Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001922.1

Orthogroup ID

OG0015137

Physical Location & Seq

Genomic Coordinates Forward (+)

68831 .. 69994

Gene Structure 1164 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0001922.1_g000012.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1164 bp

atgctgactaatggtgttcgtgggaattcttttacgctggcaagtgttttgggtgccattagtgtctcaggcatccttaaacatgctcaacaaatgcacacatttgcctgcaaacttgggctgattggtgacgttattgctgctagtgctatgcttgatgcatactccaagtgtggaagccctgatgatgcttgcagattgtttagtgaactcaaagtctttgacactatattgcttaattcgatgatcactgtgtattccaattgtggaagagttgaagatgcaaaacagatttttatggccatgccaagtaaaagcataatatcatggaattcgatgatggttggccttagtcaaaacggttgtccaattgaagcattagatcttttcagacaaatcaatgtgctagacttgagaatggacaagtttagcctggctagtgtgctaagttcatgtgctagtatttcctcacttgaatatggtgaacaggtttttgccagagccaccatcattgggcttgatgacgatgaaattgtctccaactcacttgttgatttctattgcaagtgtggtcttgttaaaaatgcacgaaagctgtttgacaggatggtgaagtctaatgaagtggcttggaattctatgctaattggatatgcaacaaacggttatggaagtgaagcactggctcttttcgatgaaatgaggcttgctgatgtgaaacccaatgaaattacatttacaggggttttgtctgcctgtgatcattgtgggttggtcgaagagggaagaaaatggttttctaagatgaaacaggactatggtattgatccacatattgaacactatgcttgcacaattgatcttttttcccgagctggttgccttgaggaagcaattagtctagtcgaagcaatgccctttaaattagacgccagcatattgtcatcagtcttgaggggttgtgtgtctcatggacacaaggatcttgcgaagaaaatggcggagcgaatcattgagcttgatcctgagaattcaggtgcttatgtacagctttctaatgcacttgcaggtgtcaatgagtgggaaggatctgcacagattagacaaattatgagagataagagcataccaaaaaatcctgctttcagctggtctgatcgttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR Sec16

Protein Analysis

387

Amino Acids

42.45

Weight (kDa)

5.37

Isoelectric Point (pI)

38.21

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0015137)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G77010
fragaria_vesca	FvH4_5g29130
malus_domestica	MD08G1235400.v1.1
prunus_persica	Prupe.1G571500_v2.0.a1
rosa_chinensis	RchiOBHm_Chr7g0221791
rosa_laevigata	RLG00000002123
rosa_multiflora	Rmu_sc0001922.1_g000011 Rmu_sc0001922.1_g000012
rosa_roxburghii	Rroxscaffold_3G00237720
rosa_rugosa	Rorug07G0203300 Rorug07G0203400
rosa_samantha	Rh7AG344300 Rh7BG335100 Rh7CG361700 Rh7DG342100
rosa_wichuraiana	Rw7G029200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	1058
Acc36I	ACCTGC	1 cut(s)	1058
AccB1I	GGYRCC	1 cut(s)	53
AciI	CCGC	1 cut(s)	1001
AclWI	GGATC	4 cut(s)	821, 990, 1016, 1096
AcoI	YGGCCR	1 cut(s)	300
AcsI	RAATTY	4 cut(s)	25, 331, 634, 1030
AcyI	GRCGYC	1 cut(s)	930
AfaI	GTAC	1 cut(s)	1047
AfiI	CCNNNNNNNGG	1 cut(s)	513
AgsI	TTSAA	4 cut(s)	278, 374, 476, 839
AjnI	CCWGG	1 cut(s)	432
AluBI	AGCT	5 cut(s)	595, 875, 1018, 1051, 1149
AluI	AGCT	5 cut(s)	595, 875, 1018, 1051, 1149
Alw26I	GTCTC	3 cut(s)	70, 541, 972
AlwI	GGATC	4 cut(s)	821, 990, 1016, 1096
Ama87I	CYCGRG	1 cut(s)	870
AoxI	GGCC	2 cut(s)	300, 346
ApeKI	GCWGC	1 cut(s)	140
ApoI	RAATTY	4 cut(s)	25, 331, 634, 1030
ArsI	GACNNNNNNTTYG	2 cut(s)	349, 381
AsuHPI	GGTGA	3 cut(s)	140, 494, 622
AvaI	CYCGRG	1 cut(s)	870
BalI	TGGCCA	1 cut(s)	302
BanI	GGYRCC	1 cut(s)	53
BbvI	GCAGC	1 cut(s)	127
BccI	CCATC	3 cut(s)	334, 515, 601
BcgI	CGANNNNNNTGC	2 cut(s)	861, 895
BciT130I	CCWGG	1 cut(s)	434
BclI	TGATCA	2 cut(s)	246, 760
BcoDI	GTCTC	3 cut(s)	70, 541, 972
BfaI	CTAG	5 cut(s)	144, 407, 438, 459, 902
BfuAI	ACCTGC	1 cut(s)	1058
BglII	AGATCT	1 cut(s)	382
BisI	GCNGC	1 cut(s)	141
BlsI	GCNGC	1 cut(s)	142
Bme1390I	CCNGG	1 cut(s)	434
BmeT110I	CYCGRG	1 cut(s)	870
BmiI	GGNNCC	1 cut(s)	55
BmrFI	CCNGG	1 cut(s)	434
BmsI	GCATC	4 cut(s)	81, 148, 178, 271
BpuEI	CTTGAG	3 cut(s)	433, 905, 973
BsaHI	GRCGYC	1 cut(s)	930
Bsc4I	CCNNNNNNNGG	1 cut(s)	513
Bse1I	ACTGG	1 cut(s)	687
Bse3DI	GCAATG	1 cut(s)	918
BseBI	CCWGG	1 cut(s)	434
BseGI	GGATG	2 cut(s)	72, 612
BseLI	CCNNNNNNNGG	1 cut(s)	513
BseMI	GCAATG	1 cut(s)	918
BseMII	CTCAG	2 cut(s)	81, 1017
BseNI	ACTGG	1 cut(s)	687
BseXI	GCAGC	1 cut(s)	127
BsgI	GTGCAG	1 cut(s)	1077
BshFI	GGCC	2 cut(s)	302, 348
BshNI	GGYRCC	1 cut(s)	53
BsiHKCI	CYCGRG	1 cut(s)	870
BslI	CCNNNNNNNGG	1 cut(s)	513
BsmAI	GTCTC	3 cut(s)	70, 541, 972
BsnI	GGCC	2 cut(s)	302, 348
BsoBI	CYCGRG	1 cut(s)	870
Bsp1407I	TGTACA	1 cut(s)	1045
Bsp143I	GATC	9 cut(s)	246, 382, 760, 826, 859, 982, 1021, 1088, 1156
BspACI	CCGC	1 cut(s)	1001
BspANI	GGCC	2 cut(s)	302, 348
BspCNI	CTCAG	2 cut(s)	80, 1018
BspLI	GGNNCC	1 cut(s)	55
BspMI	ACCTGC	1 cut(s)	1058
BspPI	GGATC	4 cut(s)	821, 990, 1016, 1096
BspT107I	GGYRCC	1 cut(s)	53
BsrDI	GCAATG	1 cut(s)	918
BsrGI	TGTACA	1 cut(s)	1045
BsrI	ACTGG	1 cut(s)	687
BssMI	GATC	9 cut(s)	246, 382, 760, 826, 859, 982, 1021, 1088, 1156
BssNI	GRCGYC	1 cut(s)	930
Bst2UI	CCWGG	1 cut(s)	434
Bst4CI	ACNGT	3 cut(s)	253, 362, 665
Bst6I	CTCTTC	2 cut(s)	265, 774
BstACI	GRCGYC	1 cut(s)	930
BstAUI	TGTACA	1 cut(s)	1045
BstC8I	GCNNGC	6 cut(s)	39, 109, 193, 708, 850, 934
BstDEI	CTNAG	5 cut(s)	67, 350, 446, 801, 1026
BstF5I	GGATG	2 cut(s)	72, 612
BstKTI	GATC	9 cut(s)	249, 385, 763, 829, 862, 985, 1024, 1091, 1159
BstMAI	GTCTC	3 cut(s)	70, 541, 972
BstMBI	GATC	9 cut(s)	246, 382, 760, 826, 859, 982, 1021, 1088, 1156
BstMWI	GCNNNNNNNGC	1 cut(s)	146
BstNI	CCWGG	1 cut(s)	434
BstNSI	RCATGY	1 cut(s)	86
BstSCI	CCNGG	1 cut(s)	432
BstV1I	GCAGC	1 cut(s)	127
BstX2I	RGATCY	3 cut(s)	382, 982, 1088
BstYI	RGATCY	3 cut(s)	382, 982, 1088
BsuRI	GGCC	2 cut(s)	302, 348
BtsCI	GGATG	2 cut(s)	72, 612
BtsIMutI	CAGTG	2 cut(s)	249, 680
BveI	ACCTGC	1 cut(s)	1058
Cac8I	GCNNGC	6 cut(s)	39, 109, 193, 708, 850, 934
CseI	GACGC	1 cut(s)	938
Csp6I	GTAC	1 cut(s)	1046
CspCI	CAANNNNNGTGG	2 cut(s)	493, 528
CviAII	CATG	5 cut(s)	83, 304, 327, 453, 971
CviQI	GTAC	1 cut(s)	1046
DdeI	CTNAG	5 cut(s)	67, 350, 446, 801, 1026
DpnI	GATC	9 cut(s)	248, 384, 762, 828, 861, 984, 1023, 1090, 1158
DpnII	GATC	9 cut(s)	246, 382, 760, 826, 859, 982, 1021, 1088, 1156
DraI	TTTAAA	1 cut(s)	922
EaeI	YGGCCR	1 cut(s)	300
Eam1104I	CTCTTC	2 cut(s)	265, 774
EarI	CTCTTC	2 cut(s)	265, 774
EciI	GGCGGA	1 cut(s)	1016
Eco88I	CYCGRG	1 cut(s)	870
EcoRI	GAATTC	4 cut(s)	25, 331, 634, 1030
EcoRII	CCWGG	1 cut(s)	432
EcoT22I	ATGCAT	1 cut(s)	163
FaeI	CATG	5 cut(s)	86, 307, 330, 456, 974
FatI	CATG	5 cut(s)	82, 303, 326, 452, 970
FbaI	TGATCA	2 cut(s)	246, 760
Fnu4HI	GCNGC	1 cut(s)	141
FokI	GGATG	2 cut(s)	59, 619
Fsp4HI	GCNGC	1 cut(s)	141
FspBI	CTAG	5 cut(s)	144, 407, 438, 459, 902
GluI	GCNGC	1 cut(s)	141
HaeIII	GGCC	2 cut(s)	302, 348
HgaI	GACGC	1 cut(s)	938
Hin1I	GRCGYC	1 cut(s)	930
Hin1II	CATG	5 cut(s)	86, 307, 330, 456, 974
HinfI	GANTC	1 cut(s)	1008
HphI	GGTGA	3 cut(s)	140, 494, 622
Hpy166II	GTNNAC	2 cut(s)	209, 485
Hpy188I	TCNGA	2 cut(s)	392, 1156
Hpy188III	TCNNGA	3 cut(s)	870, 952, 1025
Hpy8I	GTNNAC	2 cut(s)	209, 485
HpyAV	CCTTC	1 cut(s)	1079
HpyCH4III	ACNGT	3 cut(s)	253, 362, 665
HpyCH4IV	ACGT	1 cut(s)	132
HpyF10VI	GCNNNNNNNGC	1 cut(s)	146
HpyF3I	CTNAG	5 cut(s)	67, 350, 446, 801, 1026
HpySE526I	ACGT	1 cut(s)	132
Hsp92I	GRCGYC	1 cut(s)	930
Hsp92II	CATG	5 cut(s)	86, 307, 330, 456, 974
Ksp22I	TGATCA	2 cut(s)	246, 760
Kzo9I	GATC	9 cut(s)	246, 382, 760, 826, 859, 982, 1021, 1088, 1156
LmnI	GCTCC	1 cut(s)	1003
Lsp1109I	GCAGC	1 cut(s)	127
LweI	GCATC	4 cut(s)	81, 148, 178, 271
MaeI	CTAG	5 cut(s)	144, 407, 438, 459, 902
MaeII	ACGT	1 cut(s)	132
MaeIII	GTNAC	1 cut(s)	128
MalI	GATC	9 cut(s)	248, 384, 762, 828, 861, 984, 1023, 1090, 1158
MboI	GATC	9 cut(s)	246, 382, 760, 826, 859, 982, 1021, 1088, 1156
MboII	GAAGA	5 cut(s)	282, 290, 791, 798, 1003
MfeI	CAATTG	3 cut(s)	262, 369, 855
MflI	RGATCY	3 cut(s)	382, 982, 1088
MlsI	TGGCCA	1 cut(s)	302
MluNI	TGGCCA	1 cut(s)	302
MmeI	TCCRAC	1 cut(s)	564
MnlI	CCTC	5 cut(s)	478, 696, 775, 880, 948
Mox20I	TGGCCA	1 cut(s)	302
Mph1103I	ATGCAT	1 cut(s)	163
MscI	TGGCCA	1 cut(s)	302
MseI	TTAA	4 cut(s)	78, 237, 579, 921
Msp20I	TGGCCA	1 cut(s)	302
MspA1I	CMGCKG	1 cut(s)	1149
MspR9I	CCNGG	1 cut(s)	434
MunI	CAATTG	3 cut(s)	262, 369, 855
MvaI	CCWGG	1 cut(s)	434
MwoI	GCNNNNNNNGC	1 cut(s)	146
NdeII	GATC	9 cut(s)	246, 382, 760, 826, 859, 982, 1021, 1088, 1156
NlaIII	CATG	5 cut(s)	86, 307, 330, 456, 974
NlaIV	GGNNCC	1 cut(s)	55
NmuCI	GTSAC	1 cut(s)	128
NsiI	ATGCAT	1 cut(s)	163
NspI	RCATGY	1 cut(s)	86
PaqCI	CACCTGC	1 cut(s)	1058
PfeI	GAWTC	1 cut(s)	1008
PkrI	GCNGC	1 cut(s)	142
Psp6I	CCWGG	1 cut(s)	432
PspGI	CCWGG	1 cut(s)	432
PspN4I	GGNNCC	1 cut(s)	55
PsuI	RGATCY	3 cut(s)	382, 982, 1088
PvuII	CAGCTG	1 cut(s)	1149
RsaI	GTAC	1 cut(s)	1047
RsaNI	GTAC	1 cut(s)	1046
SaqAI	TTAA	4 cut(s)	78, 237, 579, 921
SatI	GCNGC	1 cut(s)	141
Sau3AI	GATC	9 cut(s)	246, 382, 760, 826, 859, 982, 1021, 1088, 1156
ScrFI	CCNGG	1 cut(s)	434
SetI	ASST	9 cut(s)	135, 492, 597, 877, 1020, 1039, 1053, 1072, 1151
SfaNI	GCATC	4 cut(s)	81, 148, 178, 271
SmlI	CTYRAG	3 cut(s)	412, 884, 952
SmoI	CTYRAG	3 cut(s)	412, 884, 952
SsiI	CCGC	1 cut(s)	1001
SspMI	CTAG	5 cut(s)	144, 407, 438, 459, 902
StyD4I	CCNGG	1 cut(s)	432
TaaI	ACNGT	3 cut(s)	253, 362, 665
TaiI	ACGT	1 cut(s)	135
TaqI	TCGA	5 cut(s)	242, 335, 693, 777, 906
TatI	WGTACW	1 cut(s)	1045
TfiI	GAWTC	1 cut(s)	1008
Tru1I	TTAA	4 cut(s)	78, 237, 579, 921
Tru9I	TTAA	4 cut(s)	78, 237, 579, 921
TscAI	CASTG	2 cut(s)	256, 687
TseFI	GTSAC	1 cut(s)	128
TseI	GCWGC	1 cut(s)	140
Tsp45I	GTSAC	1 cut(s)	128
TspDTI	ATGAA	6 cut(s)	441, 543, 636, 711, 741, 821
TspRI	CASTG	2 cut(s)	256, 687
XapI	RAATTY	4 cut(s)	25, 331, 634, 1030
XceI	RCATGY	1 cut(s)	86
XspI	CTAG	5 cut(s)	144, 407, 438, 459, 902
Zsp2I	ATGCAT	1 cut(s)	163

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.