Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr08

Orthogroup ID

OG0015137

Physical Location & Seq

Genomic Coordinates Reverse (-)

30299776 .. 30300643

Gene Structure 868 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD08G1235400.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 783 bp

ATGAGCCTTGACCTGCAAGCATTGGTTCGAATTCTCCATTCCTGCAACACCCACCATTCAATCCACATCGGAAAGCAGCTCCACCTTATCTTCCTCAAAAAGGGTGTTTTAAACTCTGCCGTCACCCTCGGAAACCGTCTGATGCAGATGTATGGGAAATGCGGAAGCATGGCTGATGCACGGAAACTGTTCGACGAAATGCCCCAGAGAAACTGTTTCTCCTGGAACACGTTGATAGAAGGTTATATGAAATCTGGGGACCAAGAAAAGTCTTTGGAGTTGTTTGAAGCTATGTCCCATAAGGATGATTTTACGTGGAATTTGGTTGTTTCGGGGCTTGCTAAAGCGGGTAAGCTAGAGATTGCTCGGGGTTTGTTCAATGACATGCCTAGGAGAAATTGGGGTGTTTGGAATTCTATGATTCATGGATATGCCAAAAATGGGTGTCCTGGAGAGGCTTTAAGGCTTTTCAAGGAATTGAATTCGGACGCGTTGGAATTGTCAAGTGAATATAAGTTTGTGTTGGCTACTGTTGTTGGAGCTTGTGCCGATTTGCTTGCGCTGGGTTGGGGCAAGCAAATCCATGCGCGCATTTTCATTGATGAAGTTGAATTTGACTCTGTTTTGGCTAGTTCGTTGGTTAACTTTTACGCGAAGTGCGGGGATTTGGATAGCGCGGGCCACATTTTAAACATGATGAAGGAACCAGATGATTACTCTCTCTCAGCATTGATTTCAGGTTATGGAAATTGCGGTAGAATGAATGATGCAAGAAGACATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR Sec16

Protein Analysis

261

Amino Acids

29.06

Weight (kDa)

6.79

Isoelectric Point (pI)

41.67

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR	PF01535	104 - 133	3.7e-06	PPR repeat
PPR	PF01535	136 - 160	4.2e-08	PPR repeat

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0015137)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G77010
fragaria_vesca	FvH4_5g29130
malus_domestica	MD08G1235400.v1.1
prunus_persica	Prupe.1G571500_v2.0.a1
rosa_chinensis	RchiOBHm_Chr7g0221791
rosa_laevigata	RLG00000002123
rosa_multiflora	Rmu_sc0001922.1_g000011 Rmu_sc0001922.1_g000012
rosa_roxburghii	Rroxscaffold_3G00237720
rosa_rugosa	Rorug07G0203300 Rorug07G0203400
rosa_samantha	Rh7AG344300 Rh7BG335100 Rh7CG361700 Rh7DG342100
rosa_wichuraiana	Rw7G029200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	21
AccII	CGCG	4 cut(s)	491, 589, 653, 677
AciI	CCGC	5 cut(s)	162, 347, 660, 677, 753
AcsI	RAATTY	5 cut(s)	30, 319, 412, 481, 611
AfiI	CCNNNNNNNGG	2 cut(s)	100, 441
AflIII	ACRYGT	2 cut(s)	228, 489
AgsI	TTSAA	6 cut(s)	60, 287, 379, 472, 481, 611
AjnI	CCWGG	2 cut(s)	221, 448
AluBI	AGCT	4 cut(s)	79, 290, 355, 542
AluI	AGCT	4 cut(s)	79, 290, 355, 542
Ama87I	CYCGRG	1 cut(s)	366
AoxI	GGCC	1 cut(s)	679
ApeKI	GCWGC	1 cut(s)	76
ApoI	RAATTY	5 cut(s)	30, 319, 412, 481, 611
Asp700I	GAANNNNTTC	1 cut(s)	188
AspA2I	CCTAGG	1 cut(s)	389
AspLEI	GCGC	4 cut(s)	562, 589, 591, 677
AspS9I	GGNCC	2 cut(s)	259, 679
AsuHPI	GGTGA	1 cut(s)	115
AsuII	TTCGAA	1 cut(s)	28
AvaI	CYCGRG	1 cut(s)	366
AvaII	GGWCC	1 cut(s)	259
AvrII	CCTAGG	1 cut(s)	389
BbvI	GCAGC	1 cut(s)	88
BceAI	ACGGC	1 cut(s)	104
BcgI	CGANNNNNNTGC	2 cut(s)	539, 573
BciT130I	CCWGG	2 cut(s)	223, 450
BfaI	CTAG	3 cut(s)	356, 390, 630
BfuAI	ACCTGC	1 cut(s)	21
BisI	GCNGC	1 cut(s)	77
BlnI	CCTAGG	1 cut(s)	389
BlsI	GCNGC	1 cut(s)	78
Bme1390I	CCNGG	2 cut(s)	223, 450
Bme18I	GGWCC	1 cut(s)	259
BmeT110I	CYCGRG	1 cut(s)	366
BmgT120I	GGNCC	2 cut(s)	259, 679
BmiI	GGNNCC	2 cut(s)	260, 705
BmrFI	CCNGG	2 cut(s)	223, 450
BmsI	GCATC	3 cut(s)	132, 166, 757
BpmI	CTGGAG	1 cut(s)	471
Bpu14I	TTCGAA	1 cut(s)	28
BsaAI	YACGTR	1 cut(s)	315
BsaJI	CCNNGG	2 cut(s)	127, 389
BsaXI	ACNNNNNCTCC	2 cut(s)	203, 233
Bsc4I	CCNNNNNNNGG	2 cut(s)	100, 441
BseBI	CCWGG	2 cut(s)	223, 450
BseDI	CCNNGG	2 cut(s)	127, 389
BseGI	GGATG	1 cut(s)	310
BseLI	CCNNNNNNNGG	2 cut(s)	100, 441
BseMII	CTCAG	1 cut(s)	738
BsePI	GCGCGC	1 cut(s)	587
BseXI	GCAGC	1 cut(s)	88
BseYI	CCCAGC	1 cut(s)	562
Bsh1236I	CGCG	4 cut(s)	491, 589, 653, 677
BshFI	GGCC	1 cut(s)	681
BsiHKCI	CYCGRG	1 cut(s)	366
BslFI	GGGAC	2 cut(s)	272, 280
BslI	CCNNNNNNNGG	2 cut(s)	100, 441
BsmFI	GGGAC	2 cut(s)	272, 280
BsnI	GGCC	1 cut(s)	681
BsoBI	CYCGRG	1 cut(s)	366
Bsp119I	TTCGAA	1 cut(s)	28
BspACI	CCGC	5 cut(s)	162, 347, 660, 677, 753
BspANI	GGCC	1 cut(s)	681
BspCNI	CTCAG	1 cut(s)	737
BspFNI	CGCG	4 cut(s)	491, 589, 653, 677
BspLI	GGNNCC	2 cut(s)	260, 705
BspMI	ACCTGC	1 cut(s)	21
BspT104I	TTCGAA	1 cut(s)	28
BssECI	CCNNGG	2 cut(s)	127, 389
BssHII	GCGCGC	1 cut(s)	587
BssT1I	CCWWGG	1 cut(s)	389
Bst2UI	CCWGG	2 cut(s)	223, 450
Bst4CI	ACNGT	4 cut(s)	137, 189, 215, 532
BstBAI	YACGTR	1 cut(s)	315
BstBI	TTCGAA	1 cut(s)	28
BstC8I	GCNNGC	6 cut(s)	18, 339, 558, 575, 589, 679
BstDEI	CTNAG	1 cut(s)	724
BstENI	CCTNNNNNAGG	1 cut(s)	98
BstF5I	GGATG	1 cut(s)	310
BstFNI	CGCG	4 cut(s)	491, 589, 653, 677
BstHHI	GCGC	4 cut(s)	562, 589, 591, 677
BstNI	CCWGG	2 cut(s)	223, 450
BstNSI	RCATGY	1 cut(s)	388
BstSCI	CCNGG	2 cut(s)	221, 448
BstUI	CGCG	4 cut(s)	491, 589, 653, 677
BstV1I	GCAGC	1 cut(s)	88
BsuRI	GGCC	1 cut(s)	681
BtsCI	GGATG	1 cut(s)	310
BveI	ACCTGC	1 cut(s)	21
Cac8I	GCNNGC	6 cut(s)	18, 339, 558, 575, 589, 679
CfoI	GCGC	4 cut(s)	562, 589, 591, 677
Cfr13I	GGNCC	2 cut(s)	259, 679
CseI	GACGC	1 cut(s)	497
CviAII	CATG	5 cut(s)	169, 385, 425, 584, 694
DdeI	CTNAG	1 cut(s)	724
DraI	TTTAAA	2 cut(s)	111, 690
Eco130I	CCWWGG	1 cut(s)	389
Eco47I	GGWCC	1 cut(s)	259
Eco88I	CYCGRG	1 cut(s)	366
EcoNI	CCTNNNNNAGG	1 cut(s)	98
EcoRI	GAATTC	3 cut(s)	30, 412, 481
EcoRII	CCWGG	2 cut(s)	221, 448
EcoT14I	CCWWGG	1 cut(s)	389
ErhI	CCWWGG	1 cut(s)	389
FaeI	CATG	5 cut(s)	172, 388, 428, 587, 697
FaqI	GGGAC	2 cut(s)	272, 280
FatI	CATG	5 cut(s)	168, 384, 424, 583, 693
FauI	CCCGC	3 cut(s)	340, 653, 670
Fnu4HI	GCNGC	1 cut(s)	77
FokI	GGATG	1 cut(s)	317
Fsp4HI	GCNGC	1 cut(s)	77
FspBI	CTAG	3 cut(s)	356, 390, 630
GlaI	GCGC	4 cut(s)	561, 588, 590, 676
GluI	GCNGC	1 cut(s)	77
GsaI	CCCAGC	1 cut(s)	566
GsuI	CTGGAG	1 cut(s)	471
HaeIII	GGCC	1 cut(s)	681
HgaI	GACGC	1 cut(s)	497
HhaI	GCGC	4 cut(s)	562, 589, 591, 677
Hin1II	CATG	5 cut(s)	172, 388, 428, 587, 697
Hin6I	GCGC	4 cut(s)	560, 587, 589, 675
HinP1I	GCGC	4 cut(s)	560, 587, 589, 675
HincII	GTYRAC	1 cut(s)	643
HindII	GTYRAC	1 cut(s)	643
HinfI	GANTC	2 cut(s)	421, 617
HpaI	GTTAAC	1 cut(s)	643
HphI	GGTGA	1 cut(s)	115
Hpy166II	GTNNAC	1 cut(s)	643
Hpy188I	TCNGA	4 cut(s)	71, 131, 141, 487
Hpy8I	GTNNAC	1 cut(s)	643
Hpy99I	CGWCG	1 cut(s)	197
HpyAV	CCTTC	2 cut(s)	233, 694
HpyCH4III	ACNGT	4 cut(s)	137, 189, 215, 532
HpyCH4IV	ACGT	2 cut(s)	230, 314
HpyCH4V	TGCA	5 cut(s)	16, 45, 145, 179, 770
HpyF3I	CTNAG	1 cut(s)	724
HpySE526I	ACGT	2 cut(s)	230, 314
Hsp92II	CATG	5 cut(s)	172, 388, 428, 587, 697
HspAI	GCGC	4 cut(s)	560, 587, 589, 675
KspAI	GTTAAC	1 cut(s)	643
LmnI	GCTCC	2 cut(s)	84, 539
Lsp1109I	GCAGC	1 cut(s)	88
LweI	GCATC	3 cut(s)	132, 166, 757
MaeI	CTAG	3 cut(s)	356, 390, 630
MaeII	ACGT	2 cut(s)	230, 314
MaeIII	GTNAC	1 cut(s)	121
MboII	GAAGA	1 cut(s)	82
MluCI	AATT	9 cut(s)	30, 319, 397, 412, 476, 481, 497, 611, 748
MluI	ACGCGT	1 cut(s)	489
MlyI	GAGTC	1 cut(s)	611
MmeI	TCCRAC	2 cut(s)	474, 517
MnlI	CCTC	3 cut(s)	104, 137, 448
MroXI	GAANNNNTTC	1 cut(s)	188
MseI	TTAA	5 cut(s)	110, 461, 642, 689, 781
MslI	CAYNNNNRTG	2 cut(s)	303, 429
MspR9I	CCNGG	2 cut(s)	223, 450
MvaI	CCWGG	2 cut(s)	223, 450
MvnI	CGCG	4 cut(s)	491, 589, 653, 677
NlaIII	CATG	5 cut(s)	172, 388, 428, 587, 697
NlaIV	GGNNCC	2 cut(s)	260, 705
NmuCI	GTSAC	1 cut(s)	121
NspI	RCATGY	1 cut(s)	388
NspV	TTCGAA	1 cut(s)	28
PauI	GCGCGC	1 cut(s)	587
PdmI	GAANNNNTTC	1 cut(s)	188
PfeI	GAWTC	1 cut(s)	421
PfoI	TCCNGGA	2 cut(s)	221, 448
PkrI	GCNGC	1 cut(s)	78
PleI	GAGTC	1 cut(s)	611
PpsI	GAGTC	1 cut(s)	611
Ppu21I	YACGTR	1 cut(s)	315
Psp6I	CCWGG	2 cut(s)	221, 448
PspFI	CCCAGC	1 cut(s)	562
PspGI	CCWGG	2 cut(s)	221, 448
PspN4I	GGNNCC	2 cut(s)	260, 705
PspPI	GGNCC	2 cut(s)	259, 679
PteI	GCGCGC	1 cut(s)	587
RseI	CAYNNNNRTG	2 cut(s)	303, 429
SaqAI	TTAA	5 cut(s)	110, 461, 642, 689, 781
SatI	GCNGC	1 cut(s)	77
Sau96I	GGNCC	2 cut(s)	259, 679
SchI	GAGTC	1 cut(s)	611
ScrFI	CCNGG	2 cut(s)	223, 450
SfaNI	GCATC	3 cut(s)	132, 166, 757
SfuI	TTCGAA	1 cut(s)	28
SinI	GGWCC	1 cut(s)	259
SmiMI	CAYNNNNRTG	2 cut(s)	303, 429
Sse9I	AATT	9 cut(s)	30, 319, 397, 412, 476, 481, 497, 611, 748
SsiI	CCGC	5 cut(s)	162, 347, 660, 677, 753
SspMI	CTAG	3 cut(s)	356, 390, 630
StyD4I	CCNGG	2 cut(s)	221, 448
StyI	CCWWGG	1 cut(s)	389
TaaI	ACNGT	4 cut(s)	137, 189, 215, 532
TaiI	ACGT	2 cut(s)	233, 317
TaqI	TCGA	2 cut(s)	28, 192
TasI	AATT	9 cut(s)	30, 319, 397, 412, 476, 481, 497, 611, 748
TfiI	GAWTC	1 cut(s)	421
Tru1I	TTAA	5 cut(s)	110, 461, 642, 689, 781
Tru9I	TTAA	5 cut(s)	110, 461, 642, 689, 781
TseFI	GTSAC	1 cut(s)	121
TseI	GCWGC	1 cut(s)	76
Tsp45I	GTSAC	1 cut(s)	121
TspDTI	ATGAA	6 cut(s)	263, 413, 586, 618, 713, 776
TspGWI	ACGGA	1 cut(s)	196
VpaK11BI	GGWCC	1 cut(s)	259
XagI	CCTNNNNNAGG	1 cut(s)	98
XapI	RAATTY	5 cut(s)	30, 319, 412, 481, 611
XceI	RCATGY	1 cut(s)	388
XmaJI	CCTAGG	1 cut(s)	389
XmnI	GAANNNNTTC	1 cut(s)	188
XspI	CTAG	3 cut(s)	356, 390, 630

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.