Pentatricopeptide repeat-containing protein
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT1G77010 |
| fragaria_vesca | FvH4_5g29130 |
| malus_domestica | MD08G1235400.v1.1 |
| prunus_persica | Prupe.1G571500_v2.0.a1 |
| rosa_chinensis | RchiOBHm_Chr7g0221791 |
| rosa_laevigata | RLG00000002123 |
| rosa_multiflora | Rmu_sc0001922.1_g000011 Rmu_sc0001922.1_g000012 |
| rosa_roxburghii | Rroxscaffold_3G00237720 |
| rosa_rugosa | Rorug07G0203300 Rorug07G0203400 |
| rosa_samantha | Rh7AG344300 Rh7BG335100 Rh7CG361700 Rh7DG342100 |
| rosa_wichuraiana | Rw7G029200 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AbsI | CCTCGAGG | 1 cut(s) | 1766 |
| AccII | CGCG | 1 cut(s) | 1166 |
| AciI | CCGC | 2 cut(s) | 162, 1149 |
| AclWI | GGATC | 2 cut(s) | 1872, 1978 |
| AcoI | YGGCCR | 1 cut(s) | 1491 |
| AcsI | RAATTY | 9 cut(s) | 112, 319, 412, 611, 777, 817, 907, 1213, 1516 |
| AcuI | CTGAAG | 3 cut(s) | 203, 908, 1812 |
| AfaI | GTAC | 1 cut(s) | 650 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 964, 1395 |
| AflII | CTTAAG | 1 cut(s) | 1834 |
| AjiI | CACGTC | 1 cut(s) | 13 |
| AjnI | CCWGG | 3 cut(s) | 471, 1711, 2020 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 852, 884 |
| Alw21I | GWGCWC | 2 cut(s) | 1095, 1329 |
| Alw26I | GTCTC | 1 cut(s) | 98 |
| AlwI | GGATC | 2 cut(s) | 1872, 1978 |
| Ama87I | CYCGRG | 1 cut(s) | 1766 |
| AoxI | GGCC | 2 cut(s) | 1228, 1491 |
| ApoI | RAATTY | 9 cut(s) | 112, 319, 412, 611, 777, 817, 907, 1213, 1516 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 1231, 1263 |
| AseI | ATTAAT | 1 cut(s) | 642 |
| AspA2I | CCTAGG | 1 cut(s) | 389 |
| AspLEI | GCGC | 1 cut(s) | 562 |
| AspS9I | GGNCC | 2 cut(s) | 259, 1228 |
| AsuHPI | GGTGA | 2 cut(s) | 560, 1376 |
| AvaI | CYCGRG | 1 cut(s) | 1766 |
| AvaII | GGWCC | 1 cut(s) | 259 |
| AvrII | CCTAGG | 1 cut(s) | 389 |
| BalI | TGGCCA | 1 cut(s) | 1493 |
| BanII | GRGCYC | 1 cut(s) | 1095 |
| BauI | CACGAG | 1 cut(s) | 220 |
| BbsI | GAAGAC | 3 cut(s) | 131, 1167, 1818 |
| Bbv12I | GWGCWC | 2 cut(s) | 1095, 1329 |
| BccI | CCATC | 2 cut(s) | 1294, 1658 |
| BciT130I | CCWGG | 3 cut(s) | 473, 1713, 2022 |
| BclI | TGATCA | 1 cut(s) | 1128 |
| BcoDI | GTCTC | 1 cut(s) | 98 |
| BfaI | CTAG | 9 cut(s) | 263, 390, 450, 630, 1026, 1320, 1380, 1565, 1784 |
| BfrI | CTTAAG | 1 cut(s) | 1834 |
| BglII | AGATCT | 1 cut(s) | 1264 |
| BisI | GCNGC | 1 cut(s) | 1150 |
| BlnI | CCTAGG | 1 cut(s) | 389 |
| BlsI | GCNGC | 1 cut(s) | 1151 |
| Bme1390I | CCNGG | 3 cut(s) | 473, 1713, 2022 |
| Bme18I | GGWCC | 1 cut(s) | 259 |
| BmeT110I | CYCGRG | 1 cut(s) | 1766 |
| BmgBI | CACGTC | 1 cut(s) | 13 |
| BmgT120I | GGNCC | 2 cut(s) | 259, 1228 |
| BmiI | GGNNCC | 3 cut(s) | 260, 705, 1602 |
| BmrFI | CCNGG | 3 cut(s) | 473, 1713, 2022 |
| BpiI | GAAGAC | 3 cut(s) | 131, 1167, 1818 |
| BsaAI | YACGTR | 1 cut(s) | 315 |
| BsaJI | CCNNGG | 1 cut(s) | 389 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 852, 882 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 964, 1395 |
| Bse3DI | GCAATG | 2 cut(s) | 1191, 1414 |
| BseBI | CCWGG | 3 cut(s) | 473, 1713, 2022 |
| BseDI | CCNNGG | 1 cut(s) | 389 |
| BseGI | GGATG | 4 cut(s) | 174, 310, 449, 954 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 964, 1395 |
| BseMI | GCAATG | 2 cut(s) | 1191, 1414 |
| BseMII | CTCAG | 3 cut(s) | 738, 963, 1342 |
| BseRI | GAGGAG | 1 cut(s) | 302 |
| BsgI | GTGCAG | 1 cut(s) | 1959 |
| Bsh1236I | CGCG | 1 cut(s) | 1166 |
| BshFI | GGCC | 2 cut(s) | 1230, 1493 |
| BsiHKAI | GWGCWC | 2 cut(s) | 1095, 1329 |
| BsiHKCI | CYCGRG | 1 cut(s) | 1766 |
| BslFI | GGGAC | 1 cut(s) | 272 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 964, 1395 |
| BsmAI | GTCTC | 1 cut(s) | 98 |
| BsmFI | GGGAC | 1 cut(s) | 272 |
| BsmI | GAATGC | 3 cut(s) | 16, 37, 125 |
| BsnI | GGCC | 2 cut(s) | 1230, 1493 |
| BsoBI | CYCGRG | 1 cut(s) | 1766 |
| Bsp1286I | GDGCHC | 2 cut(s) | 1095, 1329 |
| Bsp143I | GATC | 6 cut(s) | 1128, 1221, 1264, 1741, 1864, 1970 |
| BspACI | CCGC | 2 cut(s) | 162, 1149 |
| BspANI | GGCC | 2 cut(s) | 1230, 1493 |
| BspCNI | CTCAG | 3 cut(s) | 737, 962, 1341 |
| BspFNI | CGCG | 1 cut(s) | 1166 |
| BspHI | TCATGA | 1 cut(s) | 1852 |
| BspLI | GGNNCC | 3 cut(s) | 260, 705, 1602 |
| BspPI | GGATC | 2 cut(s) | 1872, 1978 |
| BspTI | CTTAAG | 1 cut(s) | 1834 |
| BsrDI | GCAATG | 2 cut(s) | 1191, 1414 |
| BssECI | CCNNGG | 1 cut(s) | 389 |
| BssMI | GATC | 6 cut(s) | 1128, 1221, 1264, 1741, 1864, 1970 |
| BssSI | CACGAG | 1 cut(s) | 220 |
| BssT1I | CCWWGG | 1 cut(s) | 389 |
| Bst2BI | CACGAG | 1 cut(s) | 220 |
| Bst2UI | CCWGG | 3 cut(s) | 473, 1713, 2022 |
| Bst4CI | ACNGT | 6 cut(s) | 137, 215, 279, 532, 845, 1135 |
| BstAFI | CTTAAG | 1 cut(s) | 1834 |
| BstBAI | YACGTR | 1 cut(s) | 315 |
| BstC8I | GCNNGC | 8 cut(s) | 589, 679, 921, 991, 1075, 1590, 1732, 1816 |
| BstDEI | CTNAG | 6 cut(s) | 67, 724, 949, 1232, 1328, 1683 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 962 |
| BstF5I | GGATG | 4 cut(s) | 174, 310, 449, 954 |
| BstFNI | CGCG | 1 cut(s) | 1166 |
| BstHHI | GCGC | 1 cut(s) | 562 |
| BstKTI | GATC | 6 cut(s) | 1131, 1224, 1267, 1744, 1867, 1973 |
| BstMAI | GTCTC | 1 cut(s) | 98 |
| BstMBI | GATC | 6 cut(s) | 1128, 1221, 1264, 1741, 1864, 1970 |
| BstNI | CCWGG | 3 cut(s) | 473, 1713, 2022 |
| BstNSI | RCATGY | 2 cut(s) | 388, 989 |
| BstSCI | CCNGG | 3 cut(s) | 471, 1711, 2020 |
| BstUI | CGCG | 1 cut(s) | 1166 |
| BstV2I | GAAGAC | 3 cut(s) | 131, 1167, 1818 |
| BstX2I | RGATCY | 3 cut(s) | 1264, 1864, 1970 |
| BstYI | RGATCY | 3 cut(s) | 1264, 1864, 1970 |
| BsuRI | GGCC | 2 cut(s) | 1230, 1493 |
| BtrI | CACGTC | 1 cut(s) | 13 |
| BtsCI | GGATG | 4 cut(s) | 174, 310, 449, 954 |
| BtsI | GCAGTG | 1 cut(s) | 1782 |
| BtsIMutI | CAGTG | 5 cut(s) | 179, 230, 883, 1131, 1782 |
| Cac8I | GCNNGC | 8 cut(s) | 589, 679, 921, 991, 1075, 1590, 1732, 1816 |
| CciI | TCATGA | 1 cut(s) | 1852 |
| CfoI | GCGC | 1 cut(s) | 562 |
| Cfr13I | GGNCC | 2 cut(s) | 259, 1228 |
| CseI | GACGC | 1 cut(s) | 1172 |
| Csp6I | GTAC | 1 cut(s) | 649 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 71, 106 |
| CviQI | GTAC | 1 cut(s) | 649 |
| DdeI | CTNAG | 6 cut(s) | 67, 724, 949, 1232, 1328, 1683 |
| DpnI | GATC | 6 cut(s) | 1130, 1223, 1266, 1743, 1866, 1972 |
| DpnII | GATC | 6 cut(s) | 1128, 1221, 1264, 1741, 1864, 1970 |
| EaeI | YGGCCR | 1 cut(s) | 1491 |
| Ecl136II | GAGCTC | 1 cut(s) | 1093 |
| Eco130I | CCWWGG | 1 cut(s) | 389 |
| Eco24I | GRGCYC | 1 cut(s) | 1095 |
| Eco32I | GATATC | 1 cut(s) | 1206 |
| Eco47I | GGWCC | 1 cut(s) | 259 |
| Eco53kI | GAGCTC | 1 cut(s) | 1093 |
| Eco57I | CTGAAG | 3 cut(s) | 203, 908, 1812 |
| Eco88I | CYCGRG | 1 cut(s) | 1766 |
| EcoICRI | GAGCTC | 1 cut(s) | 1093 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 962 |
| EcoO109I | RGGNCCY | 1 cut(s) | 259 |
| EcoRI | GAATTC | 5 cut(s) | 412, 817, 907, 1213, 1516 |
| EcoRII | CCWGG | 3 cut(s) | 471, 1711, 2020 |
| EcoRV | GATATC | 1 cut(s) | 1206 |
| EcoT14I | CCWWGG | 1 cut(s) | 389 |
| EcoT22I | ATGCAT | 1 cut(s) | 1045 |
| EcoT38I | GRGCYC | 1 cut(s) | 1095 |
| ErhI | CCWWGG | 1 cut(s) | 389 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 1277, 1309 |
| FaqI | GGGAC | 1 cut(s) | 272 |
| FbaI | TGATCA | 1 cut(s) | 1128 |
| Fnu4HI | GCNGC | 1 cut(s) | 1150 |
| FokI | GGATG | 4 cut(s) | 181, 317, 456, 941 |
| FriOI | GRGCYC | 1 cut(s) | 1095 |
| Fsp4HI | GCNGC | 1 cut(s) | 1150 |
| FspBI | CTAG | 9 cut(s) | 263, 390, 450, 630, 1026, 1320, 1380, 1565, 1784 |
| GlaI | GCGC | 1 cut(s) | 561 |
| GluI | GCNGC | 1 cut(s) | 1150 |
| HaeIII | GGCC | 2 cut(s) | 1230, 1493 |
| HgaI | GACGC | 1 cut(s) | 1172 |
| HhaI | GCGC | 1 cut(s) | 562 |
| Hin6I | GCGC | 1 cut(s) | 560 |
| HinP1I | GCGC | 1 cut(s) | 560 |
| HincII | GTYRAC | 2 cut(s) | 495, 841 |
| HindII | GTYRAC | 2 cut(s) | 495, 841 |
| HindIII | AAGCTT | 1 cut(s) | 1198 |
| HinfI | GANTC | 5 cut(s) | 421, 617, 1780, 1890, 1904 |
| HpaI | GTTAAC | 1 cut(s) | 841 |
| HphI | GGTGA | 2 cut(s) | 560, 1376 |
| Hpy166II | GTNNAC | 3 cut(s) | 495, 841, 1367 |
| Hpy188I | TCNGA | 5 cut(s) | 131, 487, 1251, 1274, 2038 |
| Hpy188III | TCNNGA | 5 cut(s) | 409, 800, 831, 1037, 1853 |
| Hpy8I | GTNNAC | 3 cut(s) | 495, 841, 1367 |
| Hpy99I | CGWCG | 1 cut(s) | 1354 |
| HpyAV | CCTTC | 4 cut(s) | 233, 433, 694, 1961 |
| HpyCH4III | ACNGT | 6 cut(s) | 137, 215, 279, 532, 845, 1135 |
| HpyCH4IV | ACGT | 4 cut(s) | 12, 314, 684, 1953 |
| HpyF3I | CTNAG | 6 cut(s) | 67, 724, 949, 1232, 1328, 1683 |
| HpySE526I | ACGT | 4 cut(s) | 12, 314, 684, 1953 |
| HspAI | GCGC | 1 cut(s) | 560 |
| Ksp22I | TGATCA | 1 cut(s) | 1128 |
| KspAI | GTTAAC | 1 cut(s) | 841 |
| Kzo9I | GATC | 6 cut(s) | 1128, 1221, 1264, 1741, 1864, 1970 |
| LmnI | GCTCC | 3 cut(s) | 84, 539, 860 |
| MaeI | CTAG | 9 cut(s) | 263, 390, 450, 630, 1026, 1320, 1380, 1565, 1784 |
| MaeII | ACGT | 4 cut(s) | 12, 314, 684, 1953 |
| MaeIII | GTNAC | 4 cut(s) | 501, 1421, 1532, 1640 |
| MalI | GATC | 6 cut(s) | 1130, 1223, 1266, 1743, 1866, 1972 |
| MboI | GATC | 6 cut(s) | 1128, 1221, 1264, 1741, 1864, 1970 |
| MboII | GAAGA | 7 cut(s) | 131, 786, 901, 1172, 1673, 1680, 1818 |
| MflI | RGATCY | 3 cut(s) | 1264, 1864, 1970 |
| MhlI | GDGCHC | 2 cut(s) | 1095, 1329 |
| MlsI | TGGCCA | 1 cut(s) | 1493 |
| MluNI | TGGCCA | 1 cut(s) | 1493 |
| MlyI | GAGTC | 1 cut(s) | 611 |
| MnlI | CCTC | 6 cut(s) | 280, 1325, 1578, 1762, 1775, 1832 |
| Mox20I | TGGCCA | 1 cut(s) | 1493 |
| Mph1103I | ATGCAT | 1 cut(s) | 1045 |
| MscI | TGGCCA | 1 cut(s) | 1493 |
| MseI | TTAA | 8 cut(s) | 461, 642, 840, 960, 1119, 1461, 1803, 1835 |
| MslI | CAYNNNNRTG | 2 cut(s) | 11, 984 |
| Msp20I | TGGCCA | 1 cut(s) | 1493 |
| MspA1I | CMGCKG | 2 cut(s) | 1933, 2031 |
| MspCI | CTTAAG | 1 cut(s) | 1834 |
| MspR9I | CCNGG | 3 cut(s) | 473, 1713, 2022 |
| Mva1269I | GAATGC | 3 cut(s) | 16, 37, 125 |
| MvaI | CCWGG | 3 cut(s) | 473, 1713, 2022 |
| MvnI | CGCG | 1 cut(s) | 1166 |
| NdeII | GATC | 6 cut(s) | 1128, 1221, 1264, 1741, 1864, 1970 |
| NlaIV | GGNNCC | 3 cut(s) | 260, 705, 1602 |
| NmuCI | GTSAC | 2 cut(s) | 501, 1640 |
| NsiI | ATGCAT | 1 cut(s) | 1045 |
| NspI | RCATGY | 2 cut(s) | 388, 989 |
| PaeR7I | CTCGAG | 1 cut(s) | 1766 |
| PagI | TCATGA | 1 cut(s) | 1852 |
| PctI | GAATGC | 3 cut(s) | 16, 37, 125 |
| PfeI | GAWTC | 4 cut(s) | 421, 1780, 1890, 1904 |
| PflFI | GACNNNGTC | 1 cut(s) | 499 |
| PfoI | TCCNGGA | 1 cut(s) | 471 |
| PkrI | GCNGC | 1 cut(s) | 1151 |
| PleI | GAGTC | 1 cut(s) | 611 |
| PpsI | GAGTC | 1 cut(s) | 611 |
| Ppu21I | YACGTR | 1 cut(s) | 315 |
| PpuMI | RGGWCCY | 1 cut(s) | 259 |
| PshBI | ATTAAT | 1 cut(s) | 642 |
| Psp124BI | GAGCTC | 1 cut(s) | 1095 |
| Psp5II | RGGWCCY | 1 cut(s) | 259 |
| Psp6I | CCWGG | 3 cut(s) | 471, 1711, 2020 |
| PspGI | CCWGG | 3 cut(s) | 471, 1711, 2020 |
| PspN4I | GGNNCC | 3 cut(s) | 260, 705, 1602 |
| PspPI | GGNCC | 2 cut(s) | 259, 1228 |
| PspPPI | RGGWCCY | 1 cut(s) | 259 |
| PspXI | VCTCGAGB | 1 cut(s) | 1766 |
| PsuI | RGATCY | 3 cut(s) | 1264, 1864, 1970 |
| PsyI | GACNNNGTC | 1 cut(s) | 499 |
| PvuII | CAGCTG | 2 cut(s) | 1933, 2031 |
| RsaI | GTAC | 1 cut(s) | 650 |
| RsaNI | GTAC | 1 cut(s) | 649 |
| RseI | CAYNNNNRTG | 2 cut(s) | 11, 984 |
| SacI | GAGCTC | 1 cut(s) | 1095 |
| SaqAI | TTAA | 8 cut(s) | 461, 642, 840, 960, 1119, 1461, 1803, 1835 |
| SatI | GCNGC | 1 cut(s) | 1150 |
| Sau3AI | GATC | 6 cut(s) | 1128, 1221, 1264, 1741, 1864, 1970 |
| Sau96I | GGNCC | 2 cut(s) | 259, 1228 |
| SchI | GAGTC | 1 cut(s) | 611 |
| ScrFI | CCNGG | 3 cut(s) | 473, 1713, 2022 |
| SduI | GDGCHC | 2 cut(s) | 1095, 1329 |
| Sfr274I | CTCGAG | 1 cut(s) | 1766 |
| SinI | GGWCC | 1 cut(s) | 259 |
| SlaI | CTCGAG | 1 cut(s) | 1766 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 11, 984 |
| SmlI | CTYRAG | 2 cut(s) | 1766, 1834 |
| SmoI | CTYRAG | 2 cut(s) | 1766, 1834 |
| SsiI | CCGC | 2 cut(s) | 162, 1149 |
| SspI | AATATT | 1 cut(s) | 1113 |
| SspMI | CTAG | 9 cut(s) | 263, 390, 450, 630, 1026, 1320, 1380, 1565, 1784 |
| SstI | GAGCTC | 1 cut(s) | 1095 |
| StyD4I | CCNGG | 3 cut(s) | 471, 1711, 2020 |
| StyI | CCWWGG | 1 cut(s) | 389 |
| TaaI | ACNGT | 6 cut(s) | 137, 215, 279, 532, 845, 1135 |
| TaiI | ACGT | 4 cut(s) | 15, 317, 687, 1956 |
| TaqI | TCGA | 4 cut(s) | 783, 1217, 1719, 1767 |
| TaqII | GACCGA | 1 cut(s) | 188 |
| TauI | GCSGC | 1 cut(s) | 1152 |
| TfiI | GAWTC | 4 cut(s) | 421, 1780, 1890, 1904 |
| Tru1I | TTAA | 8 cut(s) | 461, 642, 840, 960, 1119, 1461, 1803, 1835 |
| Tru9I | TTAA | 8 cut(s) | 461, 642, 840, 960, 1119, 1461, 1803, 1835 |
| TscAI | CASTG | 5 cut(s) | 186, 237, 883, 1138, 1782 |
| TseFI | GTSAC | 2 cut(s) | 501, 1640 |
| Tsp45I | GTSAC | 2 cut(s) | 501, 1640 |
| TspRI | CASTG | 5 cut(s) | 186, 237, 883, 1138, 1782 |
| Tth111I | GACNNNGTC | 1 cut(s) | 499 |
| Vha464I | CTTAAG | 1 cut(s) | 1834 |
| VpaK11BI | GGWCC | 1 cut(s) | 259 |
| VspI | ATTAAT | 1 cut(s) | 642 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 962 |
| XapI | RAATTY | 9 cut(s) | 112, 319, 412, 611, 777, 817, 907, 1213, 1516 |
| XceI | RCATGY | 2 cut(s) | 388, 989 |
| XhoI | CTCGAG | 1 cut(s) | 1766 |
| XmaJI | CCTAGG | 1 cut(s) | 389 |
| XspI | CTAG | 9 cut(s) | 263, 390, 450, 630, 1026, 1320, 1380, 1565, 1784 |
| Zsp2I | ATGCAT | 1 cut(s) | 1045 |