Pentatricopeptide repeat-containing protein
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT5G39680 |
| fragaria_vesca | FvH4_6g48230 |
| malus_domestica | MD09G1052800.v1.1 |
| prunus_persica | Prupe.3G265900_v2.0.a1 |
| pyrus_communis | pycom111g04400 |
| rosa_chinensis | RchiOBHm_Chr2g0167741 |
| rosa_laevigata | RLG00000021750 |
| rosa_multiflora | Rmu_sc0002143.1_g000004 |
| rosa_roxburghii | Rroxscaffold_2G00083290 |
| rosa_rugosa | Rorug02G0531800 |
| rosa_samantha | Rh2AG600700 Rh2BG611300 Rh2CG581600 Rh2DG623800 |
| rosa_wichuraiana | Rw2G049860 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AarI | CACCTGC | 1 cut(s) | 42 |
| Acc36I | ACCTGC | 1 cut(s) | 42 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 1650 |
| AccII | CGCG | 1 cut(s) | 883 |
| AccIII | TCCGGA | 1 cut(s) | 1671 |
| AciI | CCGC | 6 cut(s) | 66, 883, 915, 1007, 1140, 1856 |
| AclWI | GGATC | 2 cut(s) | 1586, 1599 |
| AcoI | YGGCCR | 1 cut(s) | 912 |
| AcuI | CTGAAG | 2 cut(s) | 1422, 1935 |
| AfaI | GTAC | 4 cut(s) | 218, 295, 935, 1539 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 1233, 1644, 1650 |
| AflII | CTTAAG | 2 cut(s) | 121, 731 |
| AflIII | ACRYGT | 3 cut(s) | 1125, 1257, 2130 |
| AjiI | CACGTC | 1 cut(s) | 1258 |
| AjnI | CCWGG | 4 cut(s) | 1199, 1508, 1643, 1708 |
| AleI | CACNNNNGTG | 1 cut(s) | 1965 |
| AluBI | AGCT | 8 cut(s) | 16, 91, 107, 730, 1375, 1463, 1719, 1918 |
| AluI | AGCT | 8 cut(s) | 16, 91, 107, 730, 1375, 1463, 1719, 1918 |
| Alw21I | GWGCWC | 4 cut(s) | 727, 762, 1333, 1413 |
| Alw26I | GTCTC | 3 cut(s) | 736, 898, 2099 |
| Alw44I | GTGCAC | 1 cut(s) | 758 |
| AlwI | GGATC | 2 cut(s) | 1586, 1599 |
| Aor13HI | TCCGGA | 1 cut(s) | 1671 |
| AoxI | GGCC | 3 cut(s) | 715, 912, 1641 |
| ApaLI | GTGCAC | 1 cut(s) | 758 |
| ApeKI | GCWGC | 4 cut(s) | 1154, 1277, 1432, 1853 |
| ArsI | GACNNNNNNTTYG | 4 cut(s) | 346, 378, 1083, 1115 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 981 |
| AspLEI | GCGC | 1 cut(s) | 1960 |
| AsuC2I | CCSGG | 1 cut(s) | 576 |
| AsuHPI | GGTGA | 5 cut(s) | 23, 683, 697, 2053, 2149 |
| AsuII | TTCGAA | 1 cut(s) | 22 |
| AsuNHI | GCTAGC | 1 cut(s) | 1918 |
| AxyI | CCTNAGG | 1 cut(s) | 1982 |
| BaeGI | GKGCMC | 2 cut(s) | 247, 762 |
| BamHI | GGATCC | 1 cut(s) | 1591 |
| BanII | GRGCYC | 1 cut(s) | 1239 |
| BbsI | GAAGAC | 2 cut(s) | 84, 782 |
| Bbv12I | GWGCWC | 4 cut(s) | 727, 762, 1333, 1413 |
| BbvI | GCAGC | 4 cut(s) | 1166, 1289, 1419, 1840 |
| BccI | CCATC | 6 cut(s) | 156, 535, 658, 863, 1649, 2079 |
| BceAI | ACGGC | 2 cut(s) | 927, 1567 |
| BciT130I | CCWGG | 4 cut(s) | 1201, 1510, 1645, 1710 |
| BclI | TGATCA | 2 cut(s) | 229, 1119 |
| BcnI | CCSGG | 1 cut(s) | 576 |
| BcoDI | GTCTC | 3 cut(s) | 736, 898, 2099 |
| BfaI | CTAG | 5 cut(s) | 1068, 1253, 1454, 1782, 1919 |
| BfmI | CTRYAG | 2 cut(s) | 903, 1485 |
| BfrI | CTTAAG | 2 cut(s) | 121, 731 |
| BfuAI | ACCTGC | 1 cut(s) | 42 |
| BglII | AGATCT | 2 cut(s) | 1054, 1442 |
| BisI | GCNGC | 5 cut(s) | 915, 1155, 1278, 1433, 1854 |
| BlpI | GCTNAGC | 2 cut(s) | 726, 1436 |
| BlsI | GCNGC | 5 cut(s) | 916, 1156, 1279, 1434, 1855 |
| Bme1390I | CCNGG | 5 cut(s) | 576, 1201, 1510, 1645, 1710 |
| BmgBI | CACGTC | 1 cut(s) | 1258 |
| BmiI | GGNNCC | 2 cut(s) | 1593, 2090 |
| BmrFI | CCNGG | 5 cut(s) | 576, 1201, 1510, 1645, 1710 |
| BmrI | ACTGGG | 1 cut(s) | 755 |
| BmtI | GCTAGC | 1 cut(s) | 1922 |
| BmuI | ACTGGG | 1 cut(s) | 755 |
| BoxI | GACNNNNGTC | 1 cut(s) | 905 |
| BpiI | GAAGAC | 2 cut(s) | 84, 782 |
| BpmI | CTGGAG | 2 cut(s) | 1531, 1731 |
| Bpu10I | CCTNAGC | 1 cut(s) | 1555 |
| Bpu1102I | GCTNAGC | 2 cut(s) | 726, 1436 |
| Bpu14I | TTCGAA | 1 cut(s) | 22 |
| BpuEI | CTTGAG | 2 cut(s) | 223, 760 |
| BpuMI | CCSGG | 1 cut(s) | 576 |
| BsaJI | CCNNGG | 1 cut(s) | 1638 |
| BsaWI | WCCGGW | 1 cut(s) | 1671 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 1233, 1644, 1650 |
| Bse1I | ACTGG | 1 cut(s) | 750 |
| Bse21I | CCTNAGG | 1 cut(s) | 1982 |
| Bse3DI | GCAATG | 3 cut(s) | 651, 1215, 1848 |
| BseAI | TCCGGA | 1 cut(s) | 1671 |
| BseBI | CCWGG | 4 cut(s) | 1201, 1510, 1645, 1710 |
| BseDI | CCNNGG | 1 cut(s) | 1638 |
| BseGI | GGATG | 2 cut(s) | 1660, 1882 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 1233, 1644, 1650 |
| BseMI | GCAATG | 3 cut(s) | 651, 1215, 1848 |
| BseMII | CTCAG | 4 cut(s) | 117, 740, 1455, 1996 |
| BseNI | ACTGG | 1 cut(s) | 750 |
| BseSI | GKGCMC | 2 cut(s) | 247, 762 |
| BseX3I | CGGCCG | 1 cut(s) | 912 |
| BseXI | GCAGC | 4 cut(s) | 1166, 1289, 1419, 1840 |
| BseYI | CCCAGC | 1 cut(s) | 305 |
| BsgI | GTGCAG | 3 cut(s) | 536, 1047, 1367 |
| Bsh1236I | CGCG | 1 cut(s) | 883 |
| Bsh1285I | CGRYCG | 1 cut(s) | 915 |
| BshFI | GGCC | 3 cut(s) | 717, 914, 1643 |
| BsiEI | CGRYCG | 1 cut(s) | 915 |
| BsiHKAI | GWGCWC | 4 cut(s) | 727, 762, 1333, 1413 |
| BsiSI | CCGG | 2 cut(s) | 575, 1672 |
| BslFI | GGGAC | 2 cut(s) | 364, 1511 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 1233, 1644, 1650 |
| BsmAI | GTCTC | 3 cut(s) | 736, 898, 2099 |
| BsmFI | GGGAC | 2 cut(s) | 364, 1511 |
| BsmI | GAATGC | 4 cut(s) | 511, 856, 1117, 1210 |
| BsnI | GGCC | 3 cut(s) | 717, 914, 1643 |
| Bsp119I | TTCGAA | 1 cut(s) | 22 |
| Bsp1286I | GDGCHC | 6 cut(s) | 247, 727, 762, 1239, 1333, 1413 |
| Bsp13I | TCCGGA | 1 cut(s) | 1671 |
| Bsp1407I | TGTACA | 1 cut(s) | 1537 |
| Bsp143I | GATC | 6 cut(s) | 229, 1054, 1119, 1442, 1591, 1815 |
| Bsp1720I | GCTNAGC | 2 cut(s) | 726, 1436 |
| BspACI | CCGC | 6 cut(s) | 66, 883, 915, 1007, 1140, 1856 |
| BspANI | GGCC | 3 cut(s) | 717, 914, 1643 |
| BspCNI | CTCAG | 4 cut(s) | 116, 739, 1456, 1995 |
| BspEI | TCCGGA | 1 cut(s) | 1671 |
| BspFNI | CGCG | 1 cut(s) | 883 |
| BspHI | TCATGA | 2 cut(s) | 1264, 1938 |
| BspLI | GGNNCC | 2 cut(s) | 1593, 2090 |
| BspMAI | CTGCAG | 2 cut(s) | 907, 1489 |
| BspMI | ACCTGC | 1 cut(s) | 42 |
| BspOI | GCTAGC | 1 cut(s) | 1922 |
| BspPI | GGATC | 2 cut(s) | 1586, 1599 |
| BspT104I | TTCGAA | 1 cut(s) | 22 |
| BspTI | CTTAAG | 2 cut(s) | 121, 731 |
| BsrDI | GCAATG | 3 cut(s) | 651, 1215, 1848 |
| BsrGI | TGTACA | 1 cut(s) | 1537 |
| BsrI | ACTGG | 1 cut(s) | 750 |
| BssECI | CCNNGG | 1 cut(s) | 1638 |
| BssMI | GATC | 6 cut(s) | 229, 1054, 1119, 1442, 1591, 1815 |
| BssT1I | CCWWGG | 1 cut(s) | 1638 |
| Bst2UI | CCWGG | 4 cut(s) | 1201, 1510, 1645, 1710 |
| Bst4CI | ACNGT | 5 cut(s) | 10, 406, 428, 571, 1386 |
| Bst6I | CTCTTC | 1 cut(s) | 435 |
| BstAFI | CTTAAG | 2 cut(s) | 121, 731 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 143 |
| BstAUI | TGTACA | 1 cut(s) | 1537 |
| BstBI | TTCGAA | 1 cut(s) | 22 |
| BstC8I | GCNNGC | 2 cut(s) | 875, 1920 |
| BstDEI | CTNAG | 9 cut(s) | 103, 726, 803, 1043, 1436, 1464, 1555, 1898, 1982 |
| BstF5I | GGATG | 2 cut(s) | 1660, 1882 |
| BstFNI | CGCG | 1 cut(s) | 883 |
| BstHHI | GCGC | 1 cut(s) | 1960 |
| BstKTI | GATC | 6 cut(s) | 232, 1057, 1122, 1445, 1594, 1818 |
| BstMAI | GTCTC | 3 cut(s) | 736, 898, 2099 |
| BstMBI | GATC | 6 cut(s) | 229, 1054, 1119, 1442, 1591, 1815 |
| BstMCI | CGRYCG | 1 cut(s) | 915 |
| BstMWI | GCNNNNNNNGC | 3 cut(s) | 143, 911, 1283 |
| BstNI | CCWGG | 4 cut(s) | 1201, 1510, 1645, 1710 |
| BstNSI | RCATGY | 4 cut(s) | 635, 1067, 1129, 2134 |
| BstPAI | GACNNNNGTC | 1 cut(s) | 905 |
| BstSCI | CCNGG | 5 cut(s) | 574, 1199, 1508, 1643, 1708 |
| BstSFI | CTRYAG | 2 cut(s) | 903, 1485 |
| BstSLI | GKGCMC | 2 cut(s) | 247, 762 |
| BstUI | CGCG | 1 cut(s) | 883 |
| BstV1I | GCAGC | 4 cut(s) | 1166, 1289, 1419, 1840 |
| BstV2I | GAAGAC | 2 cut(s) | 84, 782 |
| BstX2I | RGATCY | 3 cut(s) | 1054, 1442, 1591 |
| BstYI | RGATCY | 3 cut(s) | 1054, 1442, 1591 |
| BstZI | CGGCCG | 1 cut(s) | 912 |
| Bsu36I | CCTNAGG | 1 cut(s) | 1982 |
| BsuRI | GGCC | 3 cut(s) | 717, 914, 1643 |
| BtrI | CACGTC | 1 cut(s) | 1258 |
| BtsCI | GGATG | 2 cut(s) | 1660, 1882 |
| BtsI | GCAGTG | 3 cut(s) | 458, 491, 861 |
| BtsIMutI | CAGTG | 5 cut(s) | 433, 458, 491, 567, 861 |
| BveI | ACCTGC | 1 cut(s) | 42 |
| Cac8I | GCNNGC | 2 cut(s) | 875, 1920 |
| CciI | TCATGA | 2 cut(s) | 1264, 1938 |
| CfoI | GCGC | 1 cut(s) | 1960 |
| Csp6I | GTAC | 4 cut(s) | 217, 294, 934, 1538 |
| CviQI | GTAC | 4 cut(s) | 217, 294, 934, 1538 |
| DdeI | CTNAG | 9 cut(s) | 103, 726, 803, 1043, 1436, 1464, 1555, 1898, 1982 |
| DpnI | GATC | 6 cut(s) | 231, 1056, 1121, 1444, 1593, 1817 |
| DpnII | GATC | 6 cut(s) | 229, 1054, 1119, 1442, 1591, 1815 |
| DraI | TTTAAA | 1 cut(s) | 609 |
| EaeI | YGGCCR | 1 cut(s) | 912 |
| EagI | CGGCCG | 1 cut(s) | 912 |
| Eam1104I | CTCTTC | 1 cut(s) | 435 |
| EarI | CTCTTC | 1 cut(s) | 435 |
| EclXI | CGGCCG | 1 cut(s) | 912 |
| Eco130I | CCWWGG | 1 cut(s) | 1638 |
| Eco24I | GRGCYC | 1 cut(s) | 1239 |
| Eco32I | GATATC | 1 cut(s) | 1215 |
| Eco52I | CGGCCG | 1 cut(s) | 912 |
| Eco57I | CTGAAG | 2 cut(s) | 1422, 1935 |
| Eco81I | CCTNAGG | 1 cut(s) | 1982 |
| EcoRII | CCWGG | 4 cut(s) | 1199, 1508, 1643, 1708 |
| EcoRV | GATATC | 1 cut(s) | 1215 |
| EcoT14I | CCWWGG | 1 cut(s) | 1638 |
| EcoT38I | GRGCYC | 1 cut(s) | 1239 |
| ErhI | CCWWGG | 1 cut(s) | 1638 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 1881, 1913 |
| FaqI | GGGAC | 2 cut(s) | 364, 1511 |
| FauI | CCCGC | 1 cut(s) | 73 |
| FauNDI | CATATG | 3 cut(s) | 700, 1335, 1930 |
| FbaI | TGATCA | 2 cut(s) | 229, 1119 |
| Fnu4HI | GCNGC | 5 cut(s) | 915, 1155, 1278, 1433, 1854 |
| FokI | GGATG | 2 cut(s) | 1667, 1889 |
| FriOI | GRGCYC | 1 cut(s) | 1239 |
| Fsp4HI | GCNGC | 5 cut(s) | 915, 1155, 1278, 1433, 1854 |
| FspBI | CTAG | 5 cut(s) | 1068, 1253, 1454, 1782, 1919 |
| GlaI | GCGC | 1 cut(s) | 1959 |
| GluI | GCNGC | 5 cut(s) | 915, 1155, 1278, 1433, 1854 |
| GsaI | CCCAGC | 1 cut(s) | 309 |
| GsuI | CTGGAG | 2 cut(s) | 1531, 1731 |
| HaeIII | GGCC | 3 cut(s) | 717, 914, 1643 |
| HapII | CCGG | 2 cut(s) | 575, 1672 |
| HhaI | GCGC | 1 cut(s) | 1960 |
| Hin6I | GCGC | 1 cut(s) | 1958 |
| HinP1I | GCGC | 1 cut(s) | 1958 |
| HinfI | GANTC | 7 cut(s) | 176, 260, 1180, 1190, 1778, 1935, 2067 |
| HpaII | CCGG | 2 cut(s) | 575, 1672 |
| HphI | GGTGA | 5 cut(s) | 23, 683, 697, 2053, 2149 |
| Hpy166II | GTNNAC | 2 cut(s) | 760, 2125 |
| Hpy188I | TCNGA | 5 cut(s) | 424, 538, 1759, 1788, 1954 |
| Hpy8I | GTNNAC | 2 cut(s) | 760, 2125 |
| HpyAV | CCTTC | 5 cut(s) | 466, 539, 1315, 1346, 1959 |
| HpyCH4III | ACNGT | 5 cut(s) | 10, 406, 428, 571, 1386 |
| HpyCH4IV | ACGT | 1 cut(s) | 1257 |
| HpyF10VI | GCNNNNNNNGC | 3 cut(s) | 143, 911, 1283 |
| HpyF3I | CTNAG | 9 cut(s) | 103, 726, 803, 1043, 1436, 1464, 1555, 1898, 1982 |
| HpySE526I | ACGT | 1 cut(s) | 1257 |
| HspAI | GCGC | 1 cut(s) | 1958 |
| Kpn2I | TCCGGA | 1 cut(s) | 1671 |
| Ksp22I | TGATCA | 2 cut(s) | 229, 1119 |
| Kzo9I | GATC | 6 cut(s) | 229, 1054, 1119, 1442, 1591, 1815 |
| LmnI | GCTCC | 4 cut(s) | 96, 1283, 1408, 2088 |
| Lsp1109I | GCAGC | 4 cut(s) | 1166, 1289, 1419, 1840 |
| MaeI | CTAG | 5 cut(s) | 1068, 1253, 1454, 1782, 1919 |
| MaeII | ACGT | 1 cut(s) | 1257 |
| MaeIII | GTNAC | 8 cut(s) | 694, 703, 907, 1195, 1547, 2029, 2133, 2155 |
| MalI | GATC | 6 cut(s) | 231, 1056, 1121, 1444, 1593, 1817 |
| MboI | GATC | 6 cut(s) | 229, 1054, 1119, 1442, 1591, 1815 |
| MboII | GAAGA | 8 cut(s) | 89, 405, 452, 787, 989, 1571, 1746, 1901 |
| MflI | RGATCY | 3 cut(s) | 1054, 1442, 1591 |
| MhlI | GDGCHC | 6 cut(s) | 247, 727, 762, 1239, 1333, 1413 |
| MluCI | AATT | 7 cut(s) | 84, 138, 598, 1676, 1808, 2046, 2075 |
| MlyI | GAGTC | 3 cut(s) | 1174, 1787, 1929 |
| MmeI | TCCRAC | 1 cut(s) | 186 |
| MnlI | CCTC | 9 cut(s) | 436, 549, 934, 1470, 1567, 1641, 1677, 1867, 1991 |
| MroI | TCCGGA | 1 cut(s) | 1671 |
| MroXI | GAANNNNTTC | 1 cut(s) | 981 |
| MseI | TTAA | 9 cut(s) | 87, 122, 299, 501, 608, 732, 1017, 1824, 1974 |
| MslI | CAYNNNNRTG | 8 cut(s) | 276, 462, 495, 630, 821, 1175, 1419, 1965 |
| MspA1I | CMGCKG | 1 cut(s) | 107 |
| MspCI | CTTAAG | 2 cut(s) | 121, 731 |
| MspI | CCGG | 2 cut(s) | 575, 1672 |
| MspR9I | CCNGG | 5 cut(s) | 576, 1201, 1510, 1645, 1710 |
| Mva1269I | GAATGC | 4 cut(s) | 511, 856, 1117, 1210 |
| MvaI | CCWGG | 4 cut(s) | 1201, 1510, 1645, 1710 |
| MvnI | CGCG | 1 cut(s) | 883 |
| MwoI | GCNNNNNNNGC | 3 cut(s) | 143, 911, 1283 |
| NciI | CCSGG | 1 cut(s) | 576 |
| NdeI | CATATG | 3 cut(s) | 700, 1335, 1930 |
| NdeII | GATC | 6 cut(s) | 229, 1054, 1119, 1442, 1591, 1815 |
| NheI | GCTAGC | 1 cut(s) | 1918 |
| NlaIV | GGNNCC | 2 cut(s) | 1593, 2090 |
| NmuCI | GTSAC | 5 cut(s) | 703, 907, 1195, 2029, 2155 |
| NspI | RCATGY | 4 cut(s) | 635, 1067, 1129, 2134 |
| NspV | TTCGAA | 1 cut(s) | 22 |
| OliI | CACNNNNGTG | 1 cut(s) | 1965 |
| PagI | TCATGA | 2 cut(s) | 1264, 1938 |
| PaqCI | CACCTGC | 1 cut(s) | 42 |
| PciI | ACATGT | 2 cut(s) | 1125, 2130 |
| PctI | GAATGC | 4 cut(s) | 511, 856, 1117, 1210 |
| PdmI | GAANNNNTTC | 1 cut(s) | 981 |
| PfeI | GAWTC | 4 cut(s) | 176, 260, 1190, 2067 |
| PflFI | GACNNNGTC | 1 cut(s) | 747 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 1650 |
| PkrI | GCNGC | 5 cut(s) | 916, 1156, 1279, 1434, 1855 |
| PleI | GAGTC | 3 cut(s) | 1174, 1786, 1929 |
| PpsI | GAGTC | 3 cut(s) | 1174, 1786, 1929 |
| PscI | ACATGT | 2 cut(s) | 1125, 2130 |
| PshAI | GACNNNNGTC | 1 cut(s) | 905 |
| Psp6I | CCWGG | 4 cut(s) | 1199, 1508, 1643, 1708 |
| PspFI | CCCAGC | 1 cut(s) | 305 |
| PspGI | CCWGG | 4 cut(s) | 1199, 1508, 1643, 1708 |
| PspN4I | GGNNCC | 2 cut(s) | 1593, 2090 |
| PsrI | GAACNNNNNNTAC | 2 cut(s) | 1560, 1592 |
| PstI | CTGCAG | 2 cut(s) | 907, 1489 |
| PsuI | RGATCY | 3 cut(s) | 1054, 1442, 1591 |
| PsyI | GACNNNGTC | 1 cut(s) | 747 |
| PvuII | CAGCTG | 1 cut(s) | 107 |
| RsaI | GTAC | 4 cut(s) | 218, 295, 935, 1539 |
| RsaNI | GTAC | 4 cut(s) | 217, 294, 934, 1538 |
| RseI | CAYNNNNRTG | 8 cut(s) | 276, 462, 495, 630, 821, 1175, 1419, 1965 |
| SaqAI | TTAA | 9 cut(s) | 87, 122, 299, 501, 608, 732, 1017, 1824, 1974 |
| SatI | GCNGC | 5 cut(s) | 915, 1155, 1278, 1433, 1854 |
| Sau3AI | GATC | 6 cut(s) | 229, 1054, 1119, 1442, 1591, 1815 |
| SchI | GAGTC | 3 cut(s) | 1174, 1787, 1929 |
| ScrFI | CCNGG | 5 cut(s) | 576, 1201, 1510, 1645, 1710 |
| SduI | GDGCHC | 6 cut(s) | 247, 727, 762, 1239, 1333, 1413 |
| SfcI | CTRYAG | 2 cut(s) | 903, 1485 |
| SfuI | TTCGAA | 1 cut(s) | 22 |
| SmiMI | CAYNNNNRTG | 8 cut(s) | 276, 462, 495, 630, 821, 1175, 1419, 1965 |
| SmlI | CTYRAG | 4 cut(s) | 121, 238, 731, 739 |
| SmoI | CTYRAG | 4 cut(s) | 121, 238, 731, 739 |
| Sse9I | AATT | 7 cut(s) | 84, 138, 598, 1676, 1808, 2046, 2075 |
| SsiI | CCGC | 6 cut(s) | 66, 883, 915, 1007, 1140, 1856 |
| SspMI | CTAG | 5 cut(s) | 1068, 1253, 1454, 1782, 1919 |
| StyD4I | CCNGG | 5 cut(s) | 574, 1199, 1508, 1643, 1708 |
| StyI | CCWWGG | 1 cut(s) | 1638 |
| TaaI | ACNGT | 5 cut(s) | 10, 406, 428, 571, 1386 |
| TaiI | ACGT | 1 cut(s) | 1260 |
| TaqI | TCGA | 4 cut(s) | 22, 527, 1186, 1818 |
| TasI | AATT | 7 cut(s) | 84, 138, 598, 1676, 1808, 2046, 2075 |
| TatI | WGTACW | 2 cut(s) | 216, 1537 |
| TauI | GCSGC | 1 cut(s) | 917 |
| TfiI | GAWTC | 4 cut(s) | 176, 260, 1190, 2067 |
| Tru1I | TTAA | 9 cut(s) | 87, 122, 299, 501, 608, 732, 1017, 1824, 1974 |
| Tru9I | TTAA | 9 cut(s) | 87, 122, 299, 501, 608, 732, 1017, 1824, 1974 |
| TscAI | CASTG | 5 cut(s) | 433, 458, 491, 574, 861 |
| TseFI | GTSAC | 5 cut(s) | 703, 907, 1195, 2029, 2155 |
| TseI | GCWGC | 4 cut(s) | 1154, 1277, 1432, 1853 |
| Tsp45I | GTSAC | 5 cut(s) | 703, 907, 1195, 2029, 2155 |
| TspRI | CASTG | 5 cut(s) | 433, 458, 491, 574, 861 |
| Tth111I | GACNNNGTC | 1 cut(s) | 747 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 1650 |
| Vha464I | CTTAAG | 2 cut(s) | 121, 731 |
| VneI | GTGCAC | 1 cut(s) | 758 |
| XceI | RCATGY | 4 cut(s) | 635, 1067, 1129, 2134 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 1103 |
| XmnI | GAANNNNTTC | 1 cut(s) | 981 |
| XspI | CTAG | 5 cut(s) | 1068, 1253, 1454, 1782, 1919 |