Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr09

Orthogroup ID

OG0013047

Physical Location & Seq

Genomic Coordinates Reverse (-)

4243209 .. 4245287

Gene Structure 2079 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD09G1062500.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1419 bp

ATGGCCTCCCACCACCACCTCCACCACGCTCACCACCACCAACCTCCACCCCCCACCACCGCCATTTGCTGCACCAGCTCCTACAACACCTGCTGCTGCACCCAAACCCACAACCCCTACCCGCCACAACCACCACCGCCACCAGCCACAGACCCACTTCTCCAAGCCCTCGCTTCTCAGTTTCTCCAATCCACCCCACCAGATCCCTACTCTCCCCACCACAATCTCCGCCCCAAAAACCCTCACCACACCCACAATGCCCACCACCCAAAACACCGTTTCCGCCAACAACCCCCACAAGACCAACTTATCTCCTCCCTCCTTTCCCGCATTGAAGCCCTCGAATCTTCCCTCCACCACCACTCCTCCTCTGCCTCGCACTGCTCTCACTCTCCGTACTCCCGCTCTCTCAGAGACTCCGCCGCCCGAGTGATTCAAACCCACTTCCGTGCGTTCCTCGTTCGCAGATCCCGAACCCTCAGGCAGCTCAAAGACCTCTCATTCATCAAGTCTGCTTTCACCTCTCTCAAATCCTCGATTTCCAGTGAAACCCACTTGGATTTTCACGCCATTTCTCAGAAATCCATCAATTTACTTCTCAAGCTCGACTCGATTCAGGGCGGCGATCCGATTGTTAGGGATGGGAAGAGGTCGATTAGCAGAGATTTGGTGAGGTTTTTGGAGTTCATTGATGGGGTTGTTATGAAAAGGCATGGGCTTTCACTGAAAGCAGTGAAGAATGTGAAAGGGGTGAAGAATGTGAGGTTTGGTCAAAATGTTAACAAACCACGGGTTTTACCCGCCAAGTGCGGTCGCGATATGGGATGGGATCAGAGGGAGAAGATTGAGAATTTGAGGGATAGGATCGAGAAGATTCGCGGGTTTGCTAGAATTGCTGAGAATGATGAGGAAGATGTGGAGCTTGAAGGATTTCAGCATGACAGTGATGAAGATGAAGAAAACCTTAGACTTCGATTTAAAAATGGGGTGTTGGTGAAAGGGCATGGGCTTCAACCTAAGGTCAAGAAAAATGTGAGCTTTGCAGAGAATGGGAATGTGTATCGGGTCTTTAGCAACTCCGATGAACCAGTCTTGGGTTGGGATGGGAGTGATTCTAGTGATGATCATGGAGAGCTTGTTGAGAACCGTTGCAGTGAGGTTGAAGAAGTTAAGGGCATTTCTCAGGAGACCGAGGAGGATGACGAGGAGGCGCACACCGAGAATGGCGAATCACCACAGGCCAGCAGTGATGGAGAAAGAAACCCCAGAGCTAGAATGACTCCGAGAAGAGAAGATATTTATGAAACCAGAGGCCGTGATCAAGTTCAGAATGAGTATTTGCTATTCTCAGCTCCTTTGCCGGTGAAGATGGAGTCGAAATCTGACATCTTAAAGAGAAATAAGGCTGTGAAACTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005623 GO:0005886 GO:0005911 GO:0006457 GO:0008150 GO:0009266 GO:0009506 GO:0009605 GO:0009607 GO:0009628 GO:0009987 GO:0016020 GO:0030054 GO:0043207 GO:0044464 GO:0050896 GO:0055044 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

BAG

Protein Analysis

473

Amino Acids

53.54

Weight (kDa)

7.77

Isoelectric Point (pI)

53.95

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0013047)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G29310
fragaria_vesca	FvH4_6g47270
malus_domestica	MD00G1156300.v1.1 MD09G1062500.v1.1
prunus_persica	Prupe.3G257800_v2.0.a1
pyrus_communis	pycom111g05280 pycom17g05630
rosa_chinensis	RchiOBHm_Chr2g0166341
rosa_laevigata	RLG00000021611
rosa_multiflora	Rmu_co8270777.1_g000001 Rmu_sc0030614.1_g000002
rosa_roxburghii	Rroxscaffold_2G00084970
rosa_rugosa	Rorug02G0522200
rosa_samantha	Rh2AG588300 Rh2BG600300 Rh2CG571200 Rh2DG610500
rosa_wichuraiana	Rw2G049030

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	98
Acc36I	ACCTGC	1 cut(s)	98
AccBSI	CCGCTC	1 cut(s)	405
AccII	CGCG	2 cut(s)	816, 879
AclWI	GGATC	5 cut(s)	197, 462, 620, 837, 872
AcsI	RAATTY	1 cut(s)	850
AfaI	GTAC	1 cut(s)	398
AfiI	CCNNNNNNNGG	1 cut(s)	1094
AgsI	TTSAA	5 cut(s)	335, 437, 926, 1013, 1163
AleI	CACNNNNGTG	1 cut(s)	447
AluBI	AGCT	8 cut(s)	78, 487, 604, 922, 1038, 1135, 1271, 1352
AluI	AGCT	8 cut(s)	78, 487, 604, 922, 1038, 1135, 1271, 1352
Alw26I	GTCTC	2 cut(s)	408, 1181
AlwI	GGATC	5 cut(s)	197, 462, 620, 837, 872
Ama87I	CYCGRG	1 cut(s)	426
AoxI	GGCC	3 cut(s)	3, 1239, 1312
ApeKI	GCWGC	4 cut(s)	69, 93, 96, 484
ApoI	RAATTY	1 cut(s)	850
Asp700I	GAANNNNTTC	1 cut(s)	930
AspLEI	GCGC	1 cut(s)	1213
AsuHPI	GGTGA	8 cut(s)	23, 236, 511, 682, 763, 1006, 1224, 1375
AvaI	CYCGRG	1 cut(s)	426
AxyI	CCTNAGG	2 cut(s)	479, 1017
BbvI	GCAGC	4 cut(s)	56, 80, 83, 496
BccI	CCATC	7 cut(s)	593, 635, 686, 819, 1097, 1244, 1363
BceAI	ACGGC	1 cut(s)	1299
BclI	TGATCA	2 cut(s)	1123, 1318
BcoDI	GTCTC	2 cut(s)	408, 1181
BfaI	CTAG	3 cut(s)	888, 1116, 1272
BfuAI	ACCTGC	1 cut(s)	98
BisI	GCNGC	6 cut(s)	70, 94, 97, 423, 485, 622
BlsI	GCNGC	6 cut(s)	71, 95, 98, 424, 486, 623
BmeT110I	CYCGRG	1 cut(s)	426
BpuEI	CTTGAG	1 cut(s)	584
BsaI	GGTCTC	1 cut(s)	1181
BsaJI	CCNNGG	2 cut(s)	788, 1191
BsaXI	ACNNNNNCTCC	6 cut(s)	347, 350, 377, 380, 1122, 1152
Bsc4I	CCNNNNNNNGG	1 cut(s)	1094
Bse118I	RCCGGY	1 cut(s)	1360
Bse1I	ACTGG	2 cut(s)	543, 1088
Bse21I	CCTNAGG	2 cut(s)	479, 1017
BseDI	CCNNGG	2 cut(s)	788, 1191
BseGI	GGATG	4 cut(s)	646, 830, 1108, 1204
BseLI	CCNNNNNNNGG	1 cut(s)	1094
BseMII	CTCAG	7 cut(s)	191, 424, 493, 590, 888, 1196, 1362
BseNI	ACTGG	2 cut(s)	543, 1088
BseRI	GAGGAG	5 cut(s)	304, 355, 358, 1208, 1220
BseXI	GCAGC	4 cut(s)	56, 80, 83, 496
BsgI	GTGCAG	2 cut(s)	55, 82
Bsh1236I	CGCG	2 cut(s)	816, 879
Bsh1285I	CGRYCG	1 cut(s)	814
BshFI	GGCC	3 cut(s)	5, 1241, 1314
BsiEI	CGRYCG	1 cut(s)	814
BsiHKCI	CYCGRG	1 cut(s)	426
BsiSI	CCGG	1 cut(s)	1361
BslI	CCNNNNNNNGG	1 cut(s)	1094
BsmAI	GTCTC	2 cut(s)	408, 1181
BsnI	GGCC	3 cut(s)	5, 1241, 1314
Bso31I	GGTCTC	1 cut(s)	1181
BsoBI	CYCGRG	1 cut(s)	426
Bsp143I	GATC	7 cut(s)	202, 467, 625, 829, 864, 1123, 1318
Bsp68I	TCGCGA	1 cut(s)	816
BspANI	GGCC	3 cut(s)	5, 1241, 1314
BspCNI	CTCAG	7 cut(s)	190, 423, 492, 589, 889, 1195, 1361
BspFNI	CGCG	2 cut(s)	816, 879
BspMI	ACCTGC	1 cut(s)	98
BspPI	GGATC	5 cut(s)	197, 462, 620, 837, 872
BspTNI	GGTCTC	1 cut(s)	1181
BsrBI	CCGCTC	1 cut(s)	405
BsrFI	RCCGGY	1 cut(s)	1360
BsrI	ACTGG	2 cut(s)	543, 1088
BssAI	RCCGGY	1 cut(s)	1360
BssECI	CCNNGG	2 cut(s)	788, 1191
BssMI	GATC	7 cut(s)	202, 467, 625, 829, 864, 1123, 1318
Bst4CI	ACNGT	3 cut(s)	278, 944, 1148
Bst6I	CTCTTC	2 cut(s)	641, 1282
BstC8I	GCNNGC	1 cut(s)	1243
BstDEI	CTNAG	9 cut(s)	177, 410, 479, 576, 897, 965, 1017, 1182, 1348
BstDSI	CCRYGG	1 cut(s)	788
BstF5I	GGATG	4 cut(s)	646, 830, 1108, 1204
BstFNI	CGCG	2 cut(s)	816, 879
BstHHI	GCGC	1 cut(s)	1213
BstKTI	GATC	7 cut(s)	205, 470, 628, 832, 867, 1126, 1321
BstMAI	GTCTC	2 cut(s)	408, 1181
BstMBI	GATC	7 cut(s)	202, 467, 625, 829, 864, 1123, 1318
BstMCI	CGRYCG	1 cut(s)	814
BstMWI	GCNNNNNNNGC	2 cut(s)	75, 893
BstUI	CGCG	2 cut(s)	816, 879
BstV1I	GCAGC	4 cut(s)	56, 80, 83, 496
BstX2I	RGATCY	2 cut(s)	202, 467
BstYI	RGATCY	2 cut(s)	202, 467
Bsu36I	CCTNAGG	2 cut(s)	479, 1017
BsuRI	GGCC	3 cut(s)	5, 1241, 1314
BtgI	CCRYGG	1 cut(s)	788
BtsCI	GGATG	4 cut(s)	646, 830, 1108, 1204
BtsI	GCAGTG	4 cut(s)	379, 738, 1159, 1252
BtsIMutI	CAGTG	7 cut(s)	379, 550, 722, 738, 949, 1159, 1252
BtuMI	TCGCGA	1 cut(s)	816
BveI	ACCTGC	1 cut(s)	98
Cac8I	GCNNGC	1 cut(s)	1243
CfoI	GCGC	1 cut(s)	1213
Cfr10I	RCCGGY	1 cut(s)	1360
Csp6I	GTAC	1 cut(s)	397
CviAII	CATG	4 cut(s)	713, 938, 1004, 1127
CviQI	GTAC	1 cut(s)	397
DdeI	CTNAG	9 cut(s)	177, 410, 479, 576, 897, 965, 1017, 1182, 1348
DpnI	GATC	7 cut(s)	204, 469, 627, 831, 866, 1125, 1320
DpnII	GATC	7 cut(s)	202, 467, 625, 829, 864, 1123, 1318
DraI	TTTAAA	1 cut(s)	979
Eam1104I	CTCTTC	2 cut(s)	641, 1282
EarI	CTCTTC	2 cut(s)	641, 1282
EciI	GGCGGA	3 cut(s)	218, 272, 409
Eco31I	GGTCTC	1 cut(s)	1181
Eco81I	CCTNAGG	2 cut(s)	479, 1017
Eco88I	CYCGRG	1 cut(s)	426
FaeI	CATG	4 cut(s)	716, 941, 1007, 1130
FaiI	YATR	7 cut(s)	704, 714, 821, 939, 1005, 1128, 1302
FalI	AAGNNNNNCTT	4 cut(s)	291, 323, 948, 980
FatI	CATG	4 cut(s)	712, 937, 1003, 1126
FauI	CCCGC	5 cut(s)	129, 335, 410, 808, 872
FbaI	TGATCA	2 cut(s)	1123, 1318
Fnu4HI	GCNGC	6 cut(s)	70, 94, 97, 423, 485, 622
FokI	GGATG	4 cut(s)	653, 837, 1115, 1211
Fsp4HI	GCNGC	6 cut(s)	70, 94, 97, 423, 485, 622
FspBI	CTAG	3 cut(s)	888, 1116, 1272
GlaI	GCGC	1 cut(s)	1212
GluI	GCNGC	6 cut(s)	70, 94, 97, 423, 485, 622
HaeIII	GGCC	3 cut(s)	5, 1241, 1314
HapII	CCGG	1 cut(s)	1361
HhaI	GCGC	1 cut(s)	1213
Hin1II	CATG	4 cut(s)	716, 941, 1007, 1130
Hin6I	GCGC	1 cut(s)	1211
HinP1I	GCGC	1 cut(s)	1211
HincII	GTYRAC	1 cut(s)	781
HindII	GTYRAC	1 cut(s)	781
HpaI	GTTAAC	1 cut(s)	781
HpaII	CCGG	1 cut(s)	1361
HphI	GGTGA	8 cut(s)	23, 236, 511, 682, 763, 1006, 1224, 1375
Hpy166II	GTNNAC	1 cut(s)	781
Hpy188I	TCNGA	8 cut(s)	413, 579, 630, 834, 1081, 1284, 1329, 1384
Hpy188III	TCNNGA	5 cut(s)	471, 815, 868, 1024, 1184
Hpy8I	GTNNAC	1 cut(s)	781
HpyAV	CCTTC	1 cut(s)	920
HpyCH4III	ACNGT	3 cut(s)	278, 944, 1148
HpyCH4V	TGCA	4 cut(s)	72, 99, 1043, 1152
HpyF10VI	GCNNNNNNNGC	2 cut(s)	75, 893
HpyF3I	CTNAG	9 cut(s)	177, 410, 479, 576, 897, 965, 1017, 1182, 1348
Hsp92II	CATG	4 cut(s)	716, 941, 1007, 1130
HspAI	GCGC	1 cut(s)	1211
Ksp22I	TGATCA	2 cut(s)	1123, 1318
KspAI	GTTAAC	1 cut(s)	781
Kzo9I	GATC	7 cut(s)	202, 467, 625, 829, 864, 1123, 1318
LmnI	GCTCC	3 cut(s)	83, 919, 1357
Lsp1109I	GCAGC	4 cut(s)	56, 80, 83, 496
MaeI	CTAG	3 cut(s)	888, 1116, 1272
MalI	GATC	7 cut(s)	204, 469, 627, 831, 866, 1125, 1320
MbiI	CCGCTC	1 cut(s)	405
MboI	GATC	7 cut(s)	202, 467, 625, 829, 864, 1123, 1318
MflI	RGATCY	2 cut(s)	202, 467
MluCI	AATT	3 cut(s)	589, 850, 891
MlyI	GAGTC	4 cut(s)	410, 602, 1273, 1382
MroXI	GAANNNNTTC	1 cut(s)	930
MseI	TTAA	4 cut(s)	780, 978, 1170, 1391
MslI	CAYNNNNRTG	2 cut(s)	447, 942
MspI	CCGG	1 cut(s)	1361
MvnI	CGCG	2 cut(s)	816, 879
MwoI	GCNNNNNNNGC	2 cut(s)	75, 893
NdeII	GATC	7 cut(s)	202, 467, 625, 829, 864, 1123, 1318
NlaIII	CATG	4 cut(s)	716, 941, 1007, 1130
NruI	TCGCGA	1 cut(s)	816
OliI	CACNNNNGTG	1 cut(s)	447
PaqCI	CACCTGC	1 cut(s)	98
PcsI	WCGNNNNNNNCGW	1 cut(s)	469
PdmI	GAANNNNTTC	1 cut(s)	930
PfeI	GAWTC	6 cut(s)	344, 433, 613, 874, 1112, 1229
PkrI	GCNGC	6 cut(s)	71, 95, 98, 424, 486, 623
PleI	GAGTC	4 cut(s)	410, 602, 1273, 1381
PpsI	GAGTC	4 cut(s)	410, 602, 1273, 1381
PsuI	RGATCY	2 cut(s)	202, 467
RruI	TCGCGA	1 cut(s)	816
RsaI	GTAC	1 cut(s)	398
RsaNI	GTAC	1 cut(s)	397
RseI	CAYNNNNRTG	2 cut(s)	447, 942
SaqAI	TTAA	4 cut(s)	780, 978, 1170, 1391
SatI	GCNGC	6 cut(s)	70, 94, 97, 423, 485, 622
Sau3AI	GATC	7 cut(s)	202, 467, 625, 829, 864, 1123, 1318
SchI	GAGTC	4 cut(s)	410, 602, 1273, 1382
SmiMI	CAYNNNNRTG	2 cut(s)	447, 942
SmlI	CTYRAG	1 cut(s)	599
SmoI	CTYRAG	1 cut(s)	599
Sse9I	AATT	3 cut(s)	589, 850, 891
SspMI	CTAG	3 cut(s)	888, 1116, 1272
TaaI	ACNGT	3 cut(s)	278, 944, 1148
TaqI	TCGA	8 cut(s)	342, 536, 606, 611, 653, 867, 973, 1376
TaqII	GACCGA	1 cut(s)	1205
TasI	AATT	3 cut(s)	589, 850, 891
TauI	GCSGC	2 cut(s)	425, 624
TfiI	GAWTC	6 cut(s)	344, 433, 613, 874, 1112, 1229
Tru1I	TTAA	4 cut(s)	780, 978, 1170, 1391
Tru9I	TTAA	4 cut(s)	780, 978, 1170, 1391
TscAI	CASTG	7 cut(s)	386, 550, 729, 738, 949, 1159, 1252
TseI	GCWGC	4 cut(s)	69, 93, 96, 484
TspDTI	ATGAA	7 cut(s)	493, 676, 719, 963, 969, 1098, 1317
TspGWI	ACGGA	2 cut(s)	384, 437
TspRI	CASTG	7 cut(s)	386, 550, 729, 738, 949, 1159, 1252
XapI	RAATTY	1 cut(s)	850
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1095
XmnI	GAANNNNTTC	1 cut(s)	930
XspI	CTAG	3 cut(s)	888, 1116, 1272

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.