTCGGAATAGATGAGGAGGAGGATTCGGATCCAAACCAGCAAGCGGGTACTAGGACCACACCCGTGCATGAGATGAGGCACGATAAGTTGTTCTCAAGGATGCAACATTTGCAGCAGCTCCTTGAGCGATTTCTAGCGACACGTCCAACAGGTGAAGCAAAGAACAACAGGGTTATAATAGTGGCTCTTTACCCGCTAGTGAAAGAGAGTTTCCAGATATATTACGACATAACAGAGATAATGGGACTCTTTATCGACCGCTTCATGGACCTGGAGGTCCCCGACGGTGTCAAAGTATACGAAGTATTCGTTCGCATCGGAAAGCAATTCGAAGAGCTGGACGTGTTCTACAGCTGGTGTAAGAACGTCGGCATTGCACGAGCCTCCGAGTACCCGGAAGTCGAGAGAATCACACCGAAGAAGCTCGAAGTGATGGACGATTACATTCGAGACAAGTCGGCTTTGGCGCAAGGCCGGAAAGTAATTATGGCGCTAGAGCCAAGAGGTGAATCCCCTGTGTCGGAGGAGTCCAAAGAAGAACCGGATATGAACTCCATTAAAGCCCTTCCACCGCCAGAAGACTTCGTGGAGGCTCCGGTGGAGGAAGAGAAGGAAGAAGAACCGATTGTCGAGAAAGAGGAACCCAAAAAACAAGACGTGGGTGATTTGTTGAACTTGGGAGAAGACGCCGGCTCTAGTGAAGAGAAATGTGACAAATTAGCGTTGGCATTATTCGATGGACCGGAGGGTTCCGCAACCTCCACCGCGGGTCCGCAACCGTGGGAGGCTTTTTCAGAGGAAGCGGATTGGGAAACGGCTCTTGTCCAATCTGCAACCCACTTGCCAAACCAGAAGGCCTCTCTCGGGGGAGGATTCGACTTGTTGGTGCTGGATGGAATGTACCAACAAGGACAAGTTTCGGCGGCGATGGCTGGCCCCGGTTATGGAACTAGCGGTAGTGCAAGTAGTGTCGCATTGGGCTCTGCAGGAACCCCGGCCATGCTAGCATTGCCTGCGCCACCATCACAGACGGATGATAATGTTGATAGGTCTATGGTTGTTGGAACAACGCAGGTGGACCCATTTGCAGCCTCGATGGTGGTGCCGCCGCCGTCGTACGTGCAAATGTCGGATCTGGAGAAGAAGCAGAAGCTGTTGGTGGAAGAACAGTTGATGTGGCACCAATACGCAAGGGATGGGATGCAAGGTCATATTGGATTGACAAAGCTGCAACATAACCCTCATTATCAACCAAACATGGGAGGTTACACTCACACTTACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
ANTH

Protein Analysis

591

Amino Acids

66.22

Weight (kDa)

4.99

Isoelectric Point (pI)

49.23

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ANTH PF07651 32 - 315 5.1e-89 ANTH domain
ENTH PF01417 34 - 144 1.5e-07 ENTH domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0014227)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G03050
fragaria_vesca FvH4_5g30570 FvH4_5g30590
malus_domestica MD08G1222400.v1.1 MD15G1415800.v1.1
prunus_persica Prupe.1G560200_v2.0.a1
pyrus_communis pycom15g36900
rosa_chinensis RchiOBHm_Chr7g0225461
rosa_laevigata RLG00000001817
rosa_multiflora Rmu_sc0000259.1_g000009
rosa_roxburghii Rroxscaffold_3G00233800
rosa_rugosa Rorug07G0229600.1
rosa_samantha Rh7AG373600 Rh7BG364300 Rh7CG391700 Rh7DG375500
rosa_wichuraiana Rw7G031680

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 668
AarI CACCTGC 1 cut(s) 1555
AasI GACNNNNNNGTC 1 cut(s) 767
AatII GACGTC 1 cut(s) 105
Acc16I TGCGCA 1 cut(s) 422
Acc36I ACCTGC 1 cut(s) 1555
AccB1I GGYRCC 4 cut(s) 32, 228, 1594, 1671
AccB7I CCANNNNNTGG 2 cut(s) 249, 399
AccI GTMKAC 1 cut(s) 789
AccII CGCG 3 cut(s) 192, 345, 1259
AclWI GGATC 8 cut(s) 102, 274, 299, 384, 397, 515, 528, 1632
AcoI YGGCCR 2 cut(s) 137, 1488
AcsI RAATTY 1 cut(s) 14
AcyI GRCGYC 3 cut(s) 102, 229, 1179
AfaI GTAC 5 cut(s) 437, 541, 884, 1394, 1610
AflIII ACRYGT 3 cut(s) 363, 632, 834
AgsI TTSAA 2 cut(s) 9, 1165
AjiI CACGTC 3 cut(s) 635, 835, 1150
AjnI CCWGG 2 cut(s) 224, 762
AleI CACNNNNGTG 1 cut(s) 554
AluBI AGCT 7 cut(s) 174, 610, 829, 846, 916, 1645, 1720
AluI AGCT 7 cut(s) 174, 610, 829, 846, 916, 1645, 1720
Alw26I GTCTC 1 cut(s) 936
AlwI GGATC 8 cut(s) 102, 274, 299, 384, 397, 515, 528, 1632
AlwNI CAGNNNCTG 2 cut(s) 207, 1645
Ama87I CYCGRG 1 cut(s) 1355
AoxI GGCC 6 cut(s) 58, 137, 964, 1347, 1426, 1488
ApeKI GCWGC 7 cut(s) 75, 78, 289, 604, 607, 1580, 1720
ApoI RAATTY 1 cut(s) 14
AspLEI GCGC 7 cut(s) 194, 231, 345, 423, 961, 985, 1510
AspS9I GGNCC 8 cut(s) 43, 546, 760, 769, 1232, 1262, 1427, 1570
AsuC2I CCSGG 3 cut(s) 887, 1431, 1487
AsuHPI GGTGA 4 cut(s) 314, 656, 1010, 1166
AsuII TTCGAA 2 cut(s) 460, 822
AsuNHI GCTAGC 1 cut(s) 1495
AvaI CYCGRG 1 cut(s) 1355
AvaII GGWCC 7 cut(s) 43, 546, 760, 769, 1232, 1262, 1570
BalI TGGCCA 1 cut(s) 139
BamHI GGATCC 2 cut(s) 389, 520
BanI GGYRCC 4 cut(s) 32, 228, 1594, 1671
BanII GRGCYC 1 cut(s) 1475
BauI CACGAG 2 cut(s) 337, 870
BbsI GAAGAC 2 cut(s) 1077, 1182
BbvI GCAGC 7 cut(s) 87, 90, 276, 616, 619, 1592, 1707
BccI CCATC 8 cut(s) 227, 919, 1223, 1379, 1414, 1522, 1582, 1682
BceAI ACGGC 5 cut(s) 20, 302, 464, 1323, 1588
BcgI CGANNNNNNTGC 4 cut(s) 475, 509, 1576, 1610
BciT130I CCWGG 2 cut(s) 226, 764
BciVI GTATCC 1 cut(s) 373
BcnI CCSGG 3 cut(s) 887, 1431, 1487
BcoDI GTCTC 1 cut(s) 936
BfmI CTRYAG 2 cut(s) 841, 1476
BfoI RGCGCY 2 cut(s) 232, 986
BfuAI ACCTGC 1 cut(s) 1555
BfuI GTATCC 1 cut(s) 373
Bme1390I CCNGG 5 cut(s) 226, 764, 887, 1431, 1487
Bme18I GGWCC 7 cut(s) 43, 546, 760, 769, 1232, 1262, 1570
BmeT110I CYCGRG 1 cut(s) 1355
BmgBI CACGTC 3 cut(s) 635, 835, 1150
BmgT120I GGNCC 8 cut(s) 43, 546, 760, 769, 1232, 1262, 1427, 1570
BmrFI CCNGG 5 cut(s) 226, 764, 887, 1431, 1487
BmsI GCATC 3 cut(s) 582, 816, 1683
BmtI GCTAGC 1 cut(s) 1499
BpiI GAAGAC 2 cut(s) 1077, 1182
BpmI CTGGAG 4 cut(s) 208, 473, 785, 1649
Bpu14I TTCGAA 2 cut(s) 460, 822
BpuEI CTTGAG 2 cut(s) 571, 635
BpuMI CCSGG 3 cut(s) 887, 1431, 1487
BsaAI YACGTR 1 cut(s) 1612
BsaBI GATNNNNATC 1 cut(s) 519
BsaHI GRCGYC 3 cut(s) 102, 229, 1179
BsaJI CCNNGG 6 cut(s) 27, 297, 1257, 1271, 1429, 1485
BsaWI WCCGGW 3 cut(s) 1033, 1087, 1234
BsaXI ACNNNNNCTCC 2 cut(s) 206, 236
Bse118I RCCGGY 2 cut(s) 471, 1181
Bse1I ACTGG 1 cut(s) 254
Bse3DI GCAATG 2 cut(s) 864, 1499
Bse8I GATNNNNATC 1 cut(s) 519
BseBI CCWGG 2 cut(s) 226, 764
BseDI CCNNGG 6 cut(s) 27, 297, 1257, 1271, 1429, 1485
BseGI GGATG 5 cut(s) 597, 1390, 1531, 1693, 1698
BseJI GATNNNNATC 1 cut(s) 519
BseMI GCAATG 2 cut(s) 864, 1499
BseNI ACTGG 1 cut(s) 254
BseRI GAGGAG 3 cut(s) 521, 524, 1031
BseXI GCAGC 7 cut(s) 87, 90, 276, 616, 619, 1592, 1707
Bsh1236I CGCG 3 cut(s) 192, 345, 1259
Bsh1285I CGRYCG 1 cut(s) 751
BshFI GGCC 6 cut(s) 60, 139, 966, 1349, 1428, 1490
BshNI GGYRCC 4 cut(s) 32, 228, 1594, 1671
BsiEI CGRYCG 1 cut(s) 751
BsiHKCI CYCGRG 1 cut(s) 1355
BsiWI CGTACG 1 cut(s) 1608
BslFI GGGAC 4 cut(s) 361, 416, 750, 755
BsmAI GTCTC 1 cut(s) 936
BsmFI GGGAC 4 cut(s) 361, 416, 750, 755
BsmI GAATGC 1 cut(s) 468
BsnI GGCC 6 cut(s) 60, 139, 966, 1349, 1428, 1490
BsoBI CYCGRG 1 cut(s) 1355
Bsp119I TTCGAA 2 cut(s) 460, 822
Bsp1286I GDGCHC 1 cut(s) 1475
Bsp143I GATC 6 cut(s) 94, 279, 304, 389, 520, 1624
BspANI GGCC 6 cut(s) 60, 139, 966, 1349, 1428, 1490
BspFNI CGCG 3 cut(s) 192, 345, 1259
BspMAI CTGCAG 1 cut(s) 1480
BspMI ACCTGC 1 cut(s) 1555
BspOI GCTAGC 1 cut(s) 1499
BspPI GGATC 8 cut(s) 102, 274, 299, 384, 397, 515, 528, 1632
BspQI GCTCTTC 2 cut(s) 16, 819
BspT104I TTCGAA 2 cut(s) 460, 822
BspT107I GGYRCC 4 cut(s) 32, 228, 1594, 1671
BsrDI GCAATG 2 cut(s) 864, 1499
BsrFI RCCGGY 2 cut(s) 471, 1181
BsrI ACTGG 1 cut(s) 254
BssAI RCCGGY 2 cut(s) 471, 1181
BssECI CCNNGG 6 cut(s) 27, 297, 1257, 1271, 1429, 1485
BssMI GATC 6 cut(s) 94, 279, 304, 389, 520, 1624
BssNAI GTATAC 1 cut(s) 790
BssNI GRCGYC 3 cut(s) 102, 229, 1179
BssSI CACGAG 2 cut(s) 337, 870
BssT1I CCWWGG 1 cut(s) 27
Bst1107I GTATAC 1 cut(s) 790
Bst2BI CACGAG 2 cut(s) 337, 870
Bst2UI CCWGG 2 cut(s) 226, 764
Bst4CI ACNGT 3 cut(s) 779, 1272, 1662
Bst6I CTCTTC 5 cut(s) 16, 141, 819, 1092, 1188
BstACI GRCGYC 3 cut(s) 102, 229, 1179
BstAPI GCANNNNNTGC 2 cut(s) 601, 1505
BstBAI YACGTR 1 cut(s) 1612
BstBI TTCGAA 2 cut(s) 460, 822
BstC8I GCNNGC 6 cut(s) 473, 534, 1183, 1426, 1497, 1506
BstDEI CTNAG 1 cut(s) 170
BstDSI CCRYGG 2 cut(s) 1257, 1271
BstF5I GGATG 5 cut(s) 597, 1390, 1531, 1693, 1698
BstFNI CGCG 3 cut(s) 192, 345, 1259
BstH2I RGCGCY 2 cut(s) 232, 986
BstHHI GCGC 7 cut(s) 194, 231, 345, 423, 961, 985, 1510
BstKTI GATC 6 cut(s) 97, 282, 307, 392, 523, 1627
BstMAI GTCTC 1 cut(s) 936
BstMBI GATC 6 cut(s) 94, 279, 304, 389, 520, 1624
BstMCI CGRYCG 1 cut(s) 751
BstNI CCWGG 2 cut(s) 226, 764
BstNSI RCATGY 1 cut(s) 367
BstSCI CCNGG 5 cut(s) 224, 762, 885, 1429, 1485
BstSFI CTRYAG 2 cut(s) 841, 1476
BstUI CGCG 3 cut(s) 192, 345, 1259
BstV1I GCAGC 7 cut(s) 87, 90, 276, 616, 619, 1592, 1707
BstV2I GAAGAC 2 cut(s) 1077, 1182
BstX2I RGATCY 4 cut(s) 94, 389, 520, 1624
BstYI RGATCY 4 cut(s) 94, 389, 520, 1624
BstZ17I GTATAC 1 cut(s) 790
BsuI GTATCC 1 cut(s) 373
BsuRI GGCC 6 cut(s) 60, 139, 966, 1349, 1428, 1490
BtgI CCRYGG 2 cut(s) 1257, 1271
BtgZI GCGATG 1 cut(s) 1433
BtrI CACGTC 3 cut(s) 635, 835, 1150
BtsCI GGATG 5 cut(s) 597, 1390, 1531, 1693, 1698
BtsI GCAGTG 1 cut(s) 493
BtsIMutI CAGTG 2 cut(s) 208, 493
BveI ACCTGC 1 cut(s) 1555
Cac8I GCNNGC 6 cut(s) 473, 534, 1183, 1426, 1497, 1506
CaiI CAGNNNCTG 2 cut(s) 207, 1645
CfoI GCGC 7 cut(s) 194, 231, 345, 423, 961, 985, 1510
Cfr10I RCCGGY 2 cut(s) 471, 1181
Cfr13I GGNCC 8 cut(s) 43, 546, 760, 769, 1232, 1262, 1427, 1570
Cfr42I CCGCGG 1 cut(s) 1260
CseI GACGC 1 cut(s) 1187
Csp6I GTAC 5 cut(s) 436, 540, 883, 1393, 1609
CspCI CAANNNNNGTGG 2 cut(s) 1548, 1583
CviAII CATG 7 cut(s) 274, 364, 399, 560, 757, 1492, 1750
CviQI GTAC 5 cut(s) 436, 540, 883, 1393, 1609
DdeI CTNAG 1 cut(s) 170
DinI GGCGCC 1 cut(s) 230
DpnI GATC 6 cut(s) 96, 281, 306, 391, 522, 1626
DpnII GATC 6 cut(s) 94, 279, 304, 389, 520, 1624
DrdI GACNNNNNNGTC 1 cut(s) 767
DseDI GACNNNNNNGTC 1 cut(s) 767
EaeI YGGCCR 2 cut(s) 137, 1488
Eam1104I CTCTTC 5 cut(s) 16, 141, 819, 1092, 1188
EarI CTCTTC 5 cut(s) 16, 141, 819, 1092, 1188
Eco130I CCWWGG 1 cut(s) 27
Eco147I AGGCCT 1 cut(s) 1349
Eco24I GRGCYC 1 cut(s) 1475
Eco47I GGWCC 7 cut(s) 43, 546, 760, 769, 1232, 1262, 1570
Eco88I CYCGRG 1 cut(s) 1355
EcoO109I RGGNCCY 1 cut(s) 769
EcoRII CCWGG 2 cut(s) 224, 762
EcoT14I CCWWGG 1 cut(s) 27
EcoT22I ATGCAT 1 cut(s) 433
EcoT38I GRGCYC 1 cut(s) 1475
EgeI GGCGCC 1 cut(s) 230
EheI GGCGCC 1 cut(s) 230
ErhI CCWWGG 1 cut(s) 27
FaeI CATG 7 cut(s) 277, 367, 402, 563, 760, 1495, 1753
FaqI GGGAC 4 cut(s) 361, 416, 750, 755
FatI CATG 7 cut(s) 273, 363, 398, 559, 756, 1491, 1749
FauI CCCGC 4 cut(s) 338, 529, 693, 1252
FauNDI CATATG 1 cut(s) 427
FblI GTMKAC 1 cut(s) 789
FokI GGATG 5 cut(s) 604, 1397, 1538, 1700, 1705
FriOI GRGCYC 1 cut(s) 1475
FspAI RTGCGCAY 1 cut(s) 422
FspI TGCGCA 1 cut(s) 422
GlaI GCGC 7 cut(s) 193, 230, 344, 422, 960, 984, 1509
GsuI CTGGAG 4 cut(s) 208, 473, 785, 1649
HaeII RGCGCY 2 cut(s) 232, 986
HaeIII GGCC 6 cut(s) 60, 139, 966, 1349, 1428, 1490
HgaI GACGC 1 cut(s) 1187
HhaI GCGC 7 cut(s) 194, 231, 345, 423, 961, 985, 1510
Hin1I GRCGYC 3 cut(s) 102, 229, 1179
Hin1II CATG 7 cut(s) 277, 367, 402, 563, 760, 1495, 1753
Hin6I GCGC 7 cut(s) 192, 229, 343, 421, 959, 983, 1508
HinP1I GCGC 7 cut(s) 192, 229, 343, 421, 959, 983, 1508
HincII GTYRAC 1 cut(s) 214
HindII GTYRAC 1 cut(s) 214
HinfI GANTC 8 cut(s) 166, 349, 515, 738, 900, 1001, 1019, 1365
HphI GGTGA 4 cut(s) 314, 656, 1010, 1166
Hpy166II GTNNAC 3 cut(s) 214, 790, 1570
Hpy188III TCNNGA 7 cut(s) 98, 387, 706, 895, 941, 1123, 1628
Hpy8I GTNNAC 3 cut(s) 214, 790, 1570
Hpy99I CGWCG 5 cut(s) 107, 446, 779, 863, 1609
HpyAV CCTTC 4 cut(s) 34, 1067, 1096, 1339
HpyCH4III ACNGT 3 cut(s) 779, 1272, 1662
HpyCH4IV ACGT 6 cut(s) 102, 634, 834, 858, 1149, 1611
HpyF3I CTNAG 1 cut(s) 170
HpySE526I ACGT 6 cut(s) 102, 634, 834, 858, 1149, 1611
Hsp92I GRCGYC 3 cut(s) 102, 229, 1179
Hsp92II CATG 7 cut(s) 277, 367, 402, 563, 760, 1495, 1753
HspAI GCGC 7 cut(s) 192, 229, 343, 421, 959, 983, 1508
KasI GGCGCC 1 cut(s) 228
KroI GCCGGC 2 cut(s) 471, 1181
KroNI GCCGGC 2 cut(s) 473, 1183
KspI CCGCGG 1 cut(s) 1260
Kzo9I GATC 6 cut(s) 94, 279, 304, 389, 520, 1624
LguI GCTCTTC 2 cut(s) 16, 819
LmnI GCTCC 2 cut(s) 615, 1090
Lsp1109I GCAGC 7 cut(s) 87, 90, 276, 616, 619, 1592, 1707
LweI GCATC 3 cut(s) 582, 816, 1683
MaeII ACGT 6 cut(s) 102, 634, 834, 858, 1149, 1611
MaeIII GTNAC 2 cut(s) 1202, 1757
MalI GATC 6 cut(s) 96, 281, 306, 391, 522, 1626
MboI GATC 6 cut(s) 94, 279, 304, 389, 520, 1624
MflI RGATCY 4 cut(s) 94, 389, 520, 1624
MhlI GDGCHC 1 cut(s) 1475
MlsI TGGCCA 1 cut(s) 139
MluCI AATT 5 cut(s) 14, 82, 818, 975, 1208
MluNI TGGCCA 1 cut(s) 139
Mly113I GGCGCC 1 cut(s) 229
MlyI GAGTC 3 cut(s) 343, 732, 1028
MmeI TCCRAC 5 cut(s) 307, 662, 993, 1534, 1602
Mox20I TGGCCA 1 cut(s) 139
Mph1103I ATGCAT 1 cut(s) 433
MroNI GCCGGC 2 cut(s) 471, 1181
MscI TGGCCA 1 cut(s) 139
MseI TTAA 1 cut(s) 1050
MslI CAYNNNNRTG 1 cut(s) 554
Msp20I TGGCCA 1 cut(s) 139
MspA1I CMGCKG 2 cut(s) 846, 1259
MspR9I CCNGG 5 cut(s) 226, 764, 887, 1431, 1487
Mva1269I GAATGC 1 cut(s) 468
MvaI CCWGG 2 cut(s) 226, 764
MvnI CGCG 3 cut(s) 192, 345, 1259
NaeI GCCGGC 2 cut(s) 473, 1183
NarI GGCGCC 1 cut(s) 229
NciI CCSGG 3 cut(s) 887, 1431, 1487
NdeI CATATG 1 cut(s) 427
NdeII GATC 6 cut(s) 94, 279, 304, 389, 520, 1624
NgoMIV GCCGGC 2 cut(s) 471, 1181
NheI GCTAGC 1 cut(s) 1495
NlaIII CATG 7 cut(s) 277, 367, 402, 563, 760, 1495, 1753
NmuCI GTSAC 1 cut(s) 1202
NsbI TGCGCA 1 cut(s) 422
NsiI ATGCAT 1 cut(s) 433
NspI RCATGY 1 cut(s) 367
NspV TTCGAA 2 cut(s) 460, 822
OliI CACNNNNGTG 1 cut(s) 554
PaqCI CACCTGC 1 cut(s) 1555
PceI AGGCCT 1 cut(s) 1349
PciI ACATGT 1 cut(s) 363
PciSI GCTCTTC 2 cut(s) 16, 819
PcsI WCGNNNNNNNCGW 1 cut(s) 798
PctI GAATGC 1 cut(s) 468
PdiI GCCGGC 2 cut(s) 473, 1183
PfeI GAWTC 5 cut(s) 166, 515, 900, 1001, 1365
Pfl23II CGTACG 1 cut(s) 1608
PflFI GACNNNGTC 1 cut(s) 779
PflMI CCANNNNNTGG 2 cut(s) 249, 399
PleI GAGTC 3 cut(s) 343, 732, 1027
PluTI GGCGCC 1 cut(s) 232
PpsI GAGTC 3 cut(s) 343, 732, 1027
Ppu21I YACGTR 1 cut(s) 1612
PpuMI RGGWCCY 1 cut(s) 769
PscI ACATGT 1 cut(s) 363
PsiI TTATAA 1 cut(s) 668
Psp5II RGGWCCY 1 cut(s) 769
Psp6I CCWGG 2 cut(s) 224, 762
PspGI CCWGG 2 cut(s) 224, 762
PspLI CGTACG 1 cut(s) 1608
PspPI GGNCC 8 cut(s) 43, 546, 760, 769, 1232, 1262, 1427, 1570
PspPPI RGGWCCY 1 cut(s) 769
PstI CTGCAG 1 cut(s) 1480
PstNI CAGNNNCTG 2 cut(s) 207, 1645
PsuI RGATCY 4 cut(s) 94, 389, 520, 1624
PsyI GACNNNGTC 1 cut(s) 779
PvuII CAGCTG 1 cut(s) 846
RsaI GTAC 5 cut(s) 437, 541, 884, 1394, 1610
RsaNI GTAC 5 cut(s) 436, 540, 883, 1393, 1609
RseI CAYNNNNRTG 1 cut(s) 554
SacII CCGCGG 1 cut(s) 1260
SapI GCTCTTC 2 cut(s) 16, 819
SaqAI TTAA 1 cut(s) 1050
Sau3AI GATC 6 cut(s) 94, 279, 304, 389, 520, 1624
Sau96I GGNCC 8 cut(s) 43, 546, 760, 769, 1232, 1262, 1427, 1570
SchI GAGTC 3 cut(s) 343, 732, 1028
ScrFI CCNGG 5 cut(s) 226, 764, 887, 1431, 1487
SduI GDGCHC 1 cut(s) 1475
SfaNI GCATC 3 cut(s) 582, 816, 1683
SfcI CTRYAG 2 cut(s) 841, 1476
SfoI GGCGCC 1 cut(s) 230
Sfr303I CCGCGG 1 cut(s) 1260
SfuI TTCGAA 2 cut(s) 460, 822
SgrBI CCGCGG 1 cut(s) 1260
SinI GGWCC 7 cut(s) 43, 546, 760, 769, 1232, 1262, 1570
SmiMI CAYNNNNRTG 1 cut(s) 554
SmlI CTYRAG 2 cut(s) 586, 614
SmoI CTYRAG 2 cut(s) 586, 614
Sse9I AATT 5 cut(s) 14, 82, 818, 975, 1208
SseBI AGGCCT 1 cut(s) 1349
SspDI GGCGCC 1 cut(s) 228
StuI AGGCCT 1 cut(s) 1349
StyD4I CCNGG 5 cut(s) 224, 762, 885, 1429, 1485
StyI CCWWGG 1 cut(s) 27
TaaI ACNGT 3 cut(s) 779, 1272, 1662
TaiI ACGT 6 cut(s) 105, 637, 837, 861, 1152, 1614
TasI AATT 5 cut(s) 14, 82, 818, 975, 1208
TauI GCSGC 3 cut(s) 1418, 1600, 1603
TfiI GAWTC 5 cut(s) 166, 515, 900, 1001, 1365
Tru1I TTAA 1 cut(s) 1050
Tru9I TTAA 1 cut(s) 1050
TscAI CASTG 2 cut(s) 208, 493
TseFI GTSAC 1 cut(s) 1202
TseI GCWGC 7 cut(s) 75, 78, 289, 604, 607, 1580, 1720
Tsp45I GTSAC 1 cut(s) 1202
TspDTI ATGAA 3 cut(s) 330, 745, 1055
TspGWI ACGGA 1 cut(s) 1538
TspRI CASTG 2 cut(s) 208, 493
Tth111I GACNNNGTC 1 cut(s) 779
Van91I CCANNNNNTGG 2 cut(s) 249, 399
VpaK11BI GGWCC 7 cut(s) 43, 546, 760, 769, 1232, 1262, 1570
XapI RAATTY 1 cut(s) 14
XbaI TCTAGA 1 cut(s) 97
XceI RCATGY 1 cut(s) 367
XcmI CCANNNNNNNNNTGG 1 cut(s) 53
XmiI GTMKAC 1 cut(s) 789
ZraI GACGTC 1 cut(s) 103
Zsp2I ATGCAT 1 cut(s) 433
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.