Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr08

Orthogroup ID

OG0019581

Physical Location & Seq

Genomic Coordinates Forward (+)

28672411 .. 28672623

Gene Structure 213 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD08G1223200.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 213 bp

ATGTTGATGCCCGAGCCACTCTTATTTGGTTGGGAATTAATGTTTGACTTTGTCTATAAAGATTTTGGATTTGCTCATAATGATCAAATTATATCCGGTCTTATTTCTACTTTTTCAGTCATATTAGATACAATTTTTAAATACTGGATCTTTCGTTATTTAAATCATGTATCTCCTTCACTTGTAGTAATTTATCATTCAATGAATGAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CemA

Protein Analysis

71

Amino Acids

8.34

Weight (kDa)

5.04

Isoelectric Point (pI)

32.29

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
CemA	PF03040	10 - 70	8.9e-26	CemA family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0019581)

Species	Orthologous Gene IDs
arabidopsis_thaliana	ATCG00530
fragaria_vesca	FvH4_3g27991
malus_domestica	MD08G1223200.v1.1
prunus_persica	Prupe.7G029500_v2.0.a1
pyrus_communis	pycom04g07520 pycom12397g00230
rosa_chinensis	RchiOBHm_CPg0502081

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	155
AgsI	TTSAA	1 cut(s)	201
AlwI	GGATC	1 cut(s)	155
Ama87I	CYCGRG	1 cut(s)	11
AseI	ATTAAT	1 cut(s)	38
AvaI	CYCGRG	1 cut(s)	11
BclI	TGATCA	1 cut(s)	82
BmeT110I	CYCGRG	1 cut(s)	11
BsaWI	WCCGGW	1 cut(s)	95
Bse1I	ACTGG	1 cut(s)	149
BseNI	ACTGG	1 cut(s)	149
BsiHKCI	CYCGRG	1 cut(s)	11
BsiSI	CCGG	1 cut(s)	96
BsoBI	CYCGRG	1 cut(s)	11
Bsp143I	GATC	2 cut(s)	82, 147
BspPI	GGATC	1 cut(s)	155
BsrI	ACTGG	1 cut(s)	149
BssMI	GATC	2 cut(s)	82, 147
BstKTI	GATC	2 cut(s)	85, 150
BstMBI	GATC	2 cut(s)	82, 147
BstX2I	RGATCY	1 cut(s)	147
BstYI	RGATCY	1 cut(s)	147
CviAII	CATG	1 cut(s)	167
CviJI	RGCY	1 cut(s)	16
CviKI_1	RGCY	1 cut(s)	16
DpnI	GATC	2 cut(s)	84, 149
DpnII	GATC	2 cut(s)	82, 147
DraI	TTTAAA	2 cut(s)	139, 162
Eco88I	CYCGRG	1 cut(s)	11
FaeI	CATG	1 cut(s)	170
FaiI	YATR	5 cut(s)	57, 78, 92, 122, 168
FatI	CATG	1 cut(s)	166
FbaI	TGATCA	1 cut(s)	82
HapII	CCGG	1 cut(s)	96
Hin1II	CATG	1 cut(s)	170
HpaII	CCGG	1 cut(s)	96
HpyAV	CCTTC	1 cut(s)	186
Hsp92II	CATG	1 cut(s)	170
Ksp22I	TGATCA	1 cut(s)	82
Kzo9I	GATC	2 cut(s)	82, 147
LpnPI	CCDG	2 cut(s)	109, 130
MalI	GATC	2 cut(s)	84, 149
MboI	GATC	2 cut(s)	82, 147
MflI	RGATCY	1 cut(s)	147
MluCI	AATT	4 cut(s)	35, 87, 132, 189
MseI	TTAA	3 cut(s)	38, 138, 161
MspI	CCGG	1 cut(s)	96
NdeII	GATC	2 cut(s)	82, 147
NlaIII	CATG	1 cut(s)	170
PflFI	GACNNNGTC	1 cut(s)	50
PshBI	ATTAAT	1 cut(s)	38
PsuI	RGATCY	1 cut(s)	147
PsyI	GACNNNGTC	1 cut(s)	50
SaqAI	TTAA	3 cut(s)	38, 138, 161
Sau3AI	GATC	2 cut(s)	82, 147
SgeI	CNNG	6 cut(s)	23, 25, 108, 157, 179, 194
SmiI	ATTTAAAT	1 cut(s)	162
Sse9I	AATT	4 cut(s)	35, 87, 132, 189
SwaI	ATTTAAAT	1 cut(s)	162
TasI	AATT	4 cut(s)	35, 87, 132, 189
Tru1I	TTAA	3 cut(s)	38, 138, 161
Tru9I	TTAA	3 cut(s)	38, 138, 161
Tth111I	GACNNNGTC	1 cut(s)	50
VspI	ATTAAT	1 cut(s)	38

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.