Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

SuperScaffold_111

Orthogroup ID

OG0016070

Physical Location & Seq

Genomic Coordinates Reverse (-)

2655795 .. 2657999

Gene Structure 2205 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom111g04400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2205 bp

ATGTTAGCAAAACAAAAAGAAGCAAAAGCAGAATCCAATAAAACTGAATCCAACGGCGACAAAACTTGGATGCAGAGCGTCATAGCAGCAATGCCCAATCTAAAACTCTCAAGAAACTCACACCTGCCATATGTATTCAAACCAAAGCTCGTACCCGCCTCCATTGACGACCCCGTCAAGCTTTTGAAGAAAGCAGCCGATACCAAGAACTTACGAACAGGCAAAACAATCCATGCCCATCTCATCGTTTCCGGTGAACCTTCCAAATCCGTTGATATATTTCAAGCAAACTCTCTCGTCAACTTGTACGTAAAATGTGACCAAGTTTCAATTGCGCGCCACCTGTTTGATTGTTTGCCCAAGAGAAATGTGGTTTCTTGGAGTGCCTTGATGGCGGGGTATTTACACAATGGGATGGCATTGGAAGTTCTTGGCTTGTTCAAGACAATGGTTTCGGTGGACGGGTTGTGCCCGAATGAATACATTTTTGCCACTGTTCTTTCCTCTTGTTCTGGCAGTGGGAGAGTTGAAGAGGGGAAGCAGTGTCATGGCTATGTGTTGAAGTCCGGGTTGCTGTCTTATGAGTATGTTAAGAATGCACTTGTTCACATGTATTCGAGTTGTTCGGAAGTGGGATCGGCTATGAGGGTTTTGAACACTGTGCCAGGTGGTGATATCCTTTCGTATAATTCAGTTATAAATGGGCTTTTAGAACATGGGCATGTAAGAGAAGCAATGGAAATGTTAGGCATGATGGCAAGCCAGTGCATGGATTGGGATAGTGTTACATACATTACTGTTTTTGGCCTTTGCGCCCATCTTAAGGATTTAAGATTGGGTTTGCAAGTTCACGGACAAATGTTGAAGAATGATATAAAGTGTGATGTTTTTCTTAGCAGTGCAATGATTGACATGTACGGGAAATGTGGTAAGGTTTTGAACGCAGTGAAAGTTTTTGATCGCTTGCAAGAACGGAACATAGTCTCTTGGACGGCAATCATGGCTGCTTATTTCCAAAATGGGTATTTTGAGGATGCATTAGGTGTATTGTCGAAAATGGGAAATGAAGACATTCTTCCAAATGAATATACTTTTGCTGTCTTGCTTAACTCGAGTGCAGGTTTGTCTGCGCTAAGACAGGGAGACCTACTACACACCTGTGTTGAGAAGTCGGGTTTCAAAGACTATGTCATTGTTGGGAATGCTTTGATCAATATGTATTCCAAGTGTGGCAACATTCAAGCAGCAAATGTAGTTTTCTTGGATATGACATGTCGAGACTCTGTTACCTGGAATGCAATGATATCTGGATTCTCCCATCACGGGCTTGGCAAGGAAGCACTAAATGTGTTTCAAGACATGTTGGCAGCAGGAGAATGTCCTAACAATATTACTTTTGTAGGGGTTCTCTCTGCTTGCGCGAGTTTGGGTTTGGTGCAGGAAGGATTCTACTATTTGAACCAGTTAATGAAACAGATTGGCATTGAACCTGGCCTAGAGCACCATACTTGTATTGTGGGGCTCCTCAGCAGGTCTGGACAACTTGATCAAGCTGAGAAATATATGAGGACTATGCCAGTCAAGTGGGACATTGTTGCCTGGCGAACTTTGCTCAATGCTTGTCATGTACATAGGAATTACGGTTTAGGTAAGCAAGTAGCAGAGGTTGTTGTGCAAATGAACCCCAATGATGTGGGAACGTATACGCTATTGTCAAATATGTATGCCAAGGCAAGGAGGTGGGATGGAGTTGTAAAGATTCGGAAATTGATGAGGGAAAGAAACATCAAGAAAGAACCTGGGGTGAGCTGGGTGGAGATAAGAAATACTACCCATATCTTTGTTTCAGATGATAACATGCATCCAGAGTCCAGTCAGATACATGAAAAGGTCGGGGAATTGTTGGCCAAGATTAAACCATTGGGATATGTACCAGATATTGCTGCAGTACTACATGATGTGGAGGATGAGCAGAAGGAAGATTATCTTAGTTATCACAGTGAGAAGTTGGCTATAGCATATGGCCTCATGAAAACGCCTACAAATGCACCCATTCGTGTTATTAAGAACCTGAGGATATGCGATGATTGCCATGCTGCCGTGAAACTTATTTCAAAAGTCACAAACAGGTTGATAATTGTTAGAGATGCCAATAGATTCCACCAATTTCAGGATGGGAGATGTTCTTGTGCTGATTACTGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DYW_deaminase PPR PPR_2

Protein Analysis

735

Amino Acids

81.66

Weight (kDa)

8.1

Isoelectric Point (pI)

34.19

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_2	PF13041	225 - 271	1.9e-07	PPR repeat family
PPR_2	PF13041	325 - 371	8.7e-11	PPR repeat family
PPR_2	PF13041	427 - 474	7e-11	PPR repeat family
PPR	PF01535	429 - 458	9e-08	PPR repeat
E_motif	PF20431	544 - 606	8.2e-19	E motif
DYW_deaminase	PF14432	642 - 734	2e-41	DYW family of nucleic acid deaminases

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0016070)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G39680
fragaria_vesca	FvH4_6g48230
malus_domestica	MD09G1052800.v1.1
prunus_persica	Prupe.3G265900_v2.0.a1
pyrus_communis	pycom111g04400
rosa_chinensis	RchiOBHm_Chr2g0167741
rosa_laevigata	RLG00000021750
rosa_multiflora	Rmu_sc0002143.1_g000004
rosa_roxburghii	Rroxscaffold_2G00083290
rosa_rugosa	Rorug02G0531800
rosa_samantha	Rh2AG600700 Rh2BG611300 Rh2CG581600 Rh2DG623800
rosa_wichuraiana	Rw2G049860

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	698
AarI	CACCTGC	1 cut(s)	132
AasI	GACNNNNNNGTC	1 cut(s)	173
Acc36I	ACCTGC	3 cut(s)	132, 1109, 1521
AccB7I	CCANNNNNTGG	1 cut(s)	769
AccI	GTMKAC	1 cut(s)	1703
AccII	CGCG	2 cut(s)	337, 1421
AciI	CCGC	2 cut(s)	156, 395
AclWI	GGATC	1 cut(s)	643
AcoI	YGGCCR	1 cut(s)	1905
AfaI	GTAC	6 cut(s)	153, 308, 917, 1629, 1932, 1950
AfiI	CCNNNNNNNGG	5 cut(s)	769, 823, 1323, 1734, 2170
AflII	CTTAAG	1 cut(s)	821
AflIII	ACRYGT	4 cut(s)	609, 912, 1271, 1359
AjnI	CCWGG	5 cut(s)	664, 1289, 1489, 1598, 1798
AleI	CACNNNNGTG	1 cut(s)	1158
AluBI	AGCT	4 cut(s)	148, 181, 1553, 1809
AluI	AGCT	4 cut(s)	148, 181, 1553, 1809
Alw21I	GWGCWC	1 cut(s)	1503
Alw26I	GTCTC	3 cut(s)	988, 1137, 1272
AlwI	GGATC	1 cut(s)	643
Ama87I	CYCGRG	1 cut(s)	1111
AoxI	GGCC	4 cut(s)	805, 1492, 1905, 2023
ApeKI	GCWGC	7 cut(s)	86, 194, 1004, 1244, 1367, 1943, 2096
ArsI	GACNNNNNNTTYG	4 cut(s)	436, 468, 1173, 1205
Asp700I	GAANNNNTTC	1 cut(s)	1071
AspLEI	GCGC	5 cut(s)	337, 339, 815, 1132, 1421
AsuC2I	CCSGG	1 cut(s)	568
AsuHPI	GGTGA	3 cut(s)	266, 683, 1816
AvaI	CYCGRG	1 cut(s)	1111
AxyI	CCTNAGG	1 cut(s)	2072
BaeGI	GKGCMC	1 cut(s)	473
BalI	TGGCCA	1 cut(s)	1907
BanII	GRGCYC	1 cut(s)	1524
BbsI	GAAGAC	1 cut(s)	1074
Bbv12I	GWGCWC	1 cut(s)	1503
BbvCI	CCTCAGC	1 cut(s)	1526
BbvI	GCAGC	7 cut(s)	98, 206, 991, 1256, 1379, 1930, 2083
BccI	CCATC	8 cut(s)	246, 385, 409, 748, 825, 1326, 1739, 2168
BceAI	ACGGC	3 cut(s)	70, 1008, 2084
BciT130I	CCWGG	5 cut(s)	666, 1291, 1491, 1600, 1800
BclI	TGATCA	2 cut(s)	1209, 1546
BcnI	CCSGG	1 cut(s)	568
BcoDI	GTCTC	3 cut(s)	988, 1137, 1272
BfaI	CTAG	1 cut(s)	1496
BfmI	CTRYAG	2 cut(s)	1944, 2013
BfrI	CTTAAG	1 cut(s)	821
BfuAI	ACCTGC	3 cut(s)	132, 1109, 1521
BglI	GCCNNNNNGGC	1 cut(s)	392
BisI	GCNGC	7 cut(s)	87, 195, 1005, 1245, 1368, 1944, 2097
BlsI	GCNGC	7 cut(s)	88, 196, 1006, 1246, 1369, 1945, 2098
BmcAI	AGTACT	1 cut(s)	1950
Bme1390I	CCNGG	6 cut(s)	568, 666, 1291, 1491, 1600, 1800
BmeT110I	CYCGRG	1 cut(s)	1111
BmiI	GGNNCC	1 cut(s)	1523
BmrFI	CCNGG	6 cut(s)	568, 666, 1291, 1491, 1600, 1800
BmsI	GCATC	4 cut(s)	60, 1024, 1870, 2137
BpiI	GAAGAC	1 cut(s)	1074
Bpu10I	CCTNAGC	1 cut(s)	1526
BpuEI	CTTGAG	1 cut(s)	94
BpuMI	CCSGG	1 cut(s)	568
BsaAI	YACGTR	1 cut(s)	310
BsaI	GGTCTC	1 cut(s)	1137
BsaJI	CCNNGG	2 cut(s)	1728, 1799
BsaWI	WCCGGW	1 cut(s)	251
Bsc4I	CCNNNNNNNGG	5 cut(s)	769, 823, 1323, 1734, 2170
Bse1I	ACTGG	5 cut(s)	763, 1462, 1577, 1872, 2204
Bse21I	CCTNAGG	1 cut(s)	2072
Bse3DI	GCAATG	4 cut(s)	96, 741, 909, 1305
BseBI	CCWGG	5 cut(s)	666, 1291, 1491, 1600, 1800
BseDI	CCNNGG	2 cut(s)	1728, 1799
BseGI	GGATG	7 cut(s)	75, 420, 1039, 1750, 1861, 1972, 2179
BseLI	CCNNNNNNNGG	5 cut(s)	769, 823, 1323, 1734, 2170
BseMI	GCAATG	4 cut(s)	96, 741, 909, 1305
BseMII	CTCAG	3 cut(s)	1540, 1545, 2063
BseNI	ACTGG	5 cut(s)	763, 1462, 1577, 1872, 2204
BsePI	GCGCGC	1 cut(s)	335
BseRI	GAGGAG	1 cut(s)	1514
BseSI	GKGCMC	1 cut(s)	473
BseXI	GCAGC	7 cut(s)	98, 206, 991, 1256, 1379, 1930, 2083
BseYI	CCCAGC	1 cut(s)	1809
BsgI	GTGCAG	2 cut(s)	1137, 1457
Bsh1236I	CGCG	2 cut(s)	337, 1421
BshFI	GGCC	4 cut(s)	807, 1494, 1907, 2025
BsiHKAI	GWGCWC	1 cut(s)	1503
BsiHKCI	CYCGRG	1 cut(s)	1111
BsiSI	CCGG	2 cut(s)	252, 567
BslFI	GGGAC	1 cut(s)	1601
BslI	CCNNNNNNNGG	5 cut(s)	769, 823, 1323, 1734, 2170
BsmAI	GTCTC	3 cut(s)	988, 1137, 1272
BsmFI	GGGAC	1 cut(s)	1601
BsmI	GAATGC	3 cut(s)	601, 1207, 1300
BsnI	GGCC	4 cut(s)	807, 1494, 1907, 2025
Bso31I	GGTCTC	1 cut(s)	1137
BsoBI	CYCGRG	1 cut(s)	1111
Bsp1286I	GDGCHC	3 cut(s)	473, 1503, 1524
Bsp1407I	TGTACA	1 cut(s)	1627
Bsp143I	GATC	4 cut(s)	635, 958, 1209, 1546
BspACI	CCGC	2 cut(s)	156, 395
BspANI	GGCC	4 cut(s)	807, 1494, 1907, 2025
BspCNI	CTCAG	3 cut(s)	1539, 1546, 2064
BspFNI	CGCG	2 cut(s)	337, 1421
BspHI	TCATGA	1 cut(s)	2028
BspLI	GGNNCC	1 cut(s)	1523
BspMAI	CTGCAG	1 cut(s)	1948
BspMI	ACCTGC	3 cut(s)	132, 1109, 1521
BspPI	GGATC	1 cut(s)	643
BspTI	CTTAAG	1 cut(s)	821
BspTNI	GGTCTC	1 cut(s)	1137
BsrDI	GCAATG	4 cut(s)	96, 741, 909, 1305
BsrGI	TGTACA	1 cut(s)	1627
BsrI	ACTGG	5 cut(s)	763, 1462, 1577, 1872, 2204
BssECI	CCNNGG	2 cut(s)	1728, 1799
BssHII	GCGCGC	1 cut(s)	335
BssMI	GATC	4 cut(s)	635, 958, 1209, 1546
BssNAI	GTATAC	1 cut(s)	1704
BssT1I	CCWWGG	1 cut(s)	1728
Bst1107I	GTATAC	1 cut(s)	1704
Bst2UI	CCWGG	5 cut(s)	666, 1291, 1491, 1600, 1800
Bst4CI	ACNGT	5 cut(s)	496, 661, 799, 1643, 2000
Bst6I	CTCTTC	1 cut(s)	525
BstAFI	CTTAAG	1 cut(s)	821
BstAUI	TGTACA	1 cut(s)	1627
BstBAI	YACGTR	1 cut(s)	310
BstC8I	GCNNGC	4 cut(s)	337, 760, 965, 1417
BstDEI	CTNAG	6 cut(s)	893, 1133, 1526, 1554, 1988, 2072
BstF5I	GGATG	7 cut(s)	75, 420, 1039, 1750, 1861, 1972, 2179
BstFNI	CGCG	2 cut(s)	337, 1421
BstHHI	GCGC	5 cut(s)	337, 339, 815, 1132, 1421
BstKTI	GATC	4 cut(s)	638, 961, 1212, 1549
BstMAI	GTCTC	3 cut(s)	988, 1137, 1272
BstMBI	GATC	4 cut(s)	635, 958, 1209, 1546
BstMWI	GCNNNNNNNGC	4 cut(s)	392, 1001, 1609, 2088
BstNI	CCWGG	5 cut(s)	666, 1291, 1491, 1600, 1800
BstNSI	RCATGY	6 cut(s)	613, 725, 916, 1275, 1363, 1861
BstSCI	CCNGG	6 cut(s)	566, 664, 1289, 1489, 1598, 1798
BstSFI	CTRYAG	2 cut(s)	1944, 2013
BstSLI	GKGCMC	1 cut(s)	473
BstSNI	TACGTA	1 cut(s)	310
BstUI	CGCG	2 cut(s)	337, 1421
BstV1I	GCAGC	7 cut(s)	98, 206, 991, 1256, 1379, 1930, 2083
BstV2I	GAAGAC	1 cut(s)	1074
BstXI	CCANNNNNNTGG	2 cut(s)	1584, 1693
BstZ17I	GTATAC	1 cut(s)	1704
Bsu36I	CCTNAGG	1 cut(s)	2072
BsuRI	GGCC	4 cut(s)	807, 1494, 1907, 2025
BtgZI	GCGATG	1 cut(s)	2097
BtsCI	GGATG	7 cut(s)	75, 420, 1039, 1750, 1861, 1972, 2179
BtsI	GCAGTG	4 cut(s)	523, 548, 904, 951
BtsIMutI	CAGTG	8 cut(s)	492, 523, 548, 657, 770, 904, 951, 2005
BveI	ACCTGC	3 cut(s)	132, 1109, 1521
Cac8I	GCNNGC	4 cut(s)	337, 760, 965, 1417
CciI	TCATGA	1 cut(s)	2028
CfoI	GCGC	5 cut(s)	337, 339, 815, 1132, 1421
CseI	GACGC	1 cut(s)	67
Csp6I	GTAC	6 cut(s)	152, 307, 916, 1628, 1931, 1949
CviQI	GTAC	6 cut(s)	152, 307, 916, 1628, 1931, 1949
DdeI	CTNAG	6 cut(s)	893, 1133, 1526, 1554, 1988, 2072
DpnI	GATC	4 cut(s)	637, 960, 1211, 1548
DpnII	GATC	4 cut(s)	635, 958, 1209, 1546
DrdI	GACNNNNNNGTC	1 cut(s)	173
DseDI	GACNNNNNNGTC	1 cut(s)	173
EaeI	YGGCCR	1 cut(s)	1905
Eam1104I	CTCTTC	1 cut(s)	525
EarI	CTCTTC	1 cut(s)	525
Eco105I	TACGTA	1 cut(s)	310
Eco130I	CCWWGG	1 cut(s)	1728
Eco24I	GRGCYC	1 cut(s)	1524
Eco31I	GGTCTC	1 cut(s)	1137
Eco32I	GATATC	2 cut(s)	676, 1305
Eco81I	CCTNAGG	1 cut(s)	2072
Eco88I	CYCGRG	1 cut(s)	1111
EcoRII	CCWGG	5 cut(s)	664, 1289, 1489, 1598, 1798
EcoRV	GATATC	2 cut(s)	676, 1305
EcoT14I	CCWWGG	1 cut(s)	1728
EcoT22I	ATGCAT	2 cut(s)	1039, 1863
EcoT38I	GRGCYC	1 cut(s)	1524
ErhI	CCWWGG	1 cut(s)	1728
FalI	AAGNNNNNCTT	4 cut(s)	1059, 1091, 1971, 2003
FaqI	GGGAC	1 cut(s)	1601
FauI	CCCGC	2 cut(s)	163, 388
FauNDI	CATATG	2 cut(s)	130, 2020
FbaI	TGATCA	2 cut(s)	1209, 1546
FblI	GTMKAC	1 cut(s)	1703
Fnu4HI	GCNGC	7 cut(s)	87, 195, 1005, 1245, 1368, 1944, 2097
FokI	GGATG	7 cut(s)	82, 427, 1046, 1757, 1848, 1979, 2186
FriOI	GRGCYC	1 cut(s)	1524
Fsp4HI	GCNGC	7 cut(s)	87, 195, 1005, 1245, 1368, 1944, 2097
FspBI	CTAG	1 cut(s)	1496
GlaI	GCGC	5 cut(s)	336, 338, 814, 1131, 1420
GluI	GCNGC	7 cut(s)	87, 195, 1005, 1245, 1368, 1944, 2097
GsaI	CCCAGC	1 cut(s)	1813
HaeIII	GGCC	4 cut(s)	807, 1494, 1907, 2025
HapII	CCGG	2 cut(s)	252, 567
HgaI	GACGC	1 cut(s)	67
HhaI	GCGC	5 cut(s)	337, 339, 815, 1132, 1421
Hin6I	GCGC	5 cut(s)	335, 337, 813, 1130, 1419
HinP1I	GCGC	5 cut(s)	335, 337, 813, 1130, 1419
HincII	GTYRAC	1 cut(s)	301
HindII	GTYRAC	1 cut(s)	301
HindIII	AAGCTT	1 cut(s)	179
HinfI	GANTC	8 cut(s)	32, 47, 1280, 1311, 1446, 1759, 1868, 2157
HpaII	CCGG	2 cut(s)	252, 567
HphI	GGTGA	3 cut(s)	266, 683, 1816
Hpy166II	GTNNAC	6 cut(s)	257, 301, 460, 607, 850, 1704
Hpy188I	TCNGA	4 cut(s)	628, 1764, 1849, 1878
Hpy8I	GTNNAC	6 cut(s)	257, 301, 460, 607, 850, 1704
HpyAV	CCTTC	3 cut(s)	270, 1436, 1969
HpyCH4III	ACNGT	5 cut(s)	496, 661, 799, 1643, 2000
HpyCH4IV	ACGT	2 cut(s)	309, 1700
HpyF10VI	GCNNNNNNNGC	4 cut(s)	392, 1001, 1609, 2088
HpyF3I	CTNAG	6 cut(s)	893, 1133, 1526, 1554, 1988, 2072
HpySE526I	ACGT	2 cut(s)	309, 1700
HspAI	GCGC	5 cut(s)	335, 337, 813, 1130, 1419
Ksp22I	TGATCA	2 cut(s)	1209, 1546
Kzo9I	GATC	4 cut(s)	635, 958, 1209, 1546
LmnI	GCTCC	1 cut(s)	1527
Lsp1109I	GCAGC	7 cut(s)	98, 206, 991, 1256, 1379, 1930, 2083
LweI	GCATC	4 cut(s)	60, 1024, 1870, 2137
MaeI	CTAG	1 cut(s)	1496
MaeII	ACGT	2 cut(s)	309, 1700
MaeIII	GTNAC	4 cut(s)	317, 784, 1285, 2119
MalI	GATC	4 cut(s)	637, 960, 1211, 1548
MboI	GATC	4 cut(s)	635, 958, 1209, 1546
MboII	GAAGA	6 cut(s)	199, 542, 877, 1067, 1079, 1991
MfeI	CAATTG	1 cut(s)	330
MhlI	GDGCHC	3 cut(s)	473, 1503, 1524
MlsI	TGGCCA	1 cut(s)	1907
MluCI	AATT	7 cut(s)	330, 688, 1636, 1766, 1898, 2136, 2165
MluNI	TGGCCA	1 cut(s)	1907
MlyI	GAGTC	2 cut(s)	1274, 1877
MmeI	TCCRAC	1 cut(s)	75
Mox20I	TGGCCA	1 cut(s)	1907
Mph1103I	ATGCAT	2 cut(s)	1039, 1863
MroXI	GAANNNNTTC	1 cut(s)	1071
MscI	TGGCCA	1 cut(s)	1907
MseI	TTAA	7 cut(s)	591, 822, 830, 1107, 1466, 1914, 2064
MslI	CAYNNNNRTG	3 cut(s)	552, 720, 1158
Msp20I	TGGCCA	1 cut(s)	1907
MspCI	CTTAAG	1 cut(s)	821
MspI	CCGG	2 cut(s)	252, 567
MspR9I	CCNGG	6 cut(s)	568, 666, 1291, 1491, 1600, 1800
MunI	CAATTG	1 cut(s)	330
Mva1269I	GAATGC	3 cut(s)	601, 1207, 1300
MvaI	CCWGG	5 cut(s)	666, 1291, 1491, 1600, 1800
MvnI	CGCG	2 cut(s)	337, 1421
MwoI	GCNNNNNNNGC	4 cut(s)	392, 1001, 1609, 2088
NciI	CCSGG	1 cut(s)	568
NdeI	CATATG	2 cut(s)	130, 2020
NdeII	GATC	4 cut(s)	635, 958, 1209, 1546
NlaIV	GGNNCC	1 cut(s)	1523
NmuCI	GTSAC	2 cut(s)	317, 2119
NsiI	ATGCAT	2 cut(s)	1039, 1863
NspI	RCATGY	6 cut(s)	613, 725, 916, 1275, 1363, 1861
OliI	CACNNNNGTG	1 cut(s)	1158
PaeR7I	CTCGAG	1 cut(s)	1111
PagI	TCATGA	1 cut(s)	2028
PaqCI	CACCTGC	1 cut(s)	132
PauI	GCGCGC	1 cut(s)	335
PciI	ACATGT	4 cut(s)	609, 912, 1271, 1359
PctI	GAATGC	3 cut(s)	601, 1207, 1300
PdmI	GAANNNNTTC	1 cut(s)	1071
PfeI	GAWTC	6 cut(s)	32, 47, 1311, 1446, 1759, 2157
PflFI	GACNNNGTC	2 cut(s)	173, 1187
PflMI	CCANNNNNTGG	1 cut(s)	769
PkrI	GCNGC	7 cut(s)	88, 196, 1006, 1246, 1369, 1945, 2098
PleI	GAGTC	2 cut(s)	1274, 1876
PpsI	GAGTC	2 cut(s)	1274, 1876
Ppu21I	YACGTR	1 cut(s)	310
PscI	ACATGT	4 cut(s)	609, 912, 1271, 1359
PsiI	TTATAA	1 cut(s)	698
Psp6I	CCWGG	5 cut(s)	664, 1289, 1489, 1598, 1798
PspFI	CCCAGC	1 cut(s)	1809
PspGI	CCWGG	5 cut(s)	664, 1289, 1489, 1598, 1798
PspN4I	GGNNCC	1 cut(s)	1523
PspXI	VCTCGAGB	1 cut(s)	1111
PstI	CTGCAG	1 cut(s)	1948
PsyI	GACNNNGTC	2 cut(s)	173, 1187
PteI	GCGCGC	1 cut(s)	335
RsaI	GTAC	6 cut(s)	153, 308, 917, 1629, 1932, 1950
RsaNI	GTAC	6 cut(s)	152, 307, 916, 1628, 1931, 1949
RseI	CAYNNNNRTG	3 cut(s)	552, 720, 1158
SaqAI	TTAA	7 cut(s)	591, 822, 830, 1107, 1466, 1914, 2064
SatI	GCNGC	7 cut(s)	87, 195, 1005, 1245, 1368, 1944, 2097
Sau3AI	GATC	4 cut(s)	635, 958, 1209, 1546
ScaI	AGTACT	1 cut(s)	1950
SchI	GAGTC	2 cut(s)	1274, 1877
ScrFI	CCNGG	6 cut(s)	568, 666, 1291, 1491, 1600, 1800
SduI	GDGCHC	3 cut(s)	473, 1503, 1524
SfaNI	GCATC	4 cut(s)	60, 1024, 1870, 2137
SfcI	CTRYAG	2 cut(s)	1944, 2013
Sfr274I	CTCGAG	1 cut(s)	1111
SlaI	CTCGAG	1 cut(s)	1111
SmiMI	CAYNNNNRTG	3 cut(s)	552, 720, 1158
SmlI	CTYRAG	3 cut(s)	109, 821, 1111
SmoI	CTYRAG	3 cut(s)	109, 821, 1111
SnaBI	TACGTA	1 cut(s)	310
Sse9I	AATT	7 cut(s)	330, 688, 1636, 1766, 1898, 2136, 2165
SsiI	CCGC	2 cut(s)	156, 395
SspI	AATATT	1 cut(s)	1390
SspMI	CTAG	1 cut(s)	1496
StyD4I	CCNGG	6 cut(s)	566, 664, 1289, 1489, 1598, 1798
StyI	CCWWGG	1 cut(s)	1728
TaaI	ACNGT	5 cut(s)	496, 661, 799, 1643, 2000
TaiI	ACGT	2 cut(s)	312, 1703
TaqI	TCGA	4 cut(s)	617, 1052, 1112, 1276
TasI	AATT	7 cut(s)	330, 688, 1636, 1766, 1898, 2136, 2165
TatI	WGTACW	2 cut(s)	1627, 1948
TfiI	GAWTC	6 cut(s)	32, 47, 1311, 1446, 1759, 2157
Tru1I	TTAA	7 cut(s)	591, 822, 830, 1107, 1466, 1914, 2064
Tru9I	TTAA	7 cut(s)	591, 822, 830, 1107, 1466, 1914, 2064
TscAI	CASTG	8 cut(s)	499, 523, 548, 664, 770, 904, 951, 2005
TseFI	GTSAC	2 cut(s)	317, 2119
TseI	GCWGC	7 cut(s)	86, 194, 1004, 1244, 1367, 1943, 2096
Tsp45I	GTSAC	2 cut(s)	317, 2119
TspDTI	ATGAA	7 cut(s)	492, 1080, 1098, 1484, 1694, 1899, 2045
TspGWI	ACGGA	3 cut(s)	259, 867, 988
TspRI	CASTG	8 cut(s)	499, 523, 548, 664, 770, 904, 951, 2005
Tth111I	GACNNNGTC	2 cut(s)	173, 1187
Van91I	CCANNNNNTGG	1 cut(s)	769
Vha464I	CTTAAG	1 cut(s)	821
XceI	RCATGY	6 cut(s)	613, 725, 916, 1275, 1363, 1861
XcmI	CCANNNNNNNNNTGG	3 cut(s)	367, 1325, 2171
XhoI	CTCGAG	1 cut(s)	1111
XmiI	GTMKAC	1 cut(s)	1703
XmnI	GAANNNNTTC	1 cut(s)	1071
XspI	CTAG	1 cut(s)	1496
ZrmI	AGTACT	1 cut(s)	1950
Zsp2I	ATGCAT	2 cut(s)	1039, 1863

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.