Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr08

Orthogroup ID

OG0010572

Physical Location & Seq

Genomic Coordinates Reverse (-)

30739006 .. 30744292

Gene Structure 5287 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD08G1241900.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 3000 bp

ATGATGGTCTTCCCTTTCATTGTCTTGACATTTTTCTCTTTTGTTGGCACATCTTGTTTTGCTTCTTCCTTGGTCAGTGATTTTCATGTTTTAGTCACTCTCAAGCAAGGCTTCCAATTCCCCGAACTGGCCTTAAGCACTTGGAATTCTTCGTCTCCACGGTCAGTTTGTTCGTGGGCCGGAATTCGGTGCTATAGAGGAAGAGTTGTTGCAGTGGACTTGACAGATTTCAGTCTATCCGGCTCTGTGTCTCCACTGAATTCAGGCCTCGACCGCCTCACCTACCTTTCTCTTGCAGGAAACAACTTCACAGGCAGCATTGCAATTGCCAATCTCACAAGCCTTCAGTTCCTCAACATATCCAACAACCAATTCAGTGGAGGACTGGATTGGGACTACTCGGGCATTGCCAATTTGGAAGTTTTTGATGCTTACAACAACAACTTCAGTGCTTCTCTTCCACTTGGTATTTTGAGCTTGAACAAGCTCAGGTTTTTGGAGCTTGGAGGCAATTATTTCAGTGGGAAAATCCCAAAATCTTATGGGAATTTAGTCAGCTTGGAGTACTTGTCACTTGCCGGCAATGATCTCAGTGGCGAAATTCCGGGCGAGTTGGGCAACCTCACTAACTTGAGAAAGCTTTACTTGGGATATTACAATGTTTTTGAAGGTGGGATTCCAAAGGAGTTTGGAAAATTGGTCAATGTGGTTCACATGGATCTCTCGAGCTGCGAATTGGATGGGCCAATTCCCCGCGAGCTGGGGAATTTGAAGGAGCTCAACACACTTTACTTGCACATCAATCTTCTCTCAGGCACAATCCCAAGGCAGCTAGGCAACTTAACAAACTTGGTCAATCTTGATCTCTCCAACAATGCACTTACTGGTGAAATCCCATTTGAGTTTTCCAATCTCAAACAGCTCAAGCTTTTCAACCTCTTCATGAACAGATTGCATGGCTCGATTCCAGACTACGTCGCGGACTTGCCTAATTTGGAAACTCTGGGGCTGTGGATGAACAACTTCACCGGGATCATCCCGCAGAAACTTGGCCAGAATGGGAAGCTTCAGTTGCTCGATTTGTCCTCGAACAAGCTCACTGGTAAAATCCCACCAAACTTGTGTTCATCCAATCAGCTGAGAATACTAATTCTCTTGAAAAACTTTCTTTTCGGTCCAATCCCTCAAGGCTTGGGGACATGTTTTAGTCTCACTAGAGTGAGGCTGGGGCAGAATTACCTGAATGGTAGCATACCAAATGGCCTAATTTATTTGCCTCTGCTGAGTTTAGCAGAGTTGCAAAACAATTACCTATCTGGCATGCTGTTGGAGAATGCTAATAGCTCGTCGCAGCCAGTGAAATTAGGCCAGCTTAATCTGTCGAACAATCTCCTATCCGGTCCTTTACCTTCCTCGCTTTCAAATTTCTCTTCCCTCCAAATCCTCCTACTCAGTGGAAATCAATTCTCCGGTCCAATCCCACCTTCAATAGGCCAACTCCATCAAGTACTAAAGCTTGATCTTAGCAGAAATTCACTCTCTGGCGAAATCCCACCGGAAATCGGAAACTGTTTTCATCTCACTTACCTTGACATGAGCCAGAACAACCTCTCCGGCTCCATCCCACCCGAAATTTCCAGGGTTCACATACTGAATTACTTGAACATATCGAGAAACCACTTGAACCAAAATATTCCCAAATCAATAGGAACCATGAAGAGCCTCACAATTGCTGATTTTTCCTTCAATGATTTCTCCGGAAAACTACCCGAATCAGGGCAATTTTCCTTCTTTAATGCCTCTGCTTTCGCGGGCAATCCCCATCTCTGTGGCTCCCTCCTGAACAACCCTTGCAACTTCACCACAATCACAAGCACACCGCGAAAACCTCCGGGGGATTTCAAGCTAATCTTCGCATTAGGCCTGCTAATATGTTCGTTGGTGTTTGCTGCGGCTGCTATCCTCAAGGCCAAATCATTCAAAAGGAACGGTACCGATTCATGGAAAATGACTGCATTCCAGAGGCTGGAATTCACAATTGCTGACATCCTCGAATGCGTCAAAGACGGTAATGTGATTGGAAGAGGGGGAGCAGGGATTGTTTACCACGGAAAAATGCCGAATGGGGTTGAAATTGCTGTGAAAAAGCTACTTGGTTTTGGACCGAACAGCCACGATCATGGCTTCAGAGCCGAAATCCAGACGTTAGGCAACATTCGACATAGAAACATTGTGAGACTGCTGGCATTTTGTTCAAACAAGGAGACCAATCTGCTTGTTTACGAGTACATGAGAAACGGAAGCTTGGGAGAAGCACTGCATGGGAAGAAGGGAGGTTTCTTGGGGTGGAATTTGAGGTACAAAATTGCCATCGAAGCTGCCAAAGGCTTGTGCTACCTTCACCATGATTGTTCTCCATGGATTCTTCACCGGGACGTGAAATCCAACAACATTTTGCTCAATTCGAGCTTCGAAGCGCACGTTGCAGATTTCGGGCTCGCCAAGTTCTTGATGGATGGGGGAACGTCTGAATGCATGTCTGCAATTGCAGGCTCATACGGCTACATTGCACCAGAGTATGCATACACGCTGAGGGTGGATGAGAAAAGCGATGTATATAGCTTCGGGGTGGTTCTATTAGAGCTTCTGACGGGGCGGCGGCCGGTAGGCGAGTTTGGAGAAGGCGTTGACATAGTGCAATGGTCGAAGAAAGCAACTAATTGTCGGAAAGAGGAAGTTGCAAATATTGTTGATCATAGGCTTACTATATCTGTTCCCAAAGATGAAGCAATGCACATGTTCTTCATTGCAATGCTTTGCATCCAAGAAAACAGTGTTGAGAGGCCGACGATGAGAGAAGTCGTTCAAATGCTATCGGAGTTTCCTGTTCACTCTCCAGAATCCTTTCGGTCCTCTTCGTCTTTAGCCAATTCCCAGAAATCGAAGAACGTCGAAAAAGACGGAAAATGTCCCAAGTTCAAACAGGATATTTTGGTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0005102 GO:0005488 GO:0005515 GO:0005575 GO:0005623 GO:0005886 GO:0007275 GO:0008150 GO:0009791 GO:0009888 GO:0009908 GO:0010073 GO:0010075 GO:0016020 GO:0022414 GO:0032501 GO:0032502 GO:0033612 GO:0040008 GO:0044464 GO:0048229 GO:0048367 GO:0048437 GO:0048507 GO:0048509 GO:0048608 GO:0048638 GO:0048731 GO:0048856 GO:0050789 GO:0050793 GO:0061458 GO:0065007 GO:0071944 GO:0090567 GO:0099402

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LRRNT_2 LRR_1 LRR_6 LRR_8 Pkinase Pkinase_Tyr

Protein Analysis

1000

Amino Acids

109.74

Weight (kDa)

8.27

Isoelectric Point (pI)

29.94

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
LRRNT_2	PF08263	26 - 64	1.2e-06	Leucine rich repeat N-terminal domain
LRR_14	PF23598	108 - 218	1.9e-09	Leucine-rich repeat region
LRR_14	PF23598	239 - 338	7.7e-06	Leucine-rich repeat region
PK_Tyr_Ser-Thr	PF07714	690 - 958	3.5e-44	Protein tyrosine and serine/threonine kinase
Pkinase	PF00069	690 - 956	1.5e-41	Protein kinase domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010572)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g28640
malus_domestica	MD08G1241900.v1.1 MD15G1435600.v1.1
prunus_persica	Prupe.1G579200_v2.0.a1 Prupe.1G579200_v2.0.a1 Prupe.1G579200_v2.0.a1 Prupe.1G579200_v2.0.a1 Prupe.1G579200_v2.0.a1 Prupe.1G579200_v2.0.a1
pyrus_communis	pycom08g20980 pycom15g38430
rosa_chinensis	RchiOBHm_Chr7g0220681
rosa_laevigata	RLG00000002210
rosa_multiflora	Rmu_ssc0000189.1_g000002
rosa_roxburghii	Rroxscaffold_3G00239220
rosa_rugosa	Rorug07G0196100
rosa_samantha	Rh7AG336900 Rh7BG327800 Rh7CG354900 Rh7DG333500
rosa_wichuraiana	Rw7G028740

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	1991
AccB1I	GGYRCC	1 cut(s)	1991
AccB7I	CCANNNNNTGG	1 cut(s)	2026
AccII	CGCG	4 cut(s)	756, 980, 1811, 1882
AccIII	TCCGGA	1 cut(s)	1757
AciI	CCGC	9 cut(s)	274, 754, 980, 1040, 1811, 1880, 1952, 2656, 2659
AclWI	GGATC	2 cut(s)	726, 1040
AcoI	YGGCCR	2 cut(s)	1051, 2660
AcuI	CTGAAG	4 cut(s)	329, 430, 1052, 2170
AfaI	GTAC	5 cut(s)	566, 1509, 1993, 2288, 2360
AfiI	CCNNNNNNNGG	9 cut(s)	127, 186, 760, 1490, 1562, 1775, 1776, 2001, 2026
AflII	CTTAAG	1 cut(s)	133
AflIII	ACRYGT	2 cut(s)	1199, 2796
AjiI	CACGTC	1 cut(s)	2437
AjnI	CCWGG	1 cut(s)	1637
AjuI	GAANNNNNNNTTGG	6 cut(s)	356, 388, 1108, 1140, 1468, 1500
AleI	CACNNNNGTG	1 cut(s)	1217
AloI	GAACNNNNNNTCC	2 cut(s)	1595, 1627
Alw21I	GWGCWC	1 cut(s)	780
Alw26I	GTCTC	5 cut(s)	159, 255, 1214, 2230, 2258
AlwI	GGATC	2 cut(s)	726, 1040
AlwNI	CAGNNNCTG	1 cut(s)	2026
Ama87I	CYCGRG	2 cut(s)	400, 724
Aor13HI	TCCGGA	1 cut(s)	1757
ApeKI	GCWGC	7 cut(s)	315, 729, 829, 1351, 1949, 1955, 2378
Asp700I	GAANNNNTTC	3 cut(s)	1022, 2862, 2904
Asp718I	GGTACC	1 cut(s)	1991
AspLEI	GCGC	1 cut(s)	2479
AspS9I	GGNCC	7 cut(s)	177, 743, 1175, 1400, 1472, 2162, 2910
AsuC2I	CCSGG	4 cut(s)	606, 1030, 1893, 2432
AsuHPI	GGTGA	6 cut(s)	271, 899, 1018, 1852, 2393, 2420
AsuII	TTCGAA	1 cut(s)	2472
AvaI	CYCGRG	2 cut(s)	400, 724
AvaII	GGWCC	5 cut(s)	1175, 1400, 1472, 2162, 2910
BalI	TGGCCA	1 cut(s)	1053
BanI	GGYRCC	1 cut(s)	1991
BanII	GRGCYC	2 cut(s)	780, 2499
Bbv12I	GWGCWC	1 cut(s)	780
BbvCI	CCTCAGC	1 cut(s)	2591
BbvI	GCAGC	7 cut(s)	327, 716, 841, 1363, 1936, 1942, 2365
BccI	CCATC	7 cut(s)	734, 1509, 1628, 1830, 2378, 2506, 2510
BceAI	ACGGC	1 cut(s)	2575
BciT130I	CCWGG	1 cut(s)	1639
BclI	TGATCA	1 cut(s)	2752
BcnI	CCSGG	4 cut(s)	606, 1030, 1893, 2432
BcoDI	GTCTC	5 cut(s)	159, 255, 1214, 2230, 2258
BfaI	CTAG	2 cut(s)	833, 1215
BfmI	CTRYAG	1 cut(s)	193
BfrI	CTTAAG	1 cut(s)	133
BmcAI	AGTACT	2 cut(s)	566, 1509
Bme1390I	CCNGG	5 cut(s)	606, 1030, 1639, 1893, 2432
Bme18I	GGWCC	5 cut(s)	1175, 1400, 1472, 2162, 2910
BmeT110I	CYCGRG	2 cut(s)	400, 724
BmgBI	CACGTC	1 cut(s)	2437
BmgT120I	GGNCC	7 cut(s)	177, 743, 1175, 1400, 1472, 2162, 2910
BmiI	GGNNCC	4 cut(s)	1618, 1711, 1834, 1993
BmrFI	CCNGG	5 cut(s)	606, 1030, 1639, 1893, 2432
BmsI	GCATC	2 cut(s)	418, 2829
BpmI	CTGGAG	1 cut(s)	2880
Bpu10I	CCTNAGC	2 cut(s)	488, 2591
Bpu14I	TTCGAA	1 cut(s)	2472
BpuEI	CTTGAG	5 cut(s)	86, 652, 908, 1170, 1949
BpuMI	CCSGG	4 cut(s)	606, 1030, 1893, 2432
BsaI	GGTCTC	1 cut(s)	2258
BsaJI	CCNNGG	7 cut(s)	69, 158, 824, 1638, 1892, 2107, 2417
BsaWI	WCCGGW	4 cut(s)	1397, 1469, 1555, 1757
BsaXI	ACNNNNNCTCC	6 cut(s)	554, 584, 1595, 1625, 2670, 2700
Bsc4I	CCNNNNNNNGG	9 cut(s)	127, 186, 760, 1490, 1562, 1775, 1776, 2001, 2026
Bse118I	RCCGGY	2 cut(s)	578, 2662
Bse1I	ACTGG	5 cut(s)	132, 390, 889, 1105, 1355
Bse3DI	GCAATG	8 cut(s)	318, 405, 589, 2565, 2705, 2796, 2805, 2817
BseAI	TCCGGA	1 cut(s)	1757
BseBI	CCWGG	1 cut(s)	1639
BseDI	CCNNGG	7 cut(s)	69, 158, 824, 1638, 1892, 2107, 2417
BseGI	GGATG	9 cut(s)	745, 1020, 1035, 1127, 1620, 2046, 2521, 2605, 2820
BseLI	CCNNNNNNNGG	9 cut(s)	127, 186, 760, 1490, 1562, 1775, 1776, 2001, 2026
BseMI	GCAATG	8 cut(s)	318, 405, 589, 2565, 2705, 2796, 2805, 2817
BseMII	CTCAG	7 cut(s)	502, 604, 825, 1130, 1274, 1465, 2582
BseNI	ACTGG	5 cut(s)	132, 390, 889, 1105, 1355
BseX3I	CGGCCG	1 cut(s)	2660
BseXI	GCAGC	7 cut(s)	327, 716, 841, 1363, 1936, 1942, 2365
BseYI	CCCAGC	2 cut(s)	760, 1225
Bsh1236I	CGCG	4 cut(s)	756, 980, 1811, 1882
Bsh1285I	CGRYCG	2 cut(s)	274, 2663
BshNI	GGYRCC	1 cut(s)	1991
BsiEI	CGRYCG	2 cut(s)	274, 2663
BsiHKAI	GWGCWC	1 cut(s)	780
BsiHKCI	CYCGRG	2 cut(s)	400, 724
BslFI	GGGAC	4 cut(s)	407, 1210, 2447, 2955
BslI	CCNNNNNNNGG	9 cut(s)	127, 186, 760, 1490, 1562, 1775, 1776, 2001, 2026
BsmAI	GTCTC	5 cut(s)	159, 255, 1214, 2230, 2258
BsmBI	CGTCTC	1 cut(s)	159
BsmFI	GGGAC	4 cut(s)	407, 1210, 2447, 2955
BsmI	GAATGC	4 cut(s)	1339, 2015, 2060, 2537
Bso31I	GGTCTC	1 cut(s)	2258
BsoBI	CYCGRG	2 cut(s)	400, 724
Bsp119I	TTCGAA	1 cut(s)	2472
Bsp1286I	GDGCHC	2 cut(s)	780, 2499
Bsp13I	TCCGGA	1 cut(s)	1757
Bsp143I	GATC	7 cut(s)	586, 718, 862, 1032, 1519, 2176, 2752
Bsp19I	CCATGG	1 cut(s)	2417
BspACI	CCGC	9 cut(s)	274, 754, 980, 1040, 1811, 1880, 1952, 2656, 2659
BspCNI	CTCAG	7 cut(s)	501, 603, 824, 1131, 1275, 1464, 2583
BspEI	TCCGGA	1 cut(s)	1757
BspFNI	CGCG	4 cut(s)	756, 980, 1811, 1882
BspHI	TCATGA	1 cut(s)	942
BspLI	GGNNCC	4 cut(s)	1618, 1711, 1834, 1993
BspPI	GGATC	2 cut(s)	726, 1040
BspQI	GCTCTTC	1 cut(s)	1712
BspT104I	TTCGAA	1 cut(s)	2472
BspT107I	GGYRCC	1 cut(s)	1991
BspTI	CTTAAG	1 cut(s)	133
BspTNI	GGTCTC	1 cut(s)	2258
BsrDI	GCAATG	8 cut(s)	318, 405, 589, 2565, 2705, 2796, 2805, 2817
BsrFI	RCCGGY	2 cut(s)	578, 2662
BsrI	ACTGG	5 cut(s)	132, 390, 889, 1105, 1355
BssAI	RCCGGY	2 cut(s)	578, 2662
BssECI	CCNNGG	7 cut(s)	69, 158, 824, 1638, 1892, 2107, 2417
BssMI	GATC	7 cut(s)	586, 718, 862, 1032, 1519, 2176, 2752
BssT1I	CCWWGG	3 cut(s)	69, 824, 2417
Bst2UI	CCWGG	1 cut(s)	1639
Bst4CI	ACNGT	5 cut(s)	162, 1571, 1991, 2069, 2834
Bst6I	CTCTTC	7 cut(s)	196, 462, 944, 1435, 1712, 2077, 2920
BstAFI	CTTAAG	1 cut(s)	133
BstBI	TTCGAA	1 cut(s)	2472
BstC8I	GCNNGC	9 cut(s)	580, 758, 1322, 1370, 1813, 1925, 2244, 2499, 2551
BstDEI	CTNAG	8 cut(s)	488, 590, 811, 1139, 1283, 1451, 1523, 2591
BstDSI	CCRYGG	3 cut(s)	158, 2107, 2417
BstENI	CCTNNNNNAGG	1 cut(s)	1488
BstF5I	GGATG	9 cut(s)	745, 1020, 1035, 1127, 1620, 2046, 2521, 2605, 2820
BstFNI	CGCG	4 cut(s)	756, 980, 1811, 1882
BstHHI	GCGC	1 cut(s)	2479
BstKTI	GATC	7 cut(s)	589, 721, 865, 1035, 1522, 2179, 2755
BstMAI	GTCTC	5 cut(s)	159, 255, 1214, 2230, 2258
BstMBI	GATC	7 cut(s)	586, 718, 862, 1032, 1519, 2176, 2752
BstMCI	CGRYCG	2 cut(s)	274, 2663
BstMWI	GCNNNNNNNGC	7 cut(s)	273, 615, 1072, 1955, 2375, 2483, 2559
BstNI	CCWGG	1 cut(s)	1639
BstNSI	RCATGY	4 cut(s)	1203, 1324, 2539, 2800
BstSCI	CCNGG	5 cut(s)	604, 1028, 1637, 1891, 2430
BstSFI	CTRYAG	1 cut(s)	193
BstUI	CGCG	4 cut(s)	756, 980, 1811, 1882
BstV1I	GCAGC	7 cut(s)	327, 716, 841, 1363, 1936, 1942, 2365
BstX2I	RGATCY	1 cut(s)	718
BstXI	CCANNNNNNTGG	3 cut(s)	377, 1829, 2180
BstYI	RGATCY	1 cut(s)	718
BstZI	CGGCCG	1 cut(s)	2660
BtgI	CCRYGG	3 cut(s)	158, 2107, 2417
BtgZI	GCGATG	1 cut(s)	2625
BtrI	CACGTC	1 cut(s)	2437
BtsCI	GGATG	9 cut(s)	745, 1020, 1035, 1127, 1620, 2046, 2521, 2605, 2820
BtsI	GCAGTG	2 cut(s)	219, 2315
Cac8I	GCNNGC	9 cut(s)	580, 758, 1322, 1370, 1813, 1925, 2244, 2499, 2551
CaiI	CAGNNNCTG	1 cut(s)	2026
CciI	TCATGA	1 cut(s)	942
CfoI	GCGC	1 cut(s)	2479
Cfr10I	RCCGGY	2 cut(s)	578, 2662
Cfr13I	GGNCC	7 cut(s)	177, 743, 1175, 1400, 1472, 2162, 2910
CseI	GACGC	1 cut(s)	2047
Csp6I	GTAC	5 cut(s)	565, 1508, 1992, 2287, 2359
CspCI	CAANNNNNGTGG	2 cut(s)	1101, 1136
CviQI	GTAC	5 cut(s)	565, 1508, 1992, 2287, 2359
DdeI	CTNAG	8 cut(s)	488, 590, 811, 1139, 1283, 1451, 1523, 2591
DpnI	GATC	7 cut(s)	588, 720, 864, 1034, 1521, 2178, 2754
DpnII	GATC	7 cut(s)	586, 718, 862, 1032, 1519, 2176, 2752
EaeI	YGGCCR	2 cut(s)	1051, 2660
EagI	CGGCCG	1 cut(s)	2660
Eam1104I	CTCTTC	7 cut(s)	196, 462, 944, 1435, 1712, 2077, 2920
EarI	CTCTTC	7 cut(s)	196, 462, 944, 1435, 1712, 2077, 2920
Ecl136II	GAGCTC	1 cut(s)	778
EclXI	CGGCCG	1 cut(s)	2660
Eco130I	CCWWGG	3 cut(s)	69, 824, 2417
Eco147I	AGGCCT	2 cut(s)	267, 1923
Eco24I	GRGCYC	2 cut(s)	780, 2499
Eco31I	GGTCTC	1 cut(s)	2258
Eco47I	GGWCC	5 cut(s)	1175, 1400, 1472, 2162, 2910
Eco52I	CGGCCG	1 cut(s)	2660
Eco53kI	GAGCTC	1 cut(s)	778
Eco57I	CTGAAG	4 cut(s)	329, 430, 1052, 2170
Eco88I	CYCGRG	2 cut(s)	400, 724
EcoICRI	GAGCTC	1 cut(s)	778
EcoNI	CCTNNNNNAGG	1 cut(s)	1488
EcoRI	GAATTC	4 cut(s)	145, 183, 259, 2030
EcoRII	CCWGG	1 cut(s)	1637
EcoT14I	CCWWGG	3 cut(s)	69, 824, 2417
EcoT22I	ATGCAT	2 cut(s)	2537, 2584
EcoT38I	GRGCYC	2 cut(s)	780, 2499
ErhI	CCWWGG	3 cut(s)	69, 824, 2417
Esp3I	CGTCTC	1 cut(s)	159
FalI	AAGNNNNNCTT	6 cut(s)	95, 127, 629, 661, 1895, 1927
FaqI	GGGAC	4 cut(s)	407, 1210, 2447, 2955
FauI	CCCGC	3 cut(s)	761, 1047, 1804
FbaI	TGATCA	1 cut(s)	2752
FokI	GGATG	9 cut(s)	752, 1022, 1027, 1114, 1607, 2033, 2528, 2612, 2807
FriOI	GRGCYC	2 cut(s)	780, 2499
FspBI	CTAG	2 cut(s)	833, 1215
GlaI	GCGC	1 cut(s)	2478
GsaI	CCCAGC	2 cut(s)	764, 1229
GsuI	CTGGAG	1 cut(s)	2880
HgaI	GACGC	1 cut(s)	2047
HhaI	GCGC	1 cut(s)	2479
Hin6I	GCGC	1 cut(s)	2477
HinP1I	GCGC	1 cut(s)	2477
HincII	GTYRAC	1 cut(s)	2689
HindII	GTYRAC	1 cut(s)	2689
HindIII	AAGCTT	5 cut(s)	638, 926, 1064, 1514, 2302
HinfI	GANTC	6 cut(s)	676, 964, 1772, 1997, 2422, 2900
HphI	GGTGA	6 cut(s)	271, 899, 1018, 1852, 2393, 2420
Hpy166II	GTNNAC	7 cut(s)	217, 712, 1645, 2104, 2281, 2689, 2890
Hpy188I	TCNGA	6 cut(s)	1565, 2189, 2530, 2649, 2727, 2878
Hpy8I	GTNNAC	7 cut(s)	217, 712, 1645, 2104, 2281, 2689, 2890
Hpy99I	CGWCG	4 cut(s)	980, 1351, 2851, 2954
HpyCH4III	ACNGT	5 cut(s)	162, 1571, 1991, 2069, 2834
HpyCH4IV	ACGT	6 cut(s)	975, 2204, 2436, 2481, 2525, 2949
HpyF10VI	GCNNNNNNNGC	7 cut(s)	273, 615, 1072, 1955, 2375, 2483, 2559
HpyF3I	CTNAG	8 cut(s)	488, 590, 811, 1139, 1283, 1451, 1523, 2591
HpySE526I	ACGT	6 cut(s)	975, 2204, 2436, 2481, 2525, 2949
HspAI	GCGC	1 cut(s)	2477
Kpn2I	TCCGGA	1 cut(s)	1757
KpnI	GGTACC	1 cut(s)	1995
KroI	GCCGGC	1 cut(s)	578
KroNI	GCCGGC	1 cut(s)	580
Ksp22I	TGATCA	1 cut(s)	2752
Kzo9I	GATC	7 cut(s)	586, 718, 862, 1032, 1519, 2176, 2752
LguI	GCTCTTC	1 cut(s)	1712
LmnI	GCTCC	5 cut(s)	499, 775, 1622, 1838, 2090
Lsp1109I	GCAGC	7 cut(s)	327, 716, 841, 1363, 1936, 1942, 2365
LweI	GCATC	2 cut(s)	418, 2829
MaeI	CTAG	2 cut(s)	833, 1215
MaeII	ACGT	6 cut(s)	975, 2204, 2436, 2481, 2525, 2949
MaeIII	GTNAC	2 cut(s)	94, 570
MalI	GATC	7 cut(s)	588, 720, 864, 1034, 1521, 2178, 2754
MboI	GATC	7 cut(s)	586, 718, 862, 1032, 1519, 2176, 2752
MfeI	CAATTG	4 cut(s)	324, 1728, 2037, 2544
MflI	RGATCY	1 cut(s)	718
MhlI	GDGCHC	2 cut(s)	780, 2499
MlsI	TGGCCA	1 cut(s)	1053
MluNI	TGGCCA	1 cut(s)	1053
MmeI	TCCRAC	5 cut(s)	387, 894, 1308, 2469, 2705
Mox20I	TGGCCA	1 cut(s)	1053
Mph1103I	ATGCAT	2 cut(s)	2537, 2584
MroI	TCCGGA	1 cut(s)	1757
MroNI	GCCGGC	1 cut(s)	578
MroXI	GAANNNNTTC	3 cut(s)	1022, 2862, 2904
MscI	TGGCCA	1 cut(s)	1053
MseI	TTAA	5 cut(s)	134, 842, 1374, 1794, 2998
MslI	CAYNNNNRTG	4 cut(s)	1217, 1827, 2178, 2810
Msp20I	TGGCCA	1 cut(s)	1053
MspA1I	CMGCKG	1 cut(s)	1138
MspCI	CTTAAG	1 cut(s)	133
MspR9I	CCNGG	5 cut(s)	606, 1030, 1639, 1893, 2432
MunI	CAATTG	4 cut(s)	324, 1728, 2037, 2544
Mva1269I	GAATGC	4 cut(s)	1339, 2015, 2060, 2537
MvaI	CCWGG	1 cut(s)	1639
MvnI	CGCG	4 cut(s)	756, 980, 1811, 1882
MwoI	GCNNNNNNNGC	7 cut(s)	273, 615, 1072, 1955, 2375, 2483, 2559
NaeI	GCCGGC	1 cut(s)	580
NciI	CCSGG	4 cut(s)	606, 1030, 1893, 2432
NcoI	CCATGG	1 cut(s)	2417
NdeII	GATC	7 cut(s)	586, 718, 862, 1032, 1519, 2176, 2752
NgoMIV	GCCGGC	1 cut(s)	578
NlaIV	GGNNCC	4 cut(s)	1618, 1711, 1834, 1993
NmuCI	GTSAC	2 cut(s)	94, 570
NsiI	ATGCAT	2 cut(s)	2537, 2584
NspI	RCATGY	4 cut(s)	1203, 1324, 2539, 2800
NspV	TTCGAA	1 cut(s)	2472
OliI	CACNNNNGTG	1 cut(s)	1217
PaeI	GCATGC	1 cut(s)	1324
PaeR7I	CTCGAG	1 cut(s)	724
PagI	TCATGA	1 cut(s)	942
PceI	AGGCCT	2 cut(s)	267, 1923
PciI	ACATGT	2 cut(s)	1199, 2796
PciSI	GCTCTTC	1 cut(s)	1712
PcsI	WCGNNNNNNNCGW	1 cut(s)	2478
PctI	GAATGC	4 cut(s)	1339, 2015, 2060, 2537
PdiI	GCCGGC	1 cut(s)	580
PdmI	GAANNNNTTC	3 cut(s)	1022, 2862, 2904
PfeI	GAWTC	6 cut(s)	676, 964, 1772, 1997, 2422, 2900
PflFI	GACNNNGTC	1 cut(s)	974
PflMI	CCANNNNNTGG	1 cut(s)	2026
PscI	ACATGT	2 cut(s)	1199, 2796
Psp124BI	GAGCTC	1 cut(s)	780
Psp6I	CCWGG	1 cut(s)	1637
PspFI	CCCAGC	2 cut(s)	760, 1225
PspGI	CCWGG	1 cut(s)	1637
PspN4I	GGNNCC	4 cut(s)	1618, 1711, 1834, 1993
PspPI	GGNCC	7 cut(s)	177, 743, 1175, 1400, 1472, 2162, 2910
PstNI	CAGNNNCTG	1 cut(s)	2026
PsuI	RGATCY	1 cut(s)	718
PsyI	GACNNNGTC	1 cut(s)	974
PvuII	CAGCTG	1 cut(s)	1138
RsaI	GTAC	5 cut(s)	566, 1509, 1993, 2288, 2360
RsaNI	GTAC	5 cut(s)	565, 1508, 1992, 2287, 2359
RseI	CAYNNNNRTG	4 cut(s)	1217, 1827, 2178, 2810
SacI	GAGCTC	1 cut(s)	780
SapI	GCTCTTC	1 cut(s)	1712
SaqAI	TTAA	5 cut(s)	134, 842, 1374, 1794, 2998
Sau3AI	GATC	7 cut(s)	586, 718, 862, 1032, 1519, 2176, 2752
Sau96I	GGNCC	7 cut(s)	177, 743, 1175, 1400, 1472, 2162, 2910
ScaI	AGTACT	2 cut(s)	566, 1509
ScrFI	CCNGG	5 cut(s)	606, 1030, 1639, 1893, 2432
SduI	GDGCHC	2 cut(s)	780, 2499
SfaNI	GCATC	2 cut(s)	418, 2829
SfcI	CTRYAG	1 cut(s)	193
Sfr274I	CTCGAG	1 cut(s)	724
SfuI	TTCGAA	1 cut(s)	2472
SinI	GGWCC	5 cut(s)	1175, 1400, 1472, 2162, 2910
SlaI	CTCGAG	1 cut(s)	724
SmiMI	CAYNNNNRTG	4 cut(s)	1217, 1827, 2178, 2810
SmlI	CTYRAG	7 cut(s)	101, 133, 631, 724, 923, 1185, 1964
SmoI	CTYRAG	7 cut(s)	101, 133, 631, 724, 923, 1185, 1964
SphI	GCATGC	1 cut(s)	1324
SseBI	AGGCCT	2 cut(s)	267, 1923
SsiI	CCGC	9 cut(s)	274, 754, 980, 1040, 1811, 1880, 1952, 2656, 2659
SspI	AATATT	2 cut(s)	1693, 2746
SspMI	CTAG	2 cut(s)	833, 1215
SstI	GAGCTC	1 cut(s)	780
StuI	AGGCCT	2 cut(s)	267, 1923
StyD4I	CCNGG	5 cut(s)	604, 1028, 1637, 1891, 2430
StyI	CCWWGG	3 cut(s)	69, 824, 2417
TaaI	ACNGT	5 cut(s)	162, 1571, 1991, 2069, 2834
TaiI	ACGT	6 cut(s)	978, 2207, 2439, 2484, 2528, 2952
TaqII	GACCGA	3 cut(s)	1163, 2179, 2898
TatI	WGTACW	3 cut(s)	564, 1507, 2286
TauI	GCSGC	3 cut(s)	1955, 2659, 2662
TfiI	GAWTC	6 cut(s)	676, 964, 1772, 1997, 2422, 2900
Tru1I	TTAA	5 cut(s)	134, 842, 1374, 1794, 2998
Tru9I	TTAA	5 cut(s)	134, 842, 1374, 1794, 2998
TseFI	GTSAC	2 cut(s)	94, 570
TseI	GCWGC	7 cut(s)	315, 729, 829, 1351, 1949, 1955, 2378
Tsp45I	GTSAC	2 cut(s)	94, 570
TspGWI	ACGGA	3 cut(s)	2124, 2313, 2976
Tth111I	GACNNNGTC	1 cut(s)	974
Van91I	CCANNNNNTGG	1 cut(s)	2026
Vha464I	CTTAAG	1 cut(s)	133
VpaK11BI	GGWCC	5 cut(s)	1175, 1400, 1472, 2162, 2910
XagI	CCTNNNNNAGG	1 cut(s)	1488
XceI	RCATGY	4 cut(s)	1203, 1324, 2539, 2800
XcmI	CCANNNNNNNNNTGG	1 cut(s)	2509
XhoI	CTCGAG	1 cut(s)	724
XmnI	GAANNNNTTC	3 cut(s)	1022, 2862, 2904
XspI	CTAG	2 cut(s)	833, 1215
ZrmI	AGTACT	2 cut(s)	566, 1509
Zsp2I	ATGCAT	2 cut(s)	2537, 2584

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.