Basic Information

Type: Sequence Only

Biological Identity

Species

rosa_samantha

Chromosome

Unknown

Orthogroup ID

OG0016070

Physical Location & Seq

Genomic Coordinates Reverse (-)

0 .. 0

Gene Structure 1 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2CG581600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2115 bp

ATGCCCACCGTAAAGCTCTTTCGAAACTCTCACCTGCCCTTTCTTTTCAAACCAAAGCAAACACCCGCCACTTTTGAAGACCCAATTAAGCTCCTGAAAAAGTCAGCTGATACAAAGAACTTGAGACTTGGCAAAGCAATTCATGCCCATCTCATCCTTTCCAACCAAACCCCTGAATCCCTTGACATATTCCACACCAACTCTCTCATCAACTTGTACTCAAAATGTGATCAAATCTCAAGTGCCCACCACCTGTTTGATTCTATGCCCCACAGAAATGTGGTTTCTTGGAGTACCTTAATGGCTGGGTATCTGCATAAAGGGTGTGCCTTTGAAGTTCTTGGCTTGTTCAAGACTATGGTTTCGGTGGAAAATCTGTCCCCCAATGAGTATGTTTTCGCAACTGTTGTTTCTTCTTGTTCGGACAGTGGGAGAGTTGAAGAGGGAAAGCAGTGTCATGGGTATGTGTTGAAGGCTGGATTGCAGTGTCATCAGTATGTTAAGAATGCACTTGTGCAGATGTATTCGAGTTGTTCAGAGATGGAAGGGGCTATGAGGGTTTTGAACACAGTGCCGGGTTATGATATTTTTTCGTGTAATTCGGTTTTAAATGGGCTATTGGAACATGGGCATGTAGGGGAAGCAATGGAGATTTTGGGTATGATGGTAGGTGAGTGCATGGCTTGGGATAGTGTTACATATGTCACCATTTTTGGCCTTTGTGCTCAGCTTAAGGACTTGAGACTGGGTCTGCAAGTGCACAGCAGAATGATGAAGACTGATATAGAGTGTGATGTGTTTCTTAGTAGTGCAATCATTGATATGTATGGGAAATGTGGCAAGGTTTGGAATGCAGTGAAAATTTTTGATGGCTTGCAAACGCGGAACATAGTCTCATGGACTGCAGTCACGGCCGCTTATTTCCAAAATGGGTACTTTGAGGAAGCATTAGGTGTATTGTCAAAAATGGAACTTGAAGATGTTCGTCCAAATGAATATAGTTTTGCGGTCTTGCTTAACTCATGTGCAGGGTTGTCTGCTCTAAGACATGGAGATCTATTACATGCTAGAGTTGAGAAGTCAGGTTTCAAATACCATGTCATTGTTGGGAATGCTTTGATCAACATGTATTCCAAGTGCGGAAACATTCAAGCAGCAAATGAATTGTTCATGGATATGACTCATCGAGATTCTGTGACCTGGAATGCAATGATATCTGGGTTTTCCCATCATGGGCTCGGTAAGGAAGCACTAGACGTGTTTCATGATATGTTGGCAGCAGGAGCGTGTCCTAACCACATTACCTTCGTTGGTGTTCTCTTGGCTTGTGCTCATATGGGCTTGGTGCAGGAAGGGTTCTACTATTTGAACCAGCTAATGAAACAGTTTGGCATTGAACCTGAAGTGGAGCACCATACCTGTGTTGTGGGGCTCCTTAGCAGATCTGGACAACTAGATGAAGCTGAGAGATATATGAGGACTACTGCAGTCAAGTGGGACATTGTTGCCTGGAGAACCTTGCTCAATGCTTGTCATGTACATAGAAGTTACGGCTTAGGTAAGCGAGTAGCAGAGGTTCTTCTCCAAATGGATCCTAATGATATGGGAACATATATACTATTGTCAAATATGTATGCCAAGGCCAGGAGGTGGGATGGAGTTGTGAATATCCGGAAATTGACAAGGGATAGAAACATCAAGAAAGAGCCTGGAGTGAGCTGGATAGAGATAAGAAATACGACCCATATCTTTTCTTCTGATGATAACACACACCCAGAGTCTAGTCAGATACATGAAAAGGTTAGGGAATTGTTGATCAAGATTAAACCATTGGGATATGTGCCAGACATTGCTGCGGTGCTACATGATGTGGAGGATGAGCAGAAAGAAGATTACCTTAGTTATCACAGCGAGAAGCTAGCAATAGCATATGGACTCATGAAAACACCTTCAGAAGCGCACATTCGTGTCATTAAGAACCTCAGGATATGTGATGATTGCCATGTTGCTGTGAAACTTATTTCAAAGGTCACAAACAGGGTGATAATTGTTAGAGATACCAACAGATTCCATCAATTTCAAGACGGGAGGTGCTCTTGTGCAGATTATTGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DYW_deaminase PPR PPR_2

Protein Analysis

704

Amino Acids

79.29

Weight (kDa)

6.81

Isoelectric Point (pI)

40.41

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_2	PF13041	195 - 241	4.8e-06	PPR repeat family
PPR_2	PF13041	295 - 343	4.6e-09	PPR repeat family
PPR_2	PF13041	397 - 444	1.1e-10	PPR repeat family
PPR	PF01535	399 - 428	4e-08	PPR repeat
E_motif	PF20431	519 - 576	3.6e-17	E motif
DYW_deaminase	PF14432	612 - 704	1.2e-40	DYW family of nucleic acid deaminases

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Orthologous Genes (Group: OG0016070)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G39680
fragaria_vesca	FvH4_6g48230
malus_domestica	MD09G1052800.v1.1
prunus_persica	Prupe.3G265900_v2.0.a1
pyrus_communis	pycom111g04400
rosa_chinensis	RchiOBHm_Chr2g0167741
rosa_laevigata	RLG00000021750
rosa_multiflora	Rmu_sc0002143.1_g000004
rosa_roxburghii	Rroxscaffold_2G00083290
rosa_rugosa	Rorug02G0531800
rosa_samantha	Rh2AG600700 Rh2BG611300 Rh2CG581600 Rh2DG623800
rosa_wichuraiana	Rw2G049860

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	42
Acc36I	ACCTGC	1 cut(s)	42
AccB7I	CCANNNNNTGG	1 cut(s)	1650
AccII	CGCG	1 cut(s)	883
AccIII	TCCGGA	1 cut(s)	1671
AciI	CCGC	6 cut(s)	66, 883, 915, 1007, 1140, 1856
AclWI	GGATC	2 cut(s)	1586, 1599
AcoI	YGGCCR	1 cut(s)	912
AcsI	RAATTY	1 cut(s)	861
AcuI	CTGAAG	2 cut(s)	1422, 1935
AfaI	GTAC	4 cut(s)	218, 295, 935, 1539
AfiI	CCNNNNNNNGG	3 cut(s)	1233, 1644, 1650
AflII	CTTAAG	1 cut(s)	731
AflIII	ACRYGT	2 cut(s)	1125, 1257
AjiI	CACGTC	1 cut(s)	1258
AjnI	CCWGG	4 cut(s)	1199, 1508, 1643, 1708
AleI	CACNNNNGTG	1 cut(s)	1965
AluBI	AGCT	8 cut(s)	16, 91, 107, 730, 1375, 1463, 1719, 1918
AluI	AGCT	8 cut(s)	16, 91, 107, 730, 1375, 1463, 1719, 1918
Alw21I	GWGCWC	5 cut(s)	727, 762, 1333, 1413, 2096
Alw26I	GTCTC	3 cut(s)	118, 736, 898
Alw44I	GTGCAC	1 cut(s)	758
AlwI	GGATC	2 cut(s)	1586, 1599
Aor13HI	TCCGGA	1 cut(s)	1671
AoxI	GGCC	3 cut(s)	715, 912, 1641
ApaLI	GTGCAC	1 cut(s)	758
ApeKI	GCWGC	3 cut(s)	1154, 1277, 1853
ApoI	RAATTY	1 cut(s)	861
ArsI	GACNNNNNNTTYG	4 cut(s)	346, 378, 1083, 1115
Asp700I	GAANNNNTTC	1 cut(s)	981
AspLEI	GCGC	1 cut(s)	1960
AsuC2I	CCSGG	1 cut(s)	576
AsuHPI	GGTGA	4 cut(s)	23, 683, 697, 2053
AsuII	TTCGAA	1 cut(s)	22
AsuNHI	GCTAGC	1 cut(s)	1918
AxyI	CCTNAGG	1 cut(s)	1982
BaeGI	GKGCMC	2 cut(s)	247, 762
BamHI	GGATCC	1 cut(s)	1591
BanII	GRGCYC	2 cut(s)	1239, 1434
BbsI	GAAGAC	2 cut(s)	84, 782
Bbv12I	GWGCWC	5 cut(s)	727, 762, 1333, 1413, 2096
BbvI	GCAGC	3 cut(s)	1166, 1289, 1840
BccI	CCATC	7 cut(s)	156, 535, 658, 863, 1236, 1649, 2079
BceAI	ACGGC	2 cut(s)	927, 1567
BciT130I	CCWGG	4 cut(s)	1201, 1510, 1645, 1710
BclI	TGATCA	3 cut(s)	229, 1119, 1815
BcnI	CCSGG	1 cut(s)	576
BcoDI	GTCTC	3 cut(s)	118, 736, 898
BfaI	CTAG	5 cut(s)	1068, 1253, 1454, 1782, 1919
BfmI	CTRYAG	2 cut(s)	903, 1485
BfrI	CTTAAG	1 cut(s)	731
BfuAI	ACCTGC	1 cut(s)	42
BglII	AGATCT	2 cut(s)	1054, 1442
BisI	GCNGC	4 cut(s)	915, 1155, 1278, 1854
BlpI	GCTNAGC	1 cut(s)	726
BlsI	GCNGC	4 cut(s)	916, 1156, 1279, 1855
Bme1390I	CCNGG	5 cut(s)	576, 1201, 1510, 1645, 1710
BmgBI	CACGTC	1 cut(s)	1258
BmiI	GGNNCC	2 cut(s)	1433, 1593
BmrFI	CCNGG	5 cut(s)	576, 1201, 1510, 1645, 1710
BmrI	ACTGGG	1 cut(s)	755
BmtI	GCTAGC	1 cut(s)	1922
BmuI	ACTGGG	1 cut(s)	755
BoxI	GACNNNNGTC	1 cut(s)	905
BpiI	GAAGAC	2 cut(s)	84, 782
BpmI	CTGGAG	2 cut(s)	1531, 1731
Bpu10I	CCTNAGC	2 cut(s)	1436, 1555
Bpu1102I	GCTNAGC	1 cut(s)	726
Bpu14I	TTCGAA	1 cut(s)	22
BpuEI	CTTGAG	3 cut(s)	142, 223, 760
BpuMI	CCSGG	1 cut(s)	576
BsaJI	CCNNGG	1 cut(s)	1638
BsaWI	WCCGGW	1 cut(s)	1671
Bsc4I	CCNNNNNNNGG	3 cut(s)	1233, 1644, 1650
Bse1I	ACTGG	1 cut(s)	750
Bse21I	CCTNAGG	1 cut(s)	1982
Bse3DI	GCAATG	3 cut(s)	651, 1215, 1848
BseAI	TCCGGA	1 cut(s)	1671
BseBI	CCWGG	4 cut(s)	1201, 1510, 1645, 1710
BseDI	CCNNGG	1 cut(s)	1638
BseGI	GGATG	3 cut(s)	153, 1660, 1882
BseLI	CCNNNNNNNGG	3 cut(s)	1233, 1644, 1650
BseMI	GCAATG	3 cut(s)	651, 1215, 1848
BseMII	CTCAG	3 cut(s)	740, 1455, 1996
BseNI	ACTGG	1 cut(s)	750
BseSI	GKGCMC	2 cut(s)	247, 762
BseX3I	CGGCCG	1 cut(s)	912
BseXI	GCAGC	3 cut(s)	1166, 1289, 1840
BseYI	CCCAGC	1 cut(s)	305
BsgI	GTGCAG	3 cut(s)	536, 1047, 1367
Bsh1236I	CGCG	1 cut(s)	883
Bsh1285I	CGRYCG	1 cut(s)	915
BshFI	GGCC	3 cut(s)	717, 914, 1643
BsiEI	CGRYCG	1 cut(s)	915
BsiHKAI	GWGCWC	5 cut(s)	727, 762, 1333, 1413, 2096
BsiSI	CCGG	2 cut(s)	575, 1672
BslFI	GGGAC	2 cut(s)	364, 1511
BslI	CCNNNNNNNGG	3 cut(s)	1233, 1644, 1650
BsmAI	GTCTC	3 cut(s)	118, 736, 898
BsmFI	GGGAC	2 cut(s)	364, 1511
BsmI	GAATGC	4 cut(s)	511, 856, 1117, 1210
BsnI	GGCC	3 cut(s)	717, 914, 1643
Bsp119I	TTCGAA	1 cut(s)	22
Bsp1286I	GDGCHC	8 cut(s)	247, 727, 762, 1239, 1333, 1413, 1434, 2096
Bsp13I	TCCGGA	1 cut(s)	1671
Bsp1407I	TGTACA	1 cut(s)	1537
Bsp143I	GATC	6 cut(s)	229, 1054, 1119, 1442, 1591, 1815
Bsp1720I	GCTNAGC	1 cut(s)	726
BspACI	CCGC	6 cut(s)	66, 883, 915, 1007, 1140, 1856
BspANI	GGCC	3 cut(s)	717, 914, 1643
BspCNI	CTCAG	3 cut(s)	739, 1456, 1995
BspEI	TCCGGA	1 cut(s)	1671
BspFNI	CGCG	1 cut(s)	883
BspHI	TCATGA	2 cut(s)	1264, 1938
BspLI	GGNNCC	2 cut(s)	1433, 1593
BspMAI	CTGCAG	2 cut(s)	907, 1489
BspMI	ACCTGC	1 cut(s)	42
BspOI	GCTAGC	1 cut(s)	1922
BspPI	GGATC	2 cut(s)	1586, 1599
BspT104I	TTCGAA	1 cut(s)	22
BspTI	CTTAAG	1 cut(s)	731
BsrDI	GCAATG	3 cut(s)	651, 1215, 1848
BsrGI	TGTACA	1 cut(s)	1537
BsrI	ACTGG	1 cut(s)	750
BssECI	CCNNGG	1 cut(s)	1638
BssMI	GATC	6 cut(s)	229, 1054, 1119, 1442, 1591, 1815
BssT1I	CCWWGG	1 cut(s)	1638
Bst2UI	CCWGG	4 cut(s)	1201, 1510, 1645, 1710
Bst4CI	ACNGT	5 cut(s)	10, 406, 428, 571, 1386
Bst6I	CTCTTC	1 cut(s)	435
BstAFI	CTTAAG	1 cut(s)	731
BstAPI	GCANNNNNTGC	1 cut(s)	143
BstAUI	TGTACA	1 cut(s)	1537
BstBI	TTCGAA	1 cut(s)	22
BstC8I	GCNNGC	2 cut(s)	875, 1920
BstDEI	CTNAG	8 cut(s)	726, 803, 1043, 1436, 1464, 1555, 1898, 1982
BstF5I	GGATG	3 cut(s)	153, 1660, 1882
BstFNI	CGCG	1 cut(s)	883
BstHHI	GCGC	1 cut(s)	1960
BstKTI	GATC	6 cut(s)	232, 1057, 1122, 1445, 1594, 1818
BstMAI	GTCTC	3 cut(s)	118, 736, 898
BstMBI	GATC	6 cut(s)	229, 1054, 1119, 1442, 1591, 1815
BstMCI	CGRYCG	1 cut(s)	915
BstMWI	GCNNNNNNNGC	3 cut(s)	143, 911, 1283
BstNI	CCWGG	4 cut(s)	1201, 1510, 1645, 1710
BstNSI	RCATGY	3 cut(s)	635, 1067, 1129
BstPAI	GACNNNNGTC	1 cut(s)	905
BstSCI	CCNGG	5 cut(s)	574, 1199, 1508, 1643, 1708
BstSFI	CTRYAG	2 cut(s)	903, 1485
BstSLI	GKGCMC	2 cut(s)	247, 762
BstUI	CGCG	1 cut(s)	883
BstV1I	GCAGC	3 cut(s)	1166, 1289, 1840
BstV2I	GAAGAC	2 cut(s)	84, 782
BstX2I	RGATCY	3 cut(s)	1054, 1442, 1591
BstYI	RGATCY	3 cut(s)	1054, 1442, 1591
BstZI	CGGCCG	1 cut(s)	912
Bsu36I	CCTNAGG	1 cut(s)	1982
BsuRI	GGCC	3 cut(s)	717, 914, 1643
BtrI	CACGTC	1 cut(s)	1258
BtsCI	GGATG	3 cut(s)	153, 1660, 1882
BtsI	GCAGTG	3 cut(s)	458, 491, 861
BtsIMutI	CAGTG	5 cut(s)	433, 458, 491, 576, 861
BveI	ACCTGC	1 cut(s)	42
Cac8I	GCNNGC	2 cut(s)	875, 1920
CciI	TCATGA	2 cut(s)	1264, 1938
CfoI	GCGC	1 cut(s)	1960
Csp6I	GTAC	4 cut(s)	217, 294, 934, 1538
CviQI	GTAC	4 cut(s)	217, 294, 934, 1538
DdeI	CTNAG	8 cut(s)	726, 803, 1043, 1436, 1464, 1555, 1898, 1982
DpnI	GATC	6 cut(s)	231, 1056, 1121, 1444, 1593, 1817
DpnII	GATC	6 cut(s)	229, 1054, 1119, 1442, 1591, 1815
DraI	TTTAAA	1 cut(s)	609
EaeI	YGGCCR	1 cut(s)	912
EagI	CGGCCG	1 cut(s)	912
Eam1104I	CTCTTC	1 cut(s)	435
EarI	CTCTTC	1 cut(s)	435
EclXI	CGGCCG	1 cut(s)	912
Eco130I	CCWWGG	1 cut(s)	1638
Eco24I	GRGCYC	2 cut(s)	1239, 1434
Eco32I	GATATC	1 cut(s)	1215
Eco52I	CGGCCG	1 cut(s)	912
Eco57I	CTGAAG	2 cut(s)	1422, 1935
Eco81I	CCTNAGG	1 cut(s)	1982
EcoRII	CCWGG	4 cut(s)	1199, 1508, 1643, 1708
EcoRV	GATATC	1 cut(s)	1215
EcoT14I	CCWWGG	1 cut(s)	1638
EcoT38I	GRGCYC	2 cut(s)	1239, 1434
ErhI	CCWWGG	1 cut(s)	1638
FalI	AAGNNNNNCTT	2 cut(s)	1881, 1913
FaqI	GGGAC	2 cut(s)	364, 1511
FauI	CCCGC	1 cut(s)	73
FauNDI	CATATG	3 cut(s)	700, 1335, 1930
FbaI	TGATCA	3 cut(s)	229, 1119, 1815
Fnu4HI	GCNGC	4 cut(s)	915, 1155, 1278, 1854
FokI	GGATG	3 cut(s)	140, 1667, 1889
FriOI	GRGCYC	2 cut(s)	1239, 1434
Fsp4HI	GCNGC	4 cut(s)	915, 1155, 1278, 1854
FspBI	CTAG	5 cut(s)	1068, 1253, 1454, 1782, 1919
GlaI	GCGC	1 cut(s)	1959
GluI	GCNGC	4 cut(s)	915, 1155, 1278, 1854
GsaI	CCCAGC	1 cut(s)	309
GsuI	CTGGAG	2 cut(s)	1531, 1731
HaeIII	GGCC	3 cut(s)	717, 914, 1643
HapII	CCGG	2 cut(s)	575, 1672
HhaI	GCGC	1 cut(s)	1960
Hin6I	GCGC	1 cut(s)	1958
HinP1I	GCGC	1 cut(s)	1958
HinfI	GANTC	7 cut(s)	176, 260, 1180, 1190, 1778, 1935, 2067
HpaII	CCGG	2 cut(s)	575, 1672
HphI	GGTGA	4 cut(s)	23, 683, 697, 2053
Hpy166II	GTNNAC	1 cut(s)	760
Hpy188I	TCNGA	5 cut(s)	424, 538, 1759, 1788, 1954
Hpy8I	GTNNAC	1 cut(s)	760
HpyAV	CCTTC	5 cut(s)	466, 539, 1315, 1346, 1959
HpyCH4III	ACNGT	5 cut(s)	10, 406, 428, 571, 1386
HpyCH4IV	ACGT	1 cut(s)	1257
HpyF10VI	GCNNNNNNNGC	3 cut(s)	143, 911, 1283
HpyF3I	CTNAG	8 cut(s)	726, 803, 1043, 1436, 1464, 1555, 1898, 1982
HpySE526I	ACGT	1 cut(s)	1257
HspAI	GCGC	1 cut(s)	1958
Kpn2I	TCCGGA	1 cut(s)	1671
Ksp22I	TGATCA	3 cut(s)	229, 1119, 1815
Kzo9I	GATC	6 cut(s)	229, 1054, 1119, 1442, 1591, 1815
LmnI	GCTCC	4 cut(s)	96, 1283, 1408, 1437
Lsp1109I	GCAGC	3 cut(s)	1166, 1289, 1840
MaeI	CTAG	5 cut(s)	1068, 1253, 1454, 1782, 1919
MaeII	ACGT	1 cut(s)	1257
MaeIII	GTNAC	6 cut(s)	694, 703, 907, 1195, 1547, 2029
MalI	GATC	6 cut(s)	231, 1056, 1121, 1444, 1593, 1817
MboI	GATC	6 cut(s)	229, 1054, 1119, 1442, 1591, 1815
MboII	GAAGA	8 cut(s)	89, 405, 452, 787, 989, 1571, 1746, 1901
MflI	RGATCY	3 cut(s)	1054, 1442, 1591
MhlI	GDGCHC	8 cut(s)	247, 727, 762, 1239, 1333, 1413, 1434, 2096
MluCI	AATT	9 cut(s)	84, 138, 598, 861, 1163, 1676, 1808, 2046, 2075
MlyI	GAGTC	3 cut(s)	1174, 1787, 1929
MmeI	TCCRAC	1 cut(s)	186
MnlI	CCTC	9 cut(s)	436, 549, 934, 1470, 1567, 1641, 1867, 1991, 2082
MroI	TCCGGA	1 cut(s)	1671
MroXI	GAANNNNTTC	1 cut(s)	981
MseI	TTAA	8 cut(s)	87, 299, 501, 608, 732, 1017, 1824, 1974
MslI	CAYNNNNRTG	8 cut(s)	276, 462, 495, 630, 821, 1175, 1419, 1965
MspA1I	CMGCKG	1 cut(s)	107
MspCI	CTTAAG	1 cut(s)	731
MspI	CCGG	2 cut(s)	575, 1672
MspR9I	CCNGG	5 cut(s)	576, 1201, 1510, 1645, 1710
Mva1269I	GAATGC	4 cut(s)	511, 856, 1117, 1210
MvaI	CCWGG	4 cut(s)	1201, 1510, 1645, 1710
MvnI	CGCG	1 cut(s)	883
MwoI	GCNNNNNNNGC	3 cut(s)	143, 911, 1283
NciI	CCSGG	1 cut(s)	576
NdeI	CATATG	3 cut(s)	700, 1335, 1930
NdeII	GATC	6 cut(s)	229, 1054, 1119, 1442, 1591, 1815
NheI	GCTAGC	1 cut(s)	1918
NlaIV	GGNNCC	2 cut(s)	1433, 1593
NmuCI	GTSAC	4 cut(s)	703, 907, 1195, 2029
NspI	RCATGY	3 cut(s)	635, 1067, 1129
NspV	TTCGAA	1 cut(s)	22
OliI	CACNNNNGTG	1 cut(s)	1965
PagI	TCATGA	2 cut(s)	1264, 1938
PaqCI	CACCTGC	1 cut(s)	42
PciI	ACATGT	1 cut(s)	1125
PctI	GAATGC	4 cut(s)	511, 856, 1117, 1210
PdmI	GAANNNNTTC	1 cut(s)	981
PfeI	GAWTC	4 cut(s)	176, 260, 1190, 2067
PflFI	GACNNNGTC	1 cut(s)	747
PflMI	CCANNNNNTGG	1 cut(s)	1650
PkrI	GCNGC	4 cut(s)	916, 1156, 1279, 1855
PleI	GAGTC	3 cut(s)	1174, 1786, 1929
PpsI	GAGTC	3 cut(s)	1174, 1786, 1929
PscI	ACATGT	1 cut(s)	1125
PshAI	GACNNNNGTC	1 cut(s)	905
Psp6I	CCWGG	4 cut(s)	1199, 1508, 1643, 1708
PspFI	CCCAGC	1 cut(s)	305
PspGI	CCWGG	4 cut(s)	1199, 1508, 1643, 1708
PspN4I	GGNNCC	2 cut(s)	1433, 1593
PsrI	GAACNNNNNNTAC	2 cut(s)	1560, 1592
PstI	CTGCAG	2 cut(s)	907, 1489
PsuI	RGATCY	3 cut(s)	1054, 1442, 1591
PsyI	GACNNNGTC	1 cut(s)	747
PvuII	CAGCTG	1 cut(s)	107
RsaI	GTAC	4 cut(s)	218, 295, 935, 1539
RsaNI	GTAC	4 cut(s)	217, 294, 934, 1538
RseI	CAYNNNNRTG	8 cut(s)	276, 462, 495, 630, 821, 1175, 1419, 1965
SaqAI	TTAA	8 cut(s)	87, 299, 501, 608, 732, 1017, 1824, 1974
SatI	GCNGC	4 cut(s)	915, 1155, 1278, 1854
Sau3AI	GATC	6 cut(s)	229, 1054, 1119, 1442, 1591, 1815
SchI	GAGTC	3 cut(s)	1174, 1787, 1929
ScrFI	CCNGG	5 cut(s)	576, 1201, 1510, 1645, 1710
SduI	GDGCHC	8 cut(s)	247, 727, 762, 1239, 1333, 1413, 1434, 2096
SfcI	CTRYAG	2 cut(s)	903, 1485
SfuI	TTCGAA	1 cut(s)	22
SmiMI	CAYNNNNRTG	8 cut(s)	276, 462, 495, 630, 821, 1175, 1419, 1965
SmlI	CTYRAG	4 cut(s)	121, 238, 731, 739
SmoI	CTYRAG	4 cut(s)	121, 238, 731, 739
Sse9I	AATT	9 cut(s)	84, 138, 598, 861, 1163, 1676, 1808, 2046, 2075
SsiI	CCGC	6 cut(s)	66, 883, 915, 1007, 1140, 1856
SspMI	CTAG	5 cut(s)	1068, 1253, 1454, 1782, 1919
StyD4I	CCNGG	5 cut(s)	574, 1199, 1508, 1643, 1708
StyI	CCWWGG	1 cut(s)	1638
TaaI	ACNGT	5 cut(s)	10, 406, 428, 571, 1386
TaiI	ACGT	1 cut(s)	1260
TaqI	TCGA	3 cut(s)	22, 527, 1186
TasI	AATT	9 cut(s)	84, 138, 598, 861, 1163, 1676, 1808, 2046, 2075
TatI	WGTACW	2 cut(s)	216, 1537
TauI	GCSGC	1 cut(s)	917
TfiI	GAWTC	4 cut(s)	176, 260, 1190, 2067
Tru1I	TTAA	8 cut(s)	87, 299, 501, 608, 732, 1017, 1824, 1974
Tru9I	TTAA	8 cut(s)	87, 299, 501, 608, 732, 1017, 1824, 1974
TscAI	CASTG	5 cut(s)	433, 458, 491, 576, 861
TseFI	GTSAC	4 cut(s)	703, 907, 1195, 2029
TseI	GCWGC	3 cut(s)	1154, 1277, 1853
Tsp45I	GTSAC	4 cut(s)	703, 907, 1195, 2029
TspRI	CASTG	5 cut(s)	433, 458, 491, 576, 861
Tth111I	GACNNNGTC	1 cut(s)	747
Van91I	CCANNNNNTGG	1 cut(s)	1650
Vha464I	CTTAAG	1 cut(s)	731
VneI	GTGCAC	1 cut(s)	758
XapI	RAATTY	1 cut(s)	861
XceI	RCATGY	3 cut(s)	635, 1067, 1129
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1103
XmnI	GAANNNNTTC	1 cut(s)	981
XspI	CTAG	5 cut(s)	1068, 1253, 1454, 1782, 1919

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.