Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001922.1

Orthogroup ID

OG0015137

Physical Location & Seq

Genomic Coordinates Forward (+)

68065 .. 68730

Gene Structure 666 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0001922.1_g000011.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 666 bp

atggctcataaggatgactttacctggagcttgcttgtttcagggtttgcaaaagccggtaagctagagcttgctcgtgctttgtttgatgacatgcctaggagaaattggattgcttggaattctatgatcaatggctatgccaaaaatgggctctctagagatgctttgaggctttttaaggatttgagtttggacccattggaggtatcactatcacatgaaaagaaatttatattcgctacggttgttggagcttgtgctgatttggttgcccttggttgtggcaagcaaattcatgcgcgcattgtgactgatcaagtggaatttgactctgttttggctagttccttggttaatttttatggcaagtgcggtgatttggatagtgcaagtcaagttttgaagttgatcaaggagccagatgactactctctctcagcaatgatttcaggttttgcaaactgtggtataatgaacgatgcaagaagagtttttgatactaaaagcaatccagatgttgtgttatggaattcattgatatctggatatgtctttagtaacgaaaccattggaggagcattacttcttttcaaggaaatgctgactaatggtgttcgtgggaattcttttacgctgaatgaacgatgcaagaagagtttttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR Sec16

Protein Analysis

221

Amino Acids

24.39

Weight (kDa)

6.82

Isoelectric Point (pI)

19.42

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0015137)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G77010
fragaria_vesca	FvH4_5g29130
malus_domestica	MD08G1235400.v1.1
prunus_persica	Prupe.1G571500_v2.0.a1
rosa_chinensis	RchiOBHm_Chr7g0221791
rosa_laevigata	RLG00000002123
rosa_multiflora	Rmu_sc0001922.1_g000011 Rmu_sc0001922.1_g000012
rosa_roxburghii	Rroxscaffold_3G00237720
rosa_rugosa	Rorug07G0203300 Rorug07G0203400
rosa_samantha	Rh7AG344300 Rh7BG335100 Rh7CG361700 Rh7DG342100
rosa_wichuraiana	Rw7G029200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	304
AciI	CCGC	1 cut(s)	375
AcsI	RAATTY	6 cut(s)	121, 230, 294, 326, 532, 625
AfiI	CCNNNNNNNGG	2 cut(s)	150, 205
AgsI	TTSAA	2 cut(s)	406, 595
AjnI	CCWGG	1 cut(s)	23
AluBI	AGCT	4 cut(s)	30, 64, 70, 257
AluI	AGCT	4 cut(s)	30, 64, 70, 257
ApoI	RAATTY	6 cut(s)	121, 230, 294, 326, 532, 625
AspA2I	CCTAGG	1 cut(s)	98
AspLEI	GCGC	2 cut(s)	304, 306
AspS9I	GGNCC	1 cut(s)	196
AsuHPI	GGTGA	1 cut(s)	389
AvaII	GGWCC	1 cut(s)	196
AvrII	CCTAGG	1 cut(s)	98
BanII	GRGCYC	1 cut(s)	156
BauI	CACGAG	1 cut(s)	75
BciT130I	CCWGG	1 cut(s)	25
BclI	TGATCA	3 cut(s)	129, 316, 411
BfaI	CTAG	4 cut(s)	65, 99, 159, 345
BlnI	CCTAGG	1 cut(s)	98
Bme1390I	CCNGG	1 cut(s)	25
Bme18I	GGWCC	1 cut(s)	196
BmgT120I	GGNCC	1 cut(s)	196
BmiI	GGNNCC	2 cut(s)	198, 420
BmrFI	CCNGG	1 cut(s)	25
BmsI	GCATC	3 cut(s)	154, 472, 638
BpmI	CTGGAG	1 cut(s)	46
BsaJI	CCNNGG	3 cut(s)	98, 277, 351
Bsc4I	CCNNNNNNNGG	2 cut(s)	150, 205
Bse118I	RCCGGY	1 cut(s)	56
Bse3DI	GCAATG	1 cut(s)	450
BseBI	CCWGG	1 cut(s)	25
BseDI	CCNNGG	3 cut(s)	98, 277, 351
BseGI	GGATG	1 cut(s)	19
BseLI	CCNNNNNNNGG	2 cut(s)	150, 205
BseMI	GCAATG	1 cut(s)	450
BseMII	CTCAG	1 cut(s)	453
BsePI	GCGCGC	1 cut(s)	302
BseRI	GAGGAG	1 cut(s)	591
Bsh1236I	CGCG	1 cut(s)	304
BsiSI	CCGG	1 cut(s)	57
BslI	CCNNNNNNNGG	2 cut(s)	150, 205
Bsp1286I	GDGCHC	1 cut(s)	156
Bsp143I	GATC	3 cut(s)	129, 316, 411
BspACI	CCGC	1 cut(s)	375
BspCNI	CTCAG	1 cut(s)	452
BspFNI	CGCG	1 cut(s)	304
BspLI	GGNNCC	2 cut(s)	198, 420
BsrDI	GCAATG	1 cut(s)	450
BsrFI	RCCGGY	1 cut(s)	56
BssAI	RCCGGY	1 cut(s)	56
BssECI	CCNNGG	3 cut(s)	98, 277, 351
BssHII	GCGCGC	1 cut(s)	302
BssMI	GATC	3 cut(s)	129, 316, 411
BssSI	CACGAG	1 cut(s)	75
BssT1I	CCWWGG	3 cut(s)	98, 277, 351
Bst2BI	CACGAG	1 cut(s)	75
Bst2UI	CCWGG	1 cut(s)	25
Bst4CI	ACNGT	2 cut(s)	247, 467
Bst6I	CTCTTC	2 cut(s)	484, 650
BstC8I	GCNNGC	4 cut(s)	32, 72, 290, 304
BstDEI	CTNAG	1 cut(s)	439
BstF5I	GGATG	1 cut(s)	19
BstFNI	CGCG	1 cut(s)	304
BstHHI	GCGC	2 cut(s)	304, 306
BstKTI	GATC	3 cut(s)	132, 319, 414
BstMBI	GATC	3 cut(s)	129, 316, 411
BstNI	CCWGG	1 cut(s)	25
BstNSI	RCATGY	1 cut(s)	97
BstSCI	CCNGG	1 cut(s)	23
BstUI	CGCG	1 cut(s)	304
BtsCI	GGATG	1 cut(s)	19
Cac8I	GCNNGC	4 cut(s)	32, 72, 290, 304
CfoI	GCGC	2 cut(s)	304, 306
Cfr10I	RCCGGY	1 cut(s)	56
Cfr13I	GGNCC	1 cut(s)	196
CviAII	CATG	3 cut(s)	94, 221, 299
DdeI	CTNAG	1 cut(s)	439
DpnI	GATC	3 cut(s)	131, 318, 413
DpnII	GATC	3 cut(s)	129, 316, 411
Eam1104I	CTCTTC	2 cut(s)	484, 650
EarI	CTCTTC	2 cut(s)	484, 650
Eco130I	CCWWGG	3 cut(s)	98, 277, 351
Eco24I	GRGCYC	1 cut(s)	156
Eco32I	GATATC	1 cut(s)	543
Eco47I	GGWCC	1 cut(s)	196
EcoRI	GAATTC	3 cut(s)	121, 532, 625
EcoRII	CCWGG	1 cut(s)	23
EcoRV	GATATC	1 cut(s)	543
EcoT14I	CCWWGG	3 cut(s)	98, 277, 351
EcoT38I	GRGCYC	1 cut(s)	156
ErhI	CCWWGG	3 cut(s)	98, 277, 351
FaeI	CATG	3 cut(s)	97, 224, 302
FalI	AAGNNNNNCTT	1 cut(s)	34
FatI	CATG	3 cut(s)	93, 220, 298
FbaI	TGATCA	3 cut(s)	129, 316, 411
FokI	GGATG	1 cut(s)	26
FriOI	GRGCYC	1 cut(s)	156
FspBI	CTAG	4 cut(s)	65, 99, 159, 345
GlaI	GCGC	2 cut(s)	303, 305
GsuI	CTGGAG	1 cut(s)	46
HapII	CCGG	1 cut(s)	57
HhaI	GCGC	2 cut(s)	304, 306
Hin1II	CATG	3 cut(s)	97, 224, 302
Hin6I	GCGC	2 cut(s)	302, 304
HinP1I	GCGC	2 cut(s)	302, 304
HinfI	GANTC	1 cut(s)	332
HpaII	CCGG	1 cut(s)	57
HphI	GGTGA	1 cut(s)	389
Hpy188III	TCNNGA	3 cut(s)	159, 515, 546
HpyCH4III	ACNGT	2 cut(s)	247, 467
HpyCH4V	TGCA	5 cut(s)	50, 392, 461, 485, 651
HpyF3I	CTNAG	1 cut(s)	439
Hsp92II	CATG	3 cut(s)	97, 224, 302
HspAI	GCGC	2 cut(s)	302, 304
Ksp22I	TGATCA	3 cut(s)	129, 316, 411
Kzo9I	GATC	3 cut(s)	129, 316, 411
LmnI	GCTCC	4 cut(s)	27, 254, 418, 578
LpnPI	CCDG	8 cut(s)	10, 27, 37, 70, 435, 438, 528, 531
LweI	GCATC	3 cut(s)	154, 472, 638
MaeI	CTAG	4 cut(s)	65, 99, 159, 345
MaeIII	GTNAC	2 cut(s)	310, 560
MalI	GATC	3 cut(s)	131, 318, 413
MboI	GATC	3 cut(s)	129, 316, 411
MboII	GAAGA	1 cut(s)	501
MhlI	GDGCHC	1 cut(s)	156
MluCI	AATT	8 cut(s)	106, 121, 230, 294, 326, 358, 532, 625
MlyI	GAGTC	1 cut(s)	326
MmeI	TCCRAC	1 cut(s)	232
MnlI	CCTC	3 cut(s)	165, 199, 569
MseI	TTAA	2 cut(s)	180, 357
MslI	CAYNNNNRTG	1 cut(s)	12
MspI	CCGG	1 cut(s)	57
MspR9I	CCNGG	1 cut(s)	25
MvaI	CCWGG	1 cut(s)	25
MvnI	CGCG	1 cut(s)	304
NdeII	GATC	3 cut(s)	129, 316, 411
NlaIII	CATG	3 cut(s)	97, 224, 302
NlaIV	GGNNCC	2 cut(s)	198, 420
NmuCI	GTSAC	1 cut(s)	310
NspI	RCATGY	1 cut(s)	97
PauI	GCGCGC	1 cut(s)	302
PleI	GAGTC	1 cut(s)	326
PpsI	GAGTC	1 cut(s)	326
Psp6I	CCWGG	1 cut(s)	23
PspGI	CCWGG	1 cut(s)	23
PspN4I	GGNNCC	2 cut(s)	198, 420
PspPI	GGNCC	1 cut(s)	196
PteI	GCGCGC	1 cut(s)	302
RseI	CAYNNNNRTG	1 cut(s)	12
SaqAI	TTAA	2 cut(s)	180, 357
Sau3AI	GATC	3 cut(s)	129, 316, 411
Sau96I	GGNCC	1 cut(s)	196
SchI	GAGTC	1 cut(s)	326
ScrFI	CCNGG	1 cut(s)	25
SduI	GDGCHC	1 cut(s)	156
SetI	ASST	7 cut(s)	26, 32, 66, 72, 210, 259, 457
SfaNI	GCATC	3 cut(s)	154, 472, 638
SinI	GGWCC	1 cut(s)	196
SmiMI	CAYNNNNRTG	1 cut(s)	12
Sse9I	AATT	8 cut(s)	106, 121, 230, 294, 326, 358, 532, 625
SsiI	CCGC	1 cut(s)	375
SspMI	CTAG	4 cut(s)	65, 99, 159, 345
StyD4I	CCNGG	1 cut(s)	23
StyI	CCWWGG	3 cut(s)	98, 277, 351
TaaI	ACNGT	2 cut(s)	247, 467
TasI	AATT	8 cut(s)	106, 121, 230, 294, 326, 358, 532, 625
Tru1I	TTAA	2 cut(s)	180, 357
Tru9I	TTAA	2 cut(s)	180, 357
TseFI	GTSAC	1 cut(s)	310
Tsp45I	GTSAC	1 cut(s)	310
TspDTI	ATGAA	5 cut(s)	237, 287, 491, 525, 657
VpaK11BI	GGWCC	1 cut(s)	196
XapI	RAATTY	6 cut(s)	121, 230, 294, 326, 532, 625
XbaI	TCTAGA	1 cut(s)	158
XceI	RCATGY	1 cut(s)	97
XmaJI	CCTAGG	1 cut(s)	98
XspI	CTAG	4 cut(s)	65, 99, 159, 345

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.