Prupe.1G571500_v2.0.a1

Pentatricopeptide repeat-containing protein

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp01
Physical Location & Seq
Forward (+)
46585726 .. 46588709
2984 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.1G571500.1

Sequence Viewer

Length: 2046 bp
ATGAGCATGGACGTGCATTCTTTGTTTCGCATACTGCATTCATGCAACACCCACCATTCAATATACTTAGGAAAACAGCTCCACCTTATTTGTCTCAAAAAGGGTATCATAAATTCTGCTGTTGCATTCGGAAACCGTCTTCTACAAATGTATGTGAAATGCGGTAGGATGACCGATGCACTGAAGTTGTTTGATGATATGCCCCAAAGAAACTGTTTCTCGTGGAACACACTGATTGAAGGTTATACAAAATCTGGGGACCTAGAAAAATCTTTACAGTTGTTTGAGGAGATGCCCCGTAAGGATGATTTTACGTGGAATTTGATTGTTTCTGGGTTTGCAAAAGTGGGTAAGCTGGAAATTGCTCATAGTTTGTTTGATGACATGCCTAGGAGAAATTGGGTTGTCTGGAATTCTATGATTCATGGTTATTCCAAGAAGGGATGCCCTAGAGATGCTTTAAGGCTTTTCCAGGATTTGAGTTCGGACGGGTTGACATTGTCACATGAATATAAGTTTGTGTTGGCTACTGTTATTGGAGCTTGTGGTGATTTGTTTGCGCTTGGTTGTGGTAAGCAAGTCCATGCACGCATTTTTATTGATGAAGTGGAATTTGACTCTGTTTTGGCTAGTTCTTTGATTAATTTGTACGGGAAGTGTGGGGATTTAGATAGTGCAAGCCACGTTTTCAATATGATGAAGGAACCAGATGATTACTCTCTCTCAGCCCTGATTTCAGGTTATGGAAACTCTGGTAGAATGGACGATGCAAGAAGAATTTTCGATACGAAAAGTAATCCAGATGTTGCATTATGGAATTCATTGATTTCTGGATATGTTAACAGTAATGAAAACATTGGAGCATTAGTTCTATTCAGTGAAATGCTGAAGAATGGTGTTCAAGGGAATTCATTTACGCTTGCAAGTGTTTTGACTGCCATTAGTATCTCAGGCATCCTTAAACAGGCTGAACAAATGCACACACATGCTTGCAAAGTTGGGCTGATTGGTAATGTTATTGTTGCTAGTGCTATTCTTGATGCATACTCCAAGCGTGGAAGTCCTAACAACGCTTGCAGATTGTTTAGTGAGCTCAAAGCCTTTGACACAATATTGCTTAATTCTATGATCACTGTGTATTCAAATTGCGGCAGAGTTGAAGACGCGAAACAGATTTTCAAGGCAATGCCAAGTAAAAGCTTGATATCATGGAATTCGATGATCGTGGGCCTTAGTCAAAATGGCTGTCCGATTGAAGCATTAGATCTTTTCAGACAGATGAATAAGCTGGACTTGATGATGGACAAGTTTAGCCTCGCTAGTGTGCTCAGTTCATGTGCTACTACATCGTCGCTTGAATATGGTGAACAGGTCTTTGCTAGAACTACCAAAATCGGGCTTGATTGCAATGAAATTGTTTGTAACTCGCTTGTTGATTTGTATTGCAAGTGTGGTTTTGTTAAAAATGGGCGAGAATTATTTGACAGAATGGCCAAGTCTAACGAAGTCGCTTGGAATTCTATGTTGATTGGTTACGCTACAAATGGTCATGGAATTGAAGCACTAGCTCTTTTCAATGAAATGAGGCTTGCTGGTGTGGAACCCAATGAAATTACTTTCACAGGGGTTTTGTCTGCCTGTGACCATTGTGGGTTGGTTGAAGATGGAAGAAAATGGTTTTCTAAGATGAAACAGGACTATCATATCAATCCAGGCATCGAACACTACGCTTGCATGATTGATCTTTTATCCCGTGCTGGTTTCCTCGAGGAAGCAGTGAATCTAGTTGAAGTGATGCCTTTTAAGGCAGATGCAAGCATATTGTCTTCAGTCTTAAGAGGTTGTGTGGCTCATGAACACAAGGATCTTGGCAAGAAAATGGCAGAGCGAATCATTGAGCTTGATTCTGGGAACTCTGGTGCTTATGTTCAGCTGTCTAACATATTTGCAAACGTAAAAGAGTGGGAAGGATCTGCACAGGTTAGACAAGTGATGAGAGATAATAGAGTAGAAAAAAATCCTGGTTTCAGCTGGTCTGATTGTTGA

Protein Analysis

682

Amino Acids

75.61

Weight (kDa)

6.16

Isoelectric Point (pI)

36.48

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0015137)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AbsI CCTCGAGG 1 cut(s) 1766
AccII CGCG 1 cut(s) 1166
AciI CCGC 2 cut(s) 162, 1149
AclWI GGATC 2 cut(s) 1872, 1978
AcoI YGGCCR 1 cut(s) 1491
AcsI RAATTY 9 cut(s) 112, 319, 412, 611, 777, 817, 907, 1213, 1516
AcuI CTGAAG 3 cut(s) 203, 908, 1812
AfaI GTAC 1 cut(s) 650
AfiI CCNNNNNNNGG 2 cut(s) 964, 1395
AflII CTTAAG 1 cut(s) 1834
AjiI CACGTC 1 cut(s) 13
AjnI CCWGG 3 cut(s) 471, 1711, 2020
AloI GAACNNNNNNTCC 2 cut(s) 852, 884
Alw21I GWGCWC 2 cut(s) 1095, 1329
Alw26I GTCTC 1 cut(s) 98
AlwI GGATC 2 cut(s) 1872, 1978
Ama87I CYCGRG 1 cut(s) 1766
AoxI GGCC 2 cut(s) 1228, 1491
ApoI RAATTY 9 cut(s) 112, 319, 412, 611, 777, 817, 907, 1213, 1516
ArsI GACNNNNNNTTYG 2 cut(s) 1231, 1263
AseI ATTAAT 1 cut(s) 642
AspA2I CCTAGG 1 cut(s) 389
AspLEI GCGC 1 cut(s) 562
AspS9I GGNCC 2 cut(s) 259, 1228
AsuHPI GGTGA 2 cut(s) 560, 1376
AvaI CYCGRG 1 cut(s) 1766
AvaII GGWCC 1 cut(s) 259
AvrII CCTAGG 1 cut(s) 389
BalI TGGCCA 1 cut(s) 1493
BanII GRGCYC 1 cut(s) 1095
BauI CACGAG 1 cut(s) 220
BbsI GAAGAC 3 cut(s) 131, 1167, 1818
Bbv12I GWGCWC 2 cut(s) 1095, 1329
BccI CCATC 2 cut(s) 1294, 1658
BciT130I CCWGG 3 cut(s) 473, 1713, 2022
BclI TGATCA 1 cut(s) 1128
BcoDI GTCTC 1 cut(s) 98
BfaI CTAG 9 cut(s) 263, 390, 450, 630, 1026, 1320, 1380, 1565, 1784
BfrI CTTAAG 1 cut(s) 1834
BglII AGATCT 1 cut(s) 1264
BisI GCNGC 1 cut(s) 1150
BlnI CCTAGG 1 cut(s) 389
BlsI GCNGC 1 cut(s) 1151
Bme1390I CCNGG 3 cut(s) 473, 1713, 2022
Bme18I GGWCC 1 cut(s) 259
BmeT110I CYCGRG 1 cut(s) 1766
BmgBI CACGTC 1 cut(s) 13
BmgT120I GGNCC 2 cut(s) 259, 1228
BmiI GGNNCC 3 cut(s) 260, 705, 1602
BmrFI CCNGG 3 cut(s) 473, 1713, 2022
BpiI GAAGAC 3 cut(s) 131, 1167, 1818
BsaAI YACGTR 1 cut(s) 315
BsaJI CCNNGG 1 cut(s) 389
BsaXI ACNNNNNCTCC 2 cut(s) 852, 882
Bsc4I CCNNNNNNNGG 2 cut(s) 964, 1395
Bse3DI GCAATG 2 cut(s) 1191, 1414
BseBI CCWGG 3 cut(s) 473, 1713, 2022
BseDI CCNNGG 1 cut(s) 389
BseGI GGATG 4 cut(s) 174, 310, 449, 954
BseLI CCNNNNNNNGG 2 cut(s) 964, 1395
BseMI GCAATG 2 cut(s) 1191, 1414
BseMII CTCAG 3 cut(s) 738, 963, 1342
BseRI GAGGAG 1 cut(s) 302
BsgI GTGCAG 1 cut(s) 1959
Bsh1236I CGCG 1 cut(s) 1166
BshFI GGCC 2 cut(s) 1230, 1493
BsiHKAI GWGCWC 2 cut(s) 1095, 1329
BsiHKCI CYCGRG 1 cut(s) 1766
BslFI GGGAC 1 cut(s) 272
BslI CCNNNNNNNGG 2 cut(s) 964, 1395
BsmAI GTCTC 1 cut(s) 98
BsmFI GGGAC 1 cut(s) 272
BsmI GAATGC 3 cut(s) 16, 37, 125
BsnI GGCC 2 cut(s) 1230, 1493
BsoBI CYCGRG 1 cut(s) 1766
Bsp1286I GDGCHC 2 cut(s) 1095, 1329
Bsp143I GATC 6 cut(s) 1128, 1221, 1264, 1741, 1864, 1970
BspACI CCGC 2 cut(s) 162, 1149
BspANI GGCC 2 cut(s) 1230, 1493
BspCNI CTCAG 3 cut(s) 737, 962, 1341
BspFNI CGCG 1 cut(s) 1166
BspHI TCATGA 1 cut(s) 1852
BspLI GGNNCC 3 cut(s) 260, 705, 1602
BspPI GGATC 2 cut(s) 1872, 1978
BspTI CTTAAG 1 cut(s) 1834
BsrDI GCAATG 2 cut(s) 1191, 1414
BssECI CCNNGG 1 cut(s) 389
BssMI GATC 6 cut(s) 1128, 1221, 1264, 1741, 1864, 1970
BssSI CACGAG 1 cut(s) 220
BssT1I CCWWGG 1 cut(s) 389
Bst2BI CACGAG 1 cut(s) 220
Bst2UI CCWGG 3 cut(s) 473, 1713, 2022
Bst4CI ACNGT 6 cut(s) 137, 215, 279, 532, 845, 1135
BstAFI CTTAAG 1 cut(s) 1834
BstBAI YACGTR 1 cut(s) 315
BstC8I GCNNGC 8 cut(s) 589, 679, 921, 991, 1075, 1590, 1732, 1816
BstDEI CTNAG 6 cut(s) 67, 724, 949, 1232, 1328, 1683
BstENI CCTNNNNNAGG 1 cut(s) 962
BstF5I GGATG 4 cut(s) 174, 310, 449, 954
BstFNI CGCG 1 cut(s) 1166
BstHHI GCGC 1 cut(s) 562
BstKTI GATC 6 cut(s) 1131, 1224, 1267, 1744, 1867, 1973
BstMAI GTCTC 1 cut(s) 98
BstMBI GATC 6 cut(s) 1128, 1221, 1264, 1741, 1864, 1970
BstNI CCWGG 3 cut(s) 473, 1713, 2022
BstNSI RCATGY 2 cut(s) 388, 989
BstSCI CCNGG 3 cut(s) 471, 1711, 2020
BstUI CGCG 1 cut(s) 1166
BstV2I GAAGAC 3 cut(s) 131, 1167, 1818
BstX2I RGATCY 3 cut(s) 1264, 1864, 1970
BstYI RGATCY 3 cut(s) 1264, 1864, 1970
BsuRI GGCC 2 cut(s) 1230, 1493
BtrI CACGTC 1 cut(s) 13
BtsCI GGATG 4 cut(s) 174, 310, 449, 954
BtsI GCAGTG 1 cut(s) 1782
BtsIMutI CAGTG 5 cut(s) 179, 230, 883, 1131, 1782
Cac8I GCNNGC 8 cut(s) 589, 679, 921, 991, 1075, 1590, 1732, 1816
CciI TCATGA 1 cut(s) 1852
CfoI GCGC 1 cut(s) 562
Cfr13I GGNCC 2 cut(s) 259, 1228
CseI GACGC 1 cut(s) 1172
Csp6I GTAC 1 cut(s) 649
CspCI CAANNNNNGTGG 2 cut(s) 71, 106
CviQI GTAC 1 cut(s) 649
DdeI CTNAG 6 cut(s) 67, 724, 949, 1232, 1328, 1683
DpnI GATC 6 cut(s) 1130, 1223, 1266, 1743, 1866, 1972
DpnII GATC 6 cut(s) 1128, 1221, 1264, 1741, 1864, 1970
EaeI YGGCCR 1 cut(s) 1491
Ecl136II GAGCTC 1 cut(s) 1093
Eco130I CCWWGG 1 cut(s) 389
Eco24I GRGCYC 1 cut(s) 1095
Eco32I GATATC 1 cut(s) 1206
Eco47I GGWCC 1 cut(s) 259
Eco53kI GAGCTC 1 cut(s) 1093
Eco57I CTGAAG 3 cut(s) 203, 908, 1812
Eco88I CYCGRG 1 cut(s) 1766
EcoICRI GAGCTC 1 cut(s) 1093
EcoNI CCTNNNNNAGG 1 cut(s) 962
EcoO109I RGGNCCY 1 cut(s) 259
EcoRI GAATTC 5 cut(s) 412, 817, 907, 1213, 1516
EcoRII CCWGG 3 cut(s) 471, 1711, 2020
EcoRV GATATC 1 cut(s) 1206
EcoT14I CCWWGG 1 cut(s) 389
EcoT22I ATGCAT 1 cut(s) 1045
EcoT38I GRGCYC 1 cut(s) 1095
ErhI CCWWGG 1 cut(s) 389
FalI AAGNNNNNCTT 2 cut(s) 1277, 1309
FaqI GGGAC 1 cut(s) 272
FbaI TGATCA 1 cut(s) 1128
Fnu4HI GCNGC 1 cut(s) 1150
FokI GGATG 4 cut(s) 181, 317, 456, 941
FriOI GRGCYC 1 cut(s) 1095
Fsp4HI GCNGC 1 cut(s) 1150
FspBI CTAG 9 cut(s) 263, 390, 450, 630, 1026, 1320, 1380, 1565, 1784
GlaI GCGC 1 cut(s) 561
GluI GCNGC 1 cut(s) 1150
HaeIII GGCC 2 cut(s) 1230, 1493
HgaI GACGC 1 cut(s) 1172
HhaI GCGC 1 cut(s) 562
Hin6I GCGC 1 cut(s) 560
HinP1I GCGC 1 cut(s) 560
HincII GTYRAC 2 cut(s) 495, 841
HindII GTYRAC 2 cut(s) 495, 841
HindIII AAGCTT 1 cut(s) 1198
HinfI GANTC 5 cut(s) 421, 617, 1780, 1890, 1904
HpaI GTTAAC 1 cut(s) 841
HphI GGTGA 2 cut(s) 560, 1376
Hpy166II GTNNAC 3 cut(s) 495, 841, 1367
Hpy188I TCNGA 5 cut(s) 131, 487, 1251, 1274, 2038
Hpy188III TCNNGA 5 cut(s) 409, 800, 831, 1037, 1853
Hpy8I GTNNAC 3 cut(s) 495, 841, 1367
Hpy99I CGWCG 1 cut(s) 1354
HpyAV CCTTC 4 cut(s) 233, 433, 694, 1961
HpyCH4III ACNGT 6 cut(s) 137, 215, 279, 532, 845, 1135
HpyCH4IV ACGT 4 cut(s) 12, 314, 684, 1953
HpyF3I CTNAG 6 cut(s) 67, 724, 949, 1232, 1328, 1683
HpySE526I ACGT 4 cut(s) 12, 314, 684, 1953
HspAI GCGC 1 cut(s) 560
Ksp22I TGATCA 1 cut(s) 1128
KspAI GTTAAC 1 cut(s) 841
Kzo9I GATC 6 cut(s) 1128, 1221, 1264, 1741, 1864, 1970
LmnI GCTCC 3 cut(s) 84, 539, 860
MaeI CTAG 9 cut(s) 263, 390, 450, 630, 1026, 1320, 1380, 1565, 1784
MaeII ACGT 4 cut(s) 12, 314, 684, 1953
MaeIII GTNAC 4 cut(s) 501, 1421, 1532, 1640
MalI GATC 6 cut(s) 1130, 1223, 1266, 1743, 1866, 1972
MboI GATC 6 cut(s) 1128, 1221, 1264, 1741, 1864, 1970
MboII GAAGA 7 cut(s) 131, 786, 901, 1172, 1673, 1680, 1818
MflI RGATCY 3 cut(s) 1264, 1864, 1970
MhlI GDGCHC 2 cut(s) 1095, 1329
MlsI TGGCCA 1 cut(s) 1493
MluNI TGGCCA 1 cut(s) 1493
MlyI GAGTC 1 cut(s) 611
MnlI CCTC 6 cut(s) 280, 1325, 1578, 1762, 1775, 1832
Mox20I TGGCCA 1 cut(s) 1493
Mph1103I ATGCAT 1 cut(s) 1045
MscI TGGCCA 1 cut(s) 1493
MseI TTAA 8 cut(s) 461, 642, 840, 960, 1119, 1461, 1803, 1835
MslI CAYNNNNRTG 2 cut(s) 11, 984
Msp20I TGGCCA 1 cut(s) 1493
MspA1I CMGCKG 2 cut(s) 1933, 2031
MspCI CTTAAG 1 cut(s) 1834
MspR9I CCNGG 3 cut(s) 473, 1713, 2022
Mva1269I GAATGC 3 cut(s) 16, 37, 125
MvaI CCWGG 3 cut(s) 473, 1713, 2022
MvnI CGCG 1 cut(s) 1166
NdeII GATC 6 cut(s) 1128, 1221, 1264, 1741, 1864, 1970
NlaIV GGNNCC 3 cut(s) 260, 705, 1602
NmuCI GTSAC 2 cut(s) 501, 1640
NsiI ATGCAT 1 cut(s) 1045
NspI RCATGY 2 cut(s) 388, 989
PaeR7I CTCGAG 1 cut(s) 1766
PagI TCATGA 1 cut(s) 1852
PctI GAATGC 3 cut(s) 16, 37, 125
PfeI GAWTC 4 cut(s) 421, 1780, 1890, 1904
PflFI GACNNNGTC 1 cut(s) 499
PfoI TCCNGGA 1 cut(s) 471
PkrI GCNGC 1 cut(s) 1151
PleI GAGTC 1 cut(s) 611
PpsI GAGTC 1 cut(s) 611
Ppu21I YACGTR 1 cut(s) 315
PpuMI RGGWCCY 1 cut(s) 259
PshBI ATTAAT 1 cut(s) 642
Psp124BI GAGCTC 1 cut(s) 1095
Psp5II RGGWCCY 1 cut(s) 259
Psp6I CCWGG 3 cut(s) 471, 1711, 2020
PspGI CCWGG 3 cut(s) 471, 1711, 2020
PspN4I GGNNCC 3 cut(s) 260, 705, 1602
PspPI GGNCC 2 cut(s) 259, 1228
PspPPI RGGWCCY 1 cut(s) 259
PspXI VCTCGAGB 1 cut(s) 1766
PsuI RGATCY 3 cut(s) 1264, 1864, 1970
PsyI GACNNNGTC 1 cut(s) 499
PvuII CAGCTG 2 cut(s) 1933, 2031
RsaI GTAC 1 cut(s) 650
RsaNI GTAC 1 cut(s) 649
RseI CAYNNNNRTG 2 cut(s) 11, 984
SacI GAGCTC 1 cut(s) 1095
SaqAI TTAA 8 cut(s) 461, 642, 840, 960, 1119, 1461, 1803, 1835
SatI GCNGC 1 cut(s) 1150
Sau3AI GATC 6 cut(s) 1128, 1221, 1264, 1741, 1864, 1970
Sau96I GGNCC 2 cut(s) 259, 1228
SchI GAGTC 1 cut(s) 611
ScrFI CCNGG 3 cut(s) 473, 1713, 2022
SduI GDGCHC 2 cut(s) 1095, 1329
Sfr274I CTCGAG 1 cut(s) 1766
SinI GGWCC 1 cut(s) 259
SlaI CTCGAG 1 cut(s) 1766
SmiMI CAYNNNNRTG 2 cut(s) 11, 984
SmlI CTYRAG 2 cut(s) 1766, 1834
SmoI CTYRAG 2 cut(s) 1766, 1834
SsiI CCGC 2 cut(s) 162, 1149
SspI AATATT 1 cut(s) 1113
SspMI CTAG 9 cut(s) 263, 390, 450, 630, 1026, 1320, 1380, 1565, 1784
SstI GAGCTC 1 cut(s) 1095
StyD4I CCNGG 3 cut(s) 471, 1711, 2020
StyI CCWWGG 1 cut(s) 389
TaaI ACNGT 6 cut(s) 137, 215, 279, 532, 845, 1135
TaiI ACGT 4 cut(s) 15, 317, 687, 1956
TaqI TCGA 4 cut(s) 783, 1217, 1719, 1767
TaqII GACCGA 1 cut(s) 188
TauI GCSGC 1 cut(s) 1152
TfiI GAWTC 4 cut(s) 421, 1780, 1890, 1904
Tru1I TTAA 8 cut(s) 461, 642, 840, 960, 1119, 1461, 1803, 1835
Tru9I TTAA 8 cut(s) 461, 642, 840, 960, 1119, 1461, 1803, 1835
TscAI CASTG 5 cut(s) 186, 237, 883, 1138, 1782
TseFI GTSAC 2 cut(s) 501, 1640
Tsp45I GTSAC 2 cut(s) 501, 1640
TspRI CASTG 5 cut(s) 186, 237, 883, 1138, 1782
Tth111I GACNNNGTC 1 cut(s) 499
Vha464I CTTAAG 1 cut(s) 1834
VpaK11BI GGWCC 1 cut(s) 259
VspI ATTAAT 1 cut(s) 642
XagI CCTNNNNNAGG 1 cut(s) 962
XapI RAATTY 9 cut(s) 112, 319, 412, 611, 777, 817, 907, 1213, 1516
XceI RCATGY 2 cut(s) 388, 989
XhoI CTCGAG 1 cut(s) 1766
XmaJI CCTAGG 1 cut(s) 389
XspI CTAG 9 cut(s) 263, 390, 450, 630, 1026, 1320, 1380, 1565, 1784
Zsp2I ATGCAT 1 cut(s) 1045
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.