Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr09

Orthogroup ID

OG0016070

Physical Location & Seq

Genomic Coordinates Reverse (-)

3509801 .. 3512245

Gene Structure 2445 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD09G1052800.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2136 bp

ATGCAGAGCTTCATAGCAGCAATGCCCAATCTAAAACTCTCAAGAAACTCACACCTGCCATTTGTATTCAAACCAAAGCTCGTACCCGCCTCCATTGACGACCCCATCAAGCTTTTGAAGAAAGCAGCCGATACCAAGAACTTACGAACGGGAAAAACAATCCATGCCCATCTCATCGTTTCTGGTGAACCTTCCAAATCCGTTGATATATTTCAAGCAAACTCTCTCATCAACTTATATGCAAAATGTGACCAAGTTTCAATTGCGCGCCACCTGTTTGATTGTTTGCCCAAGAGAAATGTGGTTTCTTGGAGTGCCTTGATGGCGGGGTATTTACACAATGGGATGGCATTGGAAGTTCTTGGCTTGTTCAAGACAATGGTTTCAGTGGACGGGTTGTGCCCGAATGAATACATTTTTGCCACTATTTTTTCCTCTTGTTCTGGCAGTGGGAGAGTTGAAGAGGGGAAGCAGTGTCATGGCTATGTGCTGAAGTCCGGGTTGCTGTCTTATGAGTATGTTAAGAATGCACTTGTTCACATGTATGCCCGTTGTTCGGAAGTGGAATCGGCTATGAGGGTTTTGAACACTGTACCAGGTGGTGATATCCTTTCGTATAATTCAGTTATAAATGGGCTTTTAGAACATGGGCATGTAAGAGAAGCAATGGAAATGTTAGGCATGATGGTAAGCCAGTGCATGGATTGGGACAGTGTTACATACATTACTGTTTTTGGCCTTTGCGCCCGTCTTAAGGATTTAAGATTGGGTTTGCAAGTTCACGGACAAATGTTGAAGAATGATATAAAGTGTGATGTTTTTCTTAGCAGTGCAATGATTGACATGTACGGGAAATGTGGTAAGGTTTCGAATGCAGCAAACGTTTTTGATCGCTTGCAAGAACGGAACATAGTCTCTTGGACGGCAATCATGGCTGCTTATTTCCAAAATGGGTACTTTGAGGATGCATTAGGTGTGTTGTCGAAAATGGGAAACGAAGACATTCTTCCAAATGAATATACTTTTGCAGTCTTGCTTAACTCGAGTGCAGGTTTGTCTGCGCTAAGACAGGGAGACCTACTACACACCTGTGTTGAGAAGTCGGGTTTCAAAGACTATGTCATTGTCGGGAATGCTTTGATCAATATGTATTCCAAGTGTGGCAACATTCAAGCAGCAAATGAAGTTTTTTTGGATATGACATGTCGAGACTCTGTTACCTGGAATGCAATGATATCTGGATTCTCCCATCACGGGCTTGGCAAGGAAGCGCTAAATGTGTTTCAAGACATGTTGGCAGCAGGAGAATGTCCTAACAGTATTACTTTCGTAGGGGTTCTCTCTGCTTGCGCTAGTTTGGGTTTGGTGCAGGAAGGATTCTACTATTTGAACCAGTTAATGAAACAGATTGGCATTGAACCTGGCCTAGAGCACCATACTTGTATTGTGGGGCTCCTCAGCAGGTCTGGACAACTCGATCAAGCTGAGAAATATATGAGGACTATGCCGGTCAAGTGGGACATTGTTGCCTGGCGAACTTTGCTCAATGCTTGTCATGTACATAGGAATTATGGTTTAGGTAAGCAAGTAGCAGAGGTTGTTGTGCGAATGGACCCCAATGATGTGGGAACATATACGCTATTGTCAAATATGTACGCCAAGTCAAGGAGGTGGGATGGAGTTGTGAAGATCCGGAAATTGATGAGGGAAAGAAACATCAAGAAAGAACCTGGGGTGAGCTGGGTGGAGATAAGAAATACTACCCATATCTTTGTTTCAGATGATAACATGCATCCAGAGTCTAGTCAGATACATGAAAAGGTCGGGGAATTGTTGGCCAAGATTAAACCCTTGGGATATGTACCTGATATTGCTGCAGTACTACATGATGTGGAGGATGAGCAGAAGGAAGATTATCTTAGTTATCACAGTGAGAAGTTGGCTATAGCATATGGCCTCATGAAAACGCCTACAAATGCCCCCATTCGTGTTATTAAGAACCTGAGGATATGCGATGATTGCCATGCTGCCGTGAAACTTATTTCAAAAGTCACAAACAGGTTGATAATTGTTAGAGATGCCAATAGATTCCACCAATTTCAGGATGGGAGATGTTCTTGTGCTGATTACTGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DYW_deaminase PPR PPR_2

Protein Analysis

712

Amino Acids

79.32

Weight (kDa)

7.77

Isoelectric Point (pI)

33.79

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_2	PF13041	202 - 248	6.3e-08	PPR repeat family
PPR_2	PF13041	302 - 348	8.3e-11	PPR repeat family
PPR_2	PF13041	404 - 451	5.5e-11	PPR repeat family
PPR	PF01535	406 - 435	8.7e-08	PPR repeat
E_motif	PF20431	521 - 583	2.7e-18	E motif
DYW_deaminase	PF14432	619 - 711	1.9e-41	DYW family of nucleic acid deaminases

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0016070)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G39680
fragaria_vesca	FvH4_6g48230
malus_domestica	MD09G1052800.v1.1
prunus_persica	Prupe.3G265900_v2.0.a1
pyrus_communis	pycom111g04400
rosa_chinensis	RchiOBHm_Chr2g0167741
rosa_laevigata	RLG00000021750
rosa_multiflora	Rmu_sc0002143.1_g000004
rosa_roxburghii	Rroxscaffold_2G00083290
rosa_rugosa	Rorug02G0531800
rosa_samantha	Rh2AG600700 Rh2BG611300 Rh2CG581600 Rh2DG623800
rosa_wichuraiana	Rw2G049860

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	629
AarI	CACCTGC	1 cut(s)	63
Acc36I	ACCTGC	3 cut(s)	63, 1040, 1452
AccB7I	CCANNNNNTGG	1 cut(s)	700
AccII	CGCG	1 cut(s)	268
AccIII	TCCGGA	1 cut(s)	1692
AciI	CCGC	2 cut(s)	87, 326
AclI	AACGTT	1 cut(s)	882
AclWI	GGATC	1 cut(s)	1684
AcoI	YGGCCR	1 cut(s)	1836
AcuI	CTGAAG	1 cut(s)	512
AfaI	GTAC	8 cut(s)	84, 594, 848, 956, 1560, 1655, 1863, 1881
AfeI	AGCGCT	1 cut(s)	1272
AfiI	CCNNNNNNNGG	6 cut(s)	556, 700, 754, 1254, 1665, 2101
AflII	CTTAAG	1 cut(s)	752
AflIII	ACRYGT	4 cut(s)	540, 843, 1202, 1290
AjnI	CCWGG	5 cut(s)	595, 1220, 1420, 1529, 1729
AleI	CACNNNNGTG	1 cut(s)	1089
AluBI	AGCT	5 cut(s)	9, 79, 112, 1484, 1740
AluI	AGCT	5 cut(s)	9, 79, 112, 1484, 1740
Alw21I	GWGCWC	1 cut(s)	1434
Alw26I	GTCTC	3 cut(s)	919, 1068, 1203
AlwI	GGATC	1 cut(s)	1684
Ama87I	CYCGRG	1 cut(s)	1042
Aor13HI	TCCGGA	1 cut(s)	1692
Aor51HI	AGCGCT	1 cut(s)	1272
AoxI	GGCC	4 cut(s)	736, 1423, 1836, 1954
ApeKI	GCWGC	8 cut(s)	17, 125, 875, 935, 1175, 1298, 1874, 2027
ArsI	GACNNNNNNTTYG	2 cut(s)	1104, 1136
Asp700I	GAANNNNTTC	1 cut(s)	1002
AspLEI	GCGC	6 cut(s)	268, 270, 746, 1063, 1273, 1352
AspS9I	GGNCC	1 cut(s)	1612
AsuC2I	CCSGG	1 cut(s)	499
AsuHPI	GGTGA	3 cut(s)	197, 614, 1747
AsuII	TTCGAA	1 cut(s)	869
AvaI	CYCGRG	1 cut(s)	1042
AvaII	GGWCC	1 cut(s)	1612
AxyI	CCTNAGG	1 cut(s)	2003
BaeGI	GKGCMC	1 cut(s)	404
BalI	TGGCCA	1 cut(s)	1838
BanII	GRGCYC	1 cut(s)	1455
BbsI	GAAGAC	1 cut(s)	1005
Bbv12I	GWGCWC	1 cut(s)	1434
BbvCI	CCTCAGC	1 cut(s)	1457
BbvI	GCAGC	8 cut(s)	29, 137, 887, 922, 1187, 1310, 1861, 2014
BccI	CCATC	8 cut(s)	113, 177, 316, 340, 679, 1257, 1670, 2099
BceAI	ACGGC	2 cut(s)	939, 2015
BciT130I	CCWGG	5 cut(s)	597, 1222, 1422, 1531, 1731
BclI	TGATCA	1 cut(s)	1140
BcnI	CCSGG	1 cut(s)	499
BcoDI	GTCTC	3 cut(s)	919, 1068, 1203
BfaI	CTAG	3 cut(s)	1353, 1427, 1803
BfmI	CTRYAG	2 cut(s)	1875, 1944
BfoI	RGCGCY	1 cut(s)	1274
BfrI	CTTAAG	1 cut(s)	752
BfuAI	ACCTGC	3 cut(s)	63, 1040, 1452
BglI	GCCNNNNNGGC	1 cut(s)	323
BisI	GCNGC	8 cut(s)	18, 126, 876, 936, 1176, 1299, 1875, 2028
BlsI	GCNGC	8 cut(s)	19, 127, 877, 937, 1177, 1300, 1876, 2029
BmcAI	AGTACT	1 cut(s)	1881
Bme1390I	CCNGG	6 cut(s)	499, 597, 1222, 1422, 1531, 1731
Bme18I	GGWCC	1 cut(s)	1612
BmeT110I	CYCGRG	1 cut(s)	1042
BmgT120I	GGNCC	1 cut(s)	1612
BmiI	GGNNCC	2 cut(s)	1454, 1614
BmrFI	CCNGG	6 cut(s)	499, 597, 1222, 1422, 1531, 1731
BmsI	GCATC	3 cut(s)	955, 1801, 2068
BpiI	GAAGAC	1 cut(s)	1005
Bpu10I	CCTNAGC	1 cut(s)	1457
Bpu14I	TTCGAA	1 cut(s)	869
BpuEI	CTTGAG	1 cut(s)	25
BpuMI	CCSGG	1 cut(s)	499
BsaI	GGTCTC	1 cut(s)	1068
BsaJI	CCNNGG	2 cut(s)	1730, 1851
BsaWI	WCCGGW	1 cut(s)	1692
Bsc4I	CCNNNNNNNGG	6 cut(s)	556, 700, 754, 1254, 1665, 2101
Bse118I	RCCGGY	1 cut(s)	1507
Bse1I	ACTGG	3 cut(s)	694, 1393, 2135
Bse21I	CCTNAGG	1 cut(s)	2003
Bse3DI	GCAATG	4 cut(s)	27, 672, 840, 1236
BseAI	TCCGGA	1 cut(s)	1692
BseBI	CCWGG	5 cut(s)	597, 1222, 1422, 1531, 1731
BseDI	CCNNGG	2 cut(s)	1730, 1851
BseGI	GGATG	6 cut(s)	351, 970, 1681, 1792, 1903, 2110
BseLI	CCNNNNNNNGG	6 cut(s)	556, 700, 754, 1254, 1665, 2101
BseMI	GCAATG	4 cut(s)	27, 672, 840, 1236
BseMII	CTCAG	3 cut(s)	1471, 1476, 1994
BseNI	ACTGG	3 cut(s)	694, 1393, 2135
BsePI	GCGCGC	1 cut(s)	266
BseRI	GAGGAG	1 cut(s)	1445
BseSI	GKGCMC	1 cut(s)	404
BseXI	GCAGC	8 cut(s)	29, 137, 887, 922, 1187, 1310, 1861, 2014
BseYI	CCCAGC	1 cut(s)	1740
BsgI	GTGCAG	2 cut(s)	1068, 1388
Bsh1236I	CGCG	1 cut(s)	268
BshFI	GGCC	4 cut(s)	738, 1425, 1838, 1956
BsiHKAI	GWGCWC	1 cut(s)	1434
BsiHKCI	CYCGRG	1 cut(s)	1042
BsiSI	CCGG	3 cut(s)	498, 1508, 1693
BslFI	GGGAC	2 cut(s)	722, 1532
BslI	CCNNNNNNNGG	6 cut(s)	556, 700, 754, 1254, 1665, 2101
BsmAI	GTCTC	3 cut(s)	919, 1068, 1203
BsmFI	GGGAC	2 cut(s)	722, 1532
BsmI	GAATGC	4 cut(s)	532, 877, 1138, 1231
BsnI	GGCC	4 cut(s)	738, 1425, 1838, 1956
Bso31I	GGTCTC	1 cut(s)	1068
BsoBI	CYCGRG	1 cut(s)	1042
Bsp119I	TTCGAA	1 cut(s)	869
Bsp1286I	GDGCHC	3 cut(s)	404, 1434, 1455
Bsp13I	TCCGGA	1 cut(s)	1692
Bsp1407I	TGTACA	1 cut(s)	1558
Bsp143I	GATC	4 cut(s)	889, 1140, 1477, 1689
BspACI	CCGC	2 cut(s)	87, 326
BspANI	GGCC	4 cut(s)	738, 1425, 1838, 1956
BspCNI	CTCAG	3 cut(s)	1470, 1477, 1995
BspEI	TCCGGA	1 cut(s)	1692
BspFNI	CGCG	1 cut(s)	268
BspHI	TCATGA	1 cut(s)	1959
BspLI	GGNNCC	2 cut(s)	1454, 1614
BspMAI	CTGCAG	1 cut(s)	1879
BspMI	ACCTGC	3 cut(s)	63, 1040, 1452
BspPI	GGATC	1 cut(s)	1684
BspT104I	TTCGAA	1 cut(s)	869
BspTI	CTTAAG	1 cut(s)	752
BspTNI	GGTCTC	1 cut(s)	1068
BsrDI	GCAATG	4 cut(s)	27, 672, 840, 1236
BsrFI	RCCGGY	1 cut(s)	1507
BsrGI	TGTACA	1 cut(s)	1558
BsrI	ACTGG	3 cut(s)	694, 1393, 2135
BssAI	RCCGGY	1 cut(s)	1507
BssECI	CCNNGG	2 cut(s)	1730, 1851
BssHII	GCGCGC	1 cut(s)	266
BssMI	GATC	4 cut(s)	889, 1140, 1477, 1689
BssT1I	CCWWGG	1 cut(s)	1851
Bst2UI	CCWGG	5 cut(s)	597, 1222, 1422, 1531, 1731
Bst4CI	ACNGT	5 cut(s)	592, 713, 730, 1319, 1931
Bst6I	CTCTTC	1 cut(s)	456
BstAFI	CTTAAG	1 cut(s)	752
BstAUI	TGTACA	1 cut(s)	1558
BstBI	TTCGAA	1 cut(s)	869
BstC8I	GCNNGC	3 cut(s)	268, 896, 1348
BstDEI	CTNAG	6 cut(s)	824, 1064, 1457, 1485, 1919, 2003
BstF5I	GGATG	6 cut(s)	351, 970, 1681, 1792, 1903, 2110
BstFNI	CGCG	1 cut(s)	268
BstH2I	RGCGCY	1 cut(s)	1274
BstHHI	GCGC	6 cut(s)	268, 270, 746, 1063, 1273, 1352
BstKTI	GATC	4 cut(s)	892, 1143, 1480, 1692
BstMAI	GTCTC	3 cut(s)	919, 1068, 1203
BstMBI	GATC	4 cut(s)	889, 1140, 1477, 1689
BstMWI	GCNNNNNNNGC	4 cut(s)	323, 932, 1540, 2019
BstNI	CCWGG	5 cut(s)	597, 1222, 1422, 1531, 1731
BstNSI	RCATGY	6 cut(s)	544, 656, 847, 1206, 1294, 1792
BstSCI	CCNGG	6 cut(s)	497, 595, 1220, 1420, 1529, 1729
BstSFI	CTRYAG	2 cut(s)	1875, 1944
BstSLI	GKGCMC	1 cut(s)	404
BstUI	CGCG	1 cut(s)	268
BstV1I	GCAGC	8 cut(s)	29, 137, 887, 922, 1187, 1310, 1861, 2014
BstV2I	GAAGAC	1 cut(s)	1005
BstX2I	RGATCY	1 cut(s)	1689
BstXI	CCANNNNNNTGG	1 cut(s)	1624
BstYI	RGATCY	1 cut(s)	1689
Bsu36I	CCTNAGG	1 cut(s)	2003
BsuRI	GGCC	4 cut(s)	738, 1425, 1838, 1956
BtgZI	GCGATG	1 cut(s)	2028
BtsCI	GGATG	6 cut(s)	351, 970, 1681, 1792, 1903, 2110
BtsI	GCAGTG	3 cut(s)	454, 479, 835
BtsIMutI	CAGTG	8 cut(s)	393, 454, 479, 588, 701, 718, 835, 1936
BveI	ACCTGC	3 cut(s)	63, 1040, 1452
Cac8I	GCNNGC	3 cut(s)	268, 896, 1348
CciI	TCATGA	1 cut(s)	1959
CfoI	GCGC	6 cut(s)	268, 270, 746, 1063, 1273, 1352
Cfr10I	RCCGGY	1 cut(s)	1507
Cfr13I	GGNCC	1 cut(s)	1612
CsiI	ACCWGGT	1 cut(s)	595
Csp6I	GTAC	8 cut(s)	83, 593, 847, 955, 1559, 1654, 1862, 1880
CviQI	GTAC	8 cut(s)	83, 593, 847, 955, 1559, 1654, 1862, 1880
DdeI	CTNAG	6 cut(s)	824, 1064, 1457, 1485, 1919, 2003
DpnI	GATC	4 cut(s)	891, 1142, 1479, 1691
DpnII	GATC	4 cut(s)	889, 1140, 1477, 1689
EaeI	YGGCCR	1 cut(s)	1836
Eam1104I	CTCTTC	1 cut(s)	456
EarI	CTCTTC	1 cut(s)	456
Eco130I	CCWWGG	1 cut(s)	1851
Eco24I	GRGCYC	1 cut(s)	1455
Eco31I	GGTCTC	1 cut(s)	1068
Eco32I	GATATC	2 cut(s)	607, 1236
Eco47I	GGWCC	1 cut(s)	1612
Eco47III	AGCGCT	1 cut(s)	1272
Eco57I	CTGAAG	1 cut(s)	512
Eco81I	CCTNAGG	1 cut(s)	2003
Eco88I	CYCGRG	1 cut(s)	1042
EcoRII	CCWGG	5 cut(s)	595, 1220, 1420, 1529, 1729
EcoRV	GATATC	2 cut(s)	607, 1236
EcoT14I	CCWWGG	1 cut(s)	1851
EcoT22I	ATGCAT	2 cut(s)	970, 1794
EcoT38I	GRGCYC	1 cut(s)	1455
ErhI	CCWWGG	1 cut(s)	1851
FalI	AAGNNNNNCTT	4 cut(s)	990, 1022, 1902, 1934
FaqI	GGGAC	2 cut(s)	722, 1532
FauI	CCCGC	2 cut(s)	94, 319
FauNDI	CATATG	1 cut(s)	1951
FbaI	TGATCA	1 cut(s)	1140
Fnu4HI	GCNGC	8 cut(s)	18, 126, 876, 936, 1176, 1299, 1875, 2028
FokI	GGATG	6 cut(s)	358, 977, 1688, 1779, 1910, 2117
FriOI	GRGCYC	1 cut(s)	1455
Fsp4HI	GCNGC	8 cut(s)	18, 126, 876, 936, 1176, 1299, 1875, 2028
FspBI	CTAG	3 cut(s)	1353, 1427, 1803
GlaI	GCGC	6 cut(s)	267, 269, 745, 1062, 1272, 1351
GluI	GCNGC	8 cut(s)	18, 126, 876, 936, 1176, 1299, 1875, 2028
GsaI	CCCAGC	1 cut(s)	1744
HaeII	RGCGCY	1 cut(s)	1274
HaeIII	GGCC	4 cut(s)	738, 1425, 1838, 1956
HapII	CCGG	3 cut(s)	498, 1508, 1693
HhaI	GCGC	6 cut(s)	268, 270, 746, 1063, 1273, 1352
Hin6I	GCGC	6 cut(s)	266, 268, 744, 1061, 1271, 1350
HinP1I	GCGC	6 cut(s)	266, 268, 744, 1061, 1271, 1350
HindIII	AAGCTT	1 cut(s)	110
HinfI	GANTC	6 cut(s)	566, 1211, 1242, 1377, 1799, 2088
HpaII	CCGG	3 cut(s)	498, 1508, 1693
HphI	GGTGA	3 cut(s)	197, 614, 1747
Hpy166II	GTNNAC	4 cut(s)	188, 391, 538, 781
Hpy188I	TCNGA	3 cut(s)	559, 1780, 1809
Hpy8I	GTNNAC	4 cut(s)	188, 391, 538, 781
HpyAV	CCTTC	3 cut(s)	201, 1367, 1900
HpyCH4III	ACNGT	5 cut(s)	592, 713, 730, 1319, 1931
HpyCH4IV	ACGT	1 cut(s)	882
HpyF10VI	GCNNNNNNNGC	4 cut(s)	323, 932, 1540, 2019
HpyF3I	CTNAG	6 cut(s)	824, 1064, 1457, 1485, 1919, 2003
HpySE526I	ACGT	1 cut(s)	882
HspAI	GCGC	6 cut(s)	266, 268, 744, 1061, 1271, 1350
Kpn2I	TCCGGA	1 cut(s)	1692
Ksp22I	TGATCA	1 cut(s)	1140
Kzo9I	GATC	4 cut(s)	889, 1140, 1477, 1689
LmnI	GCTCC	1 cut(s)	1458
Lsp1109I	GCAGC	8 cut(s)	29, 137, 887, 922, 1187, 1310, 1861, 2014
LweI	GCATC	3 cut(s)	955, 1801, 2068
MabI	ACCWGGT	1 cut(s)	595
MaeI	CTAG	3 cut(s)	1353, 1427, 1803
MaeII	ACGT	1 cut(s)	882
MaeIII	GTNAC	4 cut(s)	248, 715, 1216, 2050
MalI	GATC	4 cut(s)	891, 1142, 1479, 1691
MboI	GATC	4 cut(s)	889, 1140, 1477, 1689
MboII	GAAGA	7 cut(s)	130, 473, 808, 998, 1010, 1699, 1922
MfeI	CAATTG	1 cut(s)	261
MflI	RGATCY	1 cut(s)	1689
MhlI	GDGCHC	3 cut(s)	404, 1434, 1455
MlsI	TGGCCA	1 cut(s)	1838
MluCI	AATT	7 cut(s)	261, 619, 1567, 1697, 1829, 2067, 2096
MluNI	TGGCCA	1 cut(s)	1838
MlyI	GAGTC	2 cut(s)	1205, 1808
Mox20I	TGGCCA	1 cut(s)	1838
Mph1103I	ATGCAT	2 cut(s)	970, 1794
MroI	TCCGGA	1 cut(s)	1692
MroXI	GAANNNNTTC	1 cut(s)	1002
MscI	TGGCCA	1 cut(s)	1838
MseI	TTAA	7 cut(s)	522, 753, 761, 1038, 1397, 1845, 1995
MslI	CAYNNNNRTG	4 cut(s)	483, 543, 651, 1089
Msp20I	TGGCCA	1 cut(s)	1838
MspCI	CTTAAG	1 cut(s)	752
MspI	CCGG	3 cut(s)	498, 1508, 1693
MspR9I	CCNGG	6 cut(s)	499, 597, 1222, 1422, 1531, 1731
MunI	CAATTG	1 cut(s)	261
Mva1269I	GAATGC	4 cut(s)	532, 877, 1138, 1231
MvaI	CCWGG	5 cut(s)	597, 1222, 1422, 1531, 1731
MvnI	CGCG	1 cut(s)	268
MwoI	GCNNNNNNNGC	4 cut(s)	323, 932, 1540, 2019
NciI	CCSGG	1 cut(s)	499
NdeI	CATATG	1 cut(s)	1951
NdeII	GATC	4 cut(s)	889, 1140, 1477, 1689
NlaIV	GGNNCC	2 cut(s)	1454, 1614
NmuCI	GTSAC	2 cut(s)	248, 2050
NsiI	ATGCAT	2 cut(s)	970, 1794
NspI	RCATGY	6 cut(s)	544, 656, 847, 1206, 1294, 1792
NspV	TTCGAA	1 cut(s)	869
OliI	CACNNNNGTG	1 cut(s)	1089
PaeR7I	CTCGAG	1 cut(s)	1042
PagI	TCATGA	1 cut(s)	1959
PaqCI	CACCTGC	1 cut(s)	63
PauI	GCGCGC	1 cut(s)	266
PciI	ACATGT	4 cut(s)	540, 843, 1202, 1290
PctI	GAATGC	4 cut(s)	532, 877, 1138, 1231
PdmI	GAANNNNTTC	1 cut(s)	1002
PfeI	GAWTC	4 cut(s)	566, 1242, 1377, 2088
PflFI	GACNNNGTC	1 cut(s)	1118
PflMI	CCANNNNNTGG	1 cut(s)	700
PkrI	GCNGC	8 cut(s)	19, 127, 877, 937, 1177, 1300, 1876, 2029
PleI	GAGTC	2 cut(s)	1205, 1807
PpsI	GAGTC	2 cut(s)	1205, 1807
PscI	ACATGT	4 cut(s)	540, 843, 1202, 1290
PsiI	TTATAA	1 cut(s)	629
Psp1406I	AACGTT	1 cut(s)	882
Psp6I	CCWGG	5 cut(s)	595, 1220, 1420, 1529, 1729
PspFI	CCCAGC	1 cut(s)	1740
PspGI	CCWGG	5 cut(s)	595, 1220, 1420, 1529, 1729
PspN4I	GGNNCC	2 cut(s)	1454, 1614
PspPI	GGNCC	1 cut(s)	1612
PspXI	VCTCGAGB	1 cut(s)	1042
PstI	CTGCAG	1 cut(s)	1879
PsuI	RGATCY	1 cut(s)	1689
PsyI	GACNNNGTC	1 cut(s)	1118
PteI	GCGCGC	1 cut(s)	266
RsaI	GTAC	8 cut(s)	84, 594, 848, 956, 1560, 1655, 1863, 1881
RsaNI	GTAC	8 cut(s)	83, 593, 847, 955, 1559, 1654, 1862, 1880
RseI	CAYNNNNRTG	4 cut(s)	483, 543, 651, 1089
SaqAI	TTAA	7 cut(s)	522, 753, 761, 1038, 1397, 1845, 1995
SatI	GCNGC	8 cut(s)	18, 126, 876, 936, 1176, 1299, 1875, 2028
Sau3AI	GATC	4 cut(s)	889, 1140, 1477, 1689
Sau96I	GGNCC	1 cut(s)	1612
ScaI	AGTACT	1 cut(s)	1881
SchI	GAGTC	2 cut(s)	1205, 1808
ScrFI	CCNGG	6 cut(s)	499, 597, 1222, 1422, 1531, 1731
SduI	GDGCHC	3 cut(s)	404, 1434, 1455
SexAI	ACCWGGT	1 cut(s)	595
SfaNI	GCATC	3 cut(s)	955, 1801, 2068
SfcI	CTRYAG	2 cut(s)	1875, 1944
Sfr274I	CTCGAG	1 cut(s)	1042
SfuI	TTCGAA	1 cut(s)	869
SinI	GGWCC	1 cut(s)	1612
SlaI	CTCGAG	1 cut(s)	1042
SmiMI	CAYNNNNRTG	4 cut(s)	483, 543, 651, 1089
SmlI	CTYRAG	3 cut(s)	40, 752, 1042
SmoI	CTYRAG	3 cut(s)	40, 752, 1042
Sse9I	AATT	7 cut(s)	261, 619, 1567, 1697, 1829, 2067, 2096
SsiI	CCGC	2 cut(s)	87, 326
SspMI	CTAG	3 cut(s)	1353, 1427, 1803
StyD4I	CCNGG	6 cut(s)	497, 595, 1220, 1420, 1529, 1729
StyI	CCWWGG	1 cut(s)	1851
TaaI	ACNGT	5 cut(s)	592, 713, 730, 1319, 1931
TaiI	ACGT	1 cut(s)	885
TaqI	TCGA	5 cut(s)	869, 983, 1043, 1207, 1476
TasI	AATT	7 cut(s)	261, 619, 1567, 1697, 1829, 2067, 2096
TatI	WGTACW	2 cut(s)	1558, 1879
TfiI	GAWTC	4 cut(s)	566, 1242, 1377, 2088
Tru1I	TTAA	7 cut(s)	522, 753, 761, 1038, 1397, 1845, 1995
Tru9I	TTAA	7 cut(s)	522, 753, 761, 1038, 1397, 1845, 1995
TscAI	CASTG	8 cut(s)	393, 454, 479, 595, 701, 718, 835, 1936
TseFI	GTSAC	2 cut(s)	248, 2050
TseI	GCWGC	8 cut(s)	17, 125, 875, 935, 1175, 1298, 1874, 2027
Tsp45I	GTSAC	2 cut(s)	248, 2050
TspDTI	ATGAA	6 cut(s)	423, 1029, 1197, 1415, 1830, 1976
TspGWI	ACGGA	3 cut(s)	190, 798, 919
TspRI	CASTG	8 cut(s)	393, 454, 479, 595, 701, 718, 835, 1936
Tth111I	GACNNNGTC	1 cut(s)	1118
Van91I	CCANNNNNTGG	1 cut(s)	700
Vha464I	CTTAAG	1 cut(s)	752
VpaK11BI	GGWCC	1 cut(s)	1612
XceI	RCATGY	6 cut(s)	544, 656, 847, 1206, 1294, 1792
XcmI	CCANNNNNNNNNTGG	3 cut(s)	298, 1256, 2102
XhoI	CTCGAG	1 cut(s)	1042
XmnI	GAANNNNTTC	1 cut(s)	1002
XspI	CTAG	3 cut(s)	1353, 1427, 1803
ZrmI	AGTACT	1 cut(s)	1881
Zsp2I	ATGCAT	2 cut(s)	970, 1794

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.