Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000007

Orthogroup ID

OG0015137

Physical Location & Seq

Genomic Coordinates Forward (+)

17806514 .. 17807112

Gene Structure 599 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug07G0203400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 396 bp

ATGTGCTGCGAGGACCACGATTCTGCCAAAAGACGGAACAACAAATGGACTGCTGTTTCCAATCTAGACTTCTTGGATGAAGCATTCCATAGAGATGTTGAGTTGAAAAGGTTTAACGAAATGATTTTGTGTTACCTAGCTAAGAGCCTTTTTGTGTGTAAAACACTGGAGGTTTCGAAGATTGGGCCAAATTTTGGTATCAATGATCTTCCCCAGTCAGGGAATTTCTTCCCAAGCCTCAAGTTTCTTGATGTTTCAGTTCACCATCCCGACAATGGCTCAATGGAAAAGCTTTTTCCTCACTTTCCACTACTTGAAGATTTGGCTATAGATGGAGTCCTCGGGCAAAAGGAAGATTTGAATGTCAACATCTCTGCACCCAAACTGAAGACGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR Sec16

Protein Analysis

131

Amino Acids

14.88

Weight (kDa)

5.68

Isoelectric Point (pI)

34.44

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0015137)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G77010
fragaria_vesca	FvH4_5g29130
malus_domestica	MD08G1235400.v1.1
prunus_persica	Prupe.1G571500_v2.0.a1
rosa_chinensis	RchiOBHm_Chr7g0221791
rosa_laevigata	RLG00000002123
rosa_multiflora	Rmu_sc0001922.1_g000011 Rmu_sc0001922.1_g000012
rosa_roxburghii	Rroxscaffold_3G00237720
rosa_rugosa	Rorug07G0203300 Rorug07G0203400
rosa_samantha	Rh7AG344300 Rh7BG335100 Rh7CG361700 Rh7DG342100
rosa_wichuraiana	Rw7G029200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	194
AcsI	RAATTY	2 cut(s)	190, 223
AfiI	CCNNNNNNNGG	5 cut(s)	33, 194, 218, 219, 275
AgsI	TTSAA	3 cut(s)	106, 317, 361
AjuI	GAANNNNNNNTTGG	2 cut(s)	53, 85
AluBI	AGCT	2 cut(s)	140, 292
AluI	AGCT	2 cut(s)	140, 292
Ama87I	CYCGRG	1 cut(s)	341
AoxI	GGCC	1 cut(s)	185
ApeKI	GCWGC	1 cut(s)	6
ApoI	RAATTY	2 cut(s)	190, 223
Asp700I	GAANNNNTTC	1 cut(s)	227
AspS9I	GGNCC	2 cut(s)	13, 185
AsuHPI	GGTGA	1 cut(s)	254
AsuII	TTCGAA	1 cut(s)	176
AvaI	CYCGRG	1 cut(s)	341
AvaII	GGWCC	1 cut(s)	13
BccI	CCATC	2 cut(s)	273, 326
BfaI	CTAG	2 cut(s)	65, 137
BfmI	CTRYAG	1 cut(s)	327
BisI	GCNGC	1 cut(s)	7
BlsI	GCNGC	1 cut(s)	8
Bme18I	GGWCC	1 cut(s)	13
BmeT110I	CYCGRG	1 cut(s)	341
BmgT120I	GGNCC	2 cut(s)	13, 185
BmrI	ACTGGG	1 cut(s)	208
BmuI	ACTGGG	1 cut(s)	208
BpmI	CTGGAG	1 cut(s)	188
Bpu14I	TTCGAA	1 cut(s)	176
BpuEI	CTTGAG	1 cut(s)	224
BsaJI	CCNNGG	1 cut(s)	340
Bsc4I	CCNNNNNNNGG	5 cut(s)	33, 194, 218, 219, 275
Bse1I	ACTGG	2 cut(s)	171, 214
BseDI	CCNNGG	1 cut(s)	340
BseGI	GGATG	2 cut(s)	82, 265
BseLI	CCNNNNNNNGG	5 cut(s)	33, 194, 218, 219, 275
BseNI	ACTGG	2 cut(s)	171, 214
BsgI	GTGCAG	1 cut(s)	360
BshFI	GGCC	1 cut(s)	187
BsiHKCI	CYCGRG	1 cut(s)	341
BslI	CCNNNNNNNGG	5 cut(s)	33, 194, 218, 219, 275
BsmI	GAATGC	1 cut(s)	83
BsnI	GGCC	1 cut(s)	187
BsoBI	CYCGRG	1 cut(s)	341
Bsp119I	TTCGAA	1 cut(s)	176
Bsp143I	GATC	1 cut(s)	205
BspANI	GGCC	1 cut(s)	187
BspT104I	TTCGAA	1 cut(s)	176
BsrI	ACTGG	2 cut(s)	171, 214
BssECI	CCNNGG	1 cut(s)	340
BssMI	GATC	1 cut(s)	205
BstBI	TTCGAA	1 cut(s)	176
BstDEI	CTNAG	1 cut(s)	141
BstF5I	GGATG	2 cut(s)	82, 265
BstKTI	GATC	1 cut(s)	208
BstMBI	GATC	1 cut(s)	205
BstSFI	CTRYAG	1 cut(s)	327
BsuRI	GGCC	1 cut(s)	187
BtsCI	GGATG	2 cut(s)	82, 265
BtsIMutI	CAGTG	1 cut(s)	164
Cfr13I	GGNCC	2 cut(s)	13, 185
CviJI	RGCY	7 cut(s)	140, 147, 187, 237, 279, 292, 326
CviKI_1	RGCY	7 cut(s)	140, 147, 187, 237, 279, 292, 326
DdeI	CTNAG	1 cut(s)	141
DpnI	GATC	1 cut(s)	207
DpnII	GATC	1 cut(s)	205
Eco47I	GGWCC	1 cut(s)	13
Eco88I	CYCGRG	1 cut(s)	341
FaiI	YATR	2 cut(s)	90, 329
Fnu4HI	GCNGC	1 cut(s)	7
FokI	GGATG	2 cut(s)	89, 252
Fsp4HI	GCNGC	1 cut(s)	7
FspBI	CTAG	2 cut(s)	65, 137
GluI	GCNGC	1 cut(s)	7
GsuI	CTGGAG	1 cut(s)	188
HaeIII	GGCC	1 cut(s)	187
HincII	GTYRAC	1 cut(s)	367
HindII	GTYRAC	1 cut(s)	367
HindIII	AAGCTT	1 cut(s)	290
HinfI	GANTC	2 cut(s)	20, 336
HphI	GGTGA	1 cut(s)	254
Hpy166II	GTNNAC	2 cut(s)	262, 367
Hpy188III	TCNNGA	3 cut(s)	65, 248, 269
Hpy8I	GTNNAC	2 cut(s)	262, 367
HpyCH4IV	ACGT	1 cut(s)	392
HpyCH4V	TGCA	1 cut(s)	377
HpyF3I	CTNAG	1 cut(s)	141
HpySE526I	ACGT	1 cut(s)	392
Kzo9I	GATC	1 cut(s)	205
LpnPI	CCDG	3 cut(s)	152, 204, 227
MaeI	CTAG	2 cut(s)	65, 137
MaeII	ACGT	1 cut(s)	392
MaeIII	GTNAC	1 cut(s)	131
MalI	GATC	1 cut(s)	207
MboI	GATC	1 cut(s)	205
MboII	GAAGA	5 cut(s)	190, 200, 220, 329, 365
MluCI	AATT	2 cut(s)	190, 223
MlyI	GAGTC	1 cut(s)	345
MnlI	CCTC	5 cut(s)	4, 163, 248, 309, 350
MroXI	GAANNNNTTC	1 cut(s)	227
MseI	TTAA	1 cut(s)	114
MslI	CAYNNNNRTG	1 cut(s)	93
Mva1269I	GAATGC	1 cut(s)	83
NdeII	GATC	1 cut(s)	205
NspV	TTCGAA	1 cut(s)	176
PctI	GAATGC	1 cut(s)	83
PdmI	GAANNNNTTC	1 cut(s)	227
PfeI	GAWTC	1 cut(s)	20
PflMI	CCANNNNNTGG	1 cut(s)	194
PkrI	GCNGC	1 cut(s)	8
PleI	GAGTC	1 cut(s)	344
PpsI	GAGTC	1 cut(s)	344
PspPI	GGNCC	2 cut(s)	13, 185
RseI	CAYNNNNRTG	1 cut(s)	93
SaqAI	TTAA	1 cut(s)	114
SatI	GCNGC	1 cut(s)	7
Sau3AI	GATC	1 cut(s)	205
Sau96I	GGNCC	2 cut(s)	13, 185
SchI	GAGTC	1 cut(s)	345
SetI	ASST	6 cut(s)	113, 138, 142, 174, 294, 395
SfcI	CTRYAG	1 cut(s)	327
SfuI	TTCGAA	1 cut(s)	176
SinI	GGWCC	1 cut(s)	13
SmiMI	CAYNNNNRTG	1 cut(s)	93
SmlI	CTYRAG	1 cut(s)	239
SmoI	CTYRAG	1 cut(s)	239
Sse9I	AATT	2 cut(s)	190, 223
SspMI	CTAG	2 cut(s)	65, 137
TaiI	ACGT	1 cut(s)	395
TaqI	TCGA	1 cut(s)	176
TasI	AATT	2 cut(s)	190, 223
TfiI	GAWTC	1 cut(s)	20
Tru1I	TTAA	1 cut(s)	114
Tru9I	TTAA	1 cut(s)	114
TscAI	CASTG	1 cut(s)	171
TseI	GCWGC	1 cut(s)	6
TspDTI	ATGAA	1 cut(s)	93
TspGWI	ACGGA	1 cut(s)	49
TspRI	CASTG	1 cut(s)	171
Van91I	CCANNNNNTGG	1 cut(s)	194
VpaK11BI	GGWCC	1 cut(s)	13
XapI	RAATTY	2 cut(s)	190, 223
XbaI	TCTAGA	1 cut(s)	64
XcmI	CCANNNNNNNNNTGG	1 cut(s)	272
XmnI	GAANNNNTTC	1 cut(s)	227
XspI	CTAG	2 cut(s)	65, 137

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.