Rroxscaffold_2G00084970

BAG family molecular chaperone regulator 8

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
OG0013047
Physical Location & Seq
Reverse (-)
7389545 .. 7391276
1732 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_2G00084970.1

Sequence Viewer

Length: 1341 bp
ATGGCCTCTCACTACCACCACCCTCACCACCACCAAAACCACCCTCCCACCACCACTTGCTGCTGCACCACCTCCTACTCCTCCTGCCACTGCACCCAATCCCACCACCCCTACCCTCCACCACACCCACATCAACCATCCCCAGACCCACTTCTCCAAGCCATTGCCTCTCAACTCCTCATTTCCAATCCCCCAGATCCCTACCTCCACCACCACCAAAACCCTCACAAAACCCACAAATCCCAACACCCAAAACACCGTTCCCACATTCAAGAACACCAAGAACAACAACTACACTCTCTTCTTTCCAGAATCGAAGCCCTAGAAGCTTCTCTGCATCACTACTCTTCCAATCGGTCTCGGTCTTCGAATTCTTACTCTCTCAGAGACTATGCTGCTCGGGTTATTCAGACCCATTTCCGGGCCTTCCTTGTTCGCCGATCAAGGACTCTCAGGCAGCTCAAAGACCTCGCCTTTATCAAGTCCTCTTTCGCCTCTCTCAAGTCTTCGGTTTCGAACCAGACCCAGTTCGACTTTCACTCCGTTTCTCAGAAAGCACTCGCTTTGCTTACCAAGCTGGACTCTATTCAGTGTGGTGATTCGATTGTTAGAGATGGGAAGAGGTCTATAAGTAGAGATTTAGTTCAGTTCTTAGAGTTTATCGAAGGGGTTGTTGTGAAAAGGCAGGCGATTTGCTTGAAACCAGGGAAGAATGTGAGGTCTGTTCAAAATGTGAGTAAGTCTAGGGGTTTGGGTAACAAATGTGGAGGTTTGGGGAGGGATCAGAGGGAGATGATTGGGAAATTGAGGGAGAGGATTGAGAAGATTCGCGGGTTTGCTAGAGTTTCAGAGAATGATGAGGAGGATGTGGAGCTGGAAGGGTTTCAACATGTCAGTGATGATGATGAAGAAAGTGTAGGTCAATATCGGAATGGGGCAGCGGTGAAGAGGCATGGGTTTCAACCTAAGGTGAAGAAGAGTGTGAGCTTTGCAGAGGATGGGAATGTGTTTAGGGTCTTTAGCAACAGCGATGAGGCTACGTCAAGTGGGGATGTGAGTGATTCCAGTGATGATCACGGAGAGCGTGTTGAGAACTGTAGTGAAGTTGAGGATGTTAAGGGCTTTGCTCAGGAGACTGAGGATGATGATGAGGCGCACTTAGAAAATGGCGGATCACCGCAGACCAGTGATGCAGAAAGAAACCCTAGAGCTAGAATGACTCAGAGAAGAGGCCATGGTCAGGGTCAGAATGAGCATTTGTTGTTCTCCCCTCCTTTGCCTGTGAAGATGGATTCTAAAGATGTGGTGAAAATAAACAAGGGTGTAAAGATTGTGACATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005623 GO:0005886 GO:0005911 GO:0006457 GO:0008150 GO:0009266 GO:0009506 GO:0009605 GO:0009607 GO:0009628 GO:0009987 GO:0016020 GO:0030054 GO:0043207 GO:0044464 GO:0050896 GO:0055044 GO:0071944
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
BAG

Protein Analysis

446

Amino Acids

50.21

Weight (kDa)

8.07

Isoelectric Point (pI)

52.07

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013047)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G29310
fragaria_vesca FvH4_6g47270
malus_domestica MD00G1156300.v1.1 MD09G1062500.v1.1
prunus_persica Prupe.3G257800_v2.0.a1
pyrus_communis pycom111g05280 pycom17g05630
rosa_chinensis RchiOBHm_Chr2g0166341
rosa_laevigata RLG00000021611
rosa_multiflora Rmu_co8270777.1_g000001 Rmu_sc0030614.1_g000002
rosa_roxburghii Rroxscaffold_2G00084970
rosa_rugosa Rorug02G0522200
rosa_samantha Rh2AG588300 Rh2BG600300 Rh2CG571200 Rh2DG610500
rosa_wichuraiana Rw2G049030

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 831
AciI CCGC 4 cut(s) 831, 941, 1170, 1178
AclWI GGATC 3 cut(s) 191, 789, 1180
AcsI RAATTY 1 cut(s) 370
AfiI CCNNNNNNNGG 3 cut(s) 420, 421, 1240
AflIII ACRYGT 1 cut(s) 889
AgsI TTSAA 5 cut(s) 272, 700, 728, 887, 962
AjnI CCWGG 1 cut(s) 703
AjuI GAANNNNNNNTTGG 2 cut(s) 244, 276
AluBI AGCT 6 cut(s) 329, 460, 577, 874, 987, 1211
AluI AGCT 6 cut(s) 329, 460, 577, 874, 987, 1211
Alw26I GTCTC 3 cut(s) 363, 381, 1127
AlwI GGATC 3 cut(s) 191, 789, 1180
Ama87I CYCGRG 1 cut(s) 399
AoxI GGCC 3 cut(s) 3, 423, 1231
ApeKI GCWGC 5 cut(s) 60, 63, 395, 457, 938
ApoI RAATTY 1 cut(s) 370
Asp700I GAANNNNTTC 1 cut(s) 882
AspLEI GCGC 1 cut(s) 1156
AspS9I GGNCC 1 cut(s) 423
AsuC2I CCSGG 1 cut(s) 422
AsuHPI GGTGA 6 cut(s) 17, 608, 955, 982, 1167, 1318
AsuII TTCGAA 2 cut(s) 368, 515
AvaI CYCGRG 1 cut(s) 399
AxyI CCTNAGG 1 cut(s) 966
BbsI GAAGAC 2 cut(s) 357, 498
BbvI GCAGC 5 cut(s) 47, 50, 382, 469, 950
BccI CCATC 4 cut(s) 145, 608, 992, 1282
BciT130I CCWGG 1 cut(s) 705
BclI TGATCA 1 cut(s) 1072
BcnI CCSGG 1 cut(s) 422
BcoDI GTCTC 3 cut(s) 363, 381, 1127
BfaI CTAG 5 cut(s) 323, 744, 840, 1206, 1212
BfmI CTRYAG 1 cut(s) 1096
BisI GCNGC 5 cut(s) 61, 64, 396, 458, 939
BlsI GCNGC 5 cut(s) 62, 65, 397, 459, 940
Bme1390I CCNGG 2 cut(s) 422, 705
BmeT110I CYCGRG 1 cut(s) 399
BmgT120I GGNCC 1 cut(s) 423
BmrFI CCNGG 2 cut(s) 422, 705
BmrI ACTGGG 1 cut(s) 520
BmsI GCATC 2 cut(s) 346, 1180
BmuI ACTGGG 1 cut(s) 520
BpiI GAAGAC 2 cut(s) 357, 498
Bpu10I CCTNAGC 1 cut(s) 1128
Bpu14I TTCGAA 2 cut(s) 368, 515
BpuEI CTTGAG 1 cut(s) 485
BpuMI CCSGG 1 cut(s) 422
BsaI GGTCTC 1 cut(s) 363
BsaJI CCNNGG 2 cut(s) 704, 1234
BsaXI ACNNNNNCTCC 4 cut(s) 524, 554, 1071, 1101
Bsc4I CCNNNNNNNGG 3 cut(s) 420, 421, 1240
Bse1I ACTGG 3 cut(s) 526, 1065, 1185
Bse21I CCTNAGG 1 cut(s) 966
Bse3DI GCAATG 1 cut(s) 162
BseBI CCWGG 1 cut(s) 705
BseDI CCNNGG 2 cut(s) 704, 1234
BseGI GGATG 6 cut(s) 137, 871, 1003, 1057, 1117, 1147
BseLI CCNNNNNNNGG 3 cut(s) 420, 421, 1240
BseMI GCAATG 1 cut(s) 162
BseMII CTCAG 6 cut(s) 397, 466, 563, 1128, 1142, 1235
BseNI ACTGG 3 cut(s) 526, 1065, 1185
BseRI GAGGAG 3 cut(s) 70, 167, 875
BseXI GCAGC 5 cut(s) 47, 50, 382, 469, 950
BsgI GTGCAG 2 cut(s) 49, 76
Bsh1236I CGCG 1 cut(s) 831
BshFI GGCC 3 cut(s) 5, 425, 1233
BsiHKCI CYCGRG 1 cut(s) 399
BsiSI CCGG 1 cut(s) 421
BslI CCNNNNNNNGG 3 cut(s) 420, 421, 1240
BsmAI GTCTC 3 cut(s) 363, 381, 1127
BsnI GGCC 3 cut(s) 5, 425, 1233
Bso31I GGTCTC 1 cut(s) 363
BsoBI CYCGRG 1 cut(s) 399
Bsp119I TTCGAA 2 cut(s) 368, 515
Bsp143I GATC 5 cut(s) 196, 440, 781, 1072, 1172
Bsp19I CCATGG 1 cut(s) 1234
BspACI CCGC 4 cut(s) 831, 941, 1170, 1178
BspANI GGCC 3 cut(s) 5, 425, 1233
BspCNI CTCAG 6 cut(s) 396, 465, 562, 1129, 1141, 1234
BspFNI CGCG 1 cut(s) 831
BspPI GGATC 3 cut(s) 191, 789, 1180
BspT104I TTCGAA 2 cut(s) 368, 515
BspTNI GGTCTC 1 cut(s) 363
BsrDI GCAATG 1 cut(s) 162
BsrI ACTGG 3 cut(s) 526, 1065, 1185
BssECI CCNNGG 2 cut(s) 704, 1234
BssMI GATC 5 cut(s) 196, 440, 781, 1072, 1172
BssT1I CCWWGG 1 cut(s) 1234
Bst2UI CCWGG 1 cut(s) 705
Bst4CI ACNGT 2 cut(s) 260, 1097
Bst6I CTCTTC 6 cut(s) 306, 352, 614, 941, 971, 1222
BstBI TTCGAA 2 cut(s) 368, 515
BstC8I GCNNGC 1 cut(s) 687
BstDEI CTNAG 9 cut(s) 383, 452, 549, 652, 966, 1128, 1137, 1159, 1221
BstDSI CCRYGG 1 cut(s) 1234
BstF5I GGATG 6 cut(s) 137, 871, 1003, 1057, 1117, 1147
BstFNI CGCG 1 cut(s) 831
BstHHI GCGC 1 cut(s) 1156
BstKTI GATC 5 cut(s) 199, 443, 784, 1075, 1175
BstMAI GTCTC 3 cut(s) 363, 381, 1127
BstMBI GATC 5 cut(s) 196, 440, 781, 1072, 1172
BstMWI GCNNNNNNNGC 2 cut(s) 326, 574
BstNI CCWGG 1 cut(s) 705
BstNSI RCATGY 1 cut(s) 893
BstSCI CCNGG 2 cut(s) 420, 703
BstSFI CTRYAG 1 cut(s) 1096
BstUI CGCG 1 cut(s) 831
BstV1I GCAGC 5 cut(s) 47, 50, 382, 469, 950
BstV2I GAAGAC 2 cut(s) 357, 498
BstX2I RGATCY 1 cut(s) 196
BstYI RGATCY 1 cut(s) 196
Bsu36I CCTNAGG 1 cut(s) 966
BsuRI GGCC 3 cut(s) 5, 425, 1233
BtgI CCRYGG 1 cut(s) 1234
BtgZI GCGATG 1 cut(s) 1044
BtsCI GGATG 6 cut(s) 137, 871, 1003, 1057, 1117, 1147
BtsI GCAGTG 1 cut(s) 88
BtsIMutI CAGTG 5 cut(s) 88, 596, 901, 1072, 1192
Cac8I GCNNGC 1 cut(s) 687
CfoI GCGC 1 cut(s) 1156
Cfr13I GGNCC 1 cut(s) 423
CviAII CATG 4 cut(s) 890, 953, 1235, 1338
DdeI CTNAG 9 cut(s) 383, 452, 549, 652, 966, 1128, 1137, 1159, 1221
DpnI GATC 5 cut(s) 198, 442, 783, 1074, 1174
DpnII GATC 5 cut(s) 196, 440, 781, 1072, 1172
Eam1104I CTCTTC 6 cut(s) 306, 352, 614, 941, 971, 1222
EarI CTCTTC 6 cut(s) 306, 352, 614, 941, 971, 1222
EciI GGCGGA 1 cut(s) 1185
Eco130I CCWWGG 1 cut(s) 1234
Eco31I GGTCTC 1 cut(s) 363
Eco81I CCTNAGG 1 cut(s) 966
Eco88I CYCGRG 1 cut(s) 399
EcoRI GAATTC 1 cut(s) 370
EcoRII CCWGG 1 cut(s) 703
EcoT14I CCWWGG 1 cut(s) 1234
ErhI CCWWGG 1 cut(s) 1234
FaeI CATG 4 cut(s) 893, 956, 1238, 1341
FaiI YATR 6 cut(s) 393, 629, 891, 954, 1236, 1339
FatI CATG 4 cut(s) 889, 952, 1234, 1337
FauI CCCGC 1 cut(s) 824
FbaI TGATCA 1 cut(s) 1072
Fnu4HI GCNGC 5 cut(s) 61, 64, 396, 458, 939
FokI GGATG 6 cut(s) 124, 878, 1010, 1064, 1124, 1154
Fsp4HI GCNGC 5 cut(s) 61, 64, 396, 458, 939
FspBI CTAG 5 cut(s) 323, 744, 840, 1206, 1212
GlaI GCGC 1 cut(s) 1155
GluI GCNGC 5 cut(s) 61, 64, 396, 458, 939
HaeIII GGCC 3 cut(s) 5, 425, 1233
HapII CCGG 1 cut(s) 421
HhaI GCGC 1 cut(s) 1156
Hin1II CATG 4 cut(s) 893, 956, 1238, 1341
Hin6I GCGC 1 cut(s) 1154
HinP1I GCGC 1 cut(s) 1154
HindIII AAGCTT 1 cut(s) 327
HinfI GANTC 8 cut(s) 312, 448, 581, 599, 826, 1061, 1219, 1292
HpaII CCGG 1 cut(s) 421
HphI GGTGA 6 cut(s) 17, 608, 955, 982, 1167, 1318
Hpy188I TCNGA 8 cut(s) 386, 411, 552, 786, 850, 930, 1224, 1248
Hpy188III TCNNGA 3 cut(s) 272, 309, 1130
HpyAV CCTTC 3 cut(s) 436, 659, 872
HpyCH4III ACNGT 2 cut(s) 260, 1097
HpyCH4IV ACGT 1 cut(s) 1040
HpyCH4V TGCA 5 cut(s) 66, 93, 337, 992, 1193
HpyF10VI GCNNNNNNNGC 2 cut(s) 326, 574
HpyF3I CTNAG 9 cut(s) 383, 452, 549, 652, 966, 1128, 1137, 1159, 1221
HpySE526I ACGT 1 cut(s) 1040
Hsp92II CATG 4 cut(s) 893, 956, 1238, 1341
HspAI GCGC 1 cut(s) 1154
Ksp22I TGATCA 1 cut(s) 1072
Kzo9I GATC 5 cut(s) 196, 440, 781, 1072, 1172
LmnI GCTCC 1 cut(s) 871
Lsp1109I GCAGC 5 cut(s) 47, 50, 382, 469, 950
LweI GCATC 2 cut(s) 346, 1180
MaeI CTAG 5 cut(s) 323, 744, 840, 1206, 1212
MaeII ACGT 1 cut(s) 1040
MaeIII GTNAC 2 cut(s) 755, 1333
MalI GATC 5 cut(s) 198, 442, 783, 1074, 1174
MboI GATC 5 cut(s) 196, 440, 781, 1072, 1172
MflI RGATCY 1 cut(s) 196
MluCI AATT 2 cut(s) 370, 803
MlyI GAGTC 3 cut(s) 442, 575, 1213
MroXI GAANNNNTTC 1 cut(s) 882
MseI TTAA 1 cut(s) 1116
MslI CAYNNNNRTG 1 cut(s) 894
MspA1I CMGCKG 1 cut(s) 941
MspI CCGG 1 cut(s) 421
MspR9I CCNGG 2 cut(s) 422, 705
MvaI CCWGG 1 cut(s) 705
MvnI CGCG 1 cut(s) 831
MwoI GCNNNNNNNGC 2 cut(s) 326, 574
NciI CCSGG 1 cut(s) 422
NcoI CCATGG 1 cut(s) 1234
NdeII GATC 5 cut(s) 196, 440, 781, 1072, 1172
NlaIII CATG 4 cut(s) 893, 956, 1238, 1341
NmuCI GTSAC 1 cut(s) 1333
NspI RCATGY 1 cut(s) 893
NspV TTCGAA 2 cut(s) 368, 515
PciI ACATGT 1 cut(s) 889
PdmI GAANNNNTTC 1 cut(s) 882
PfeI GAWTC 5 cut(s) 312, 599, 826, 1061, 1292
PkrI GCNGC 5 cut(s) 62, 65, 397, 459, 940
PleI GAGTC 3 cut(s) 442, 575, 1213
PpsI GAGTC 3 cut(s) 442, 575, 1213
PscI ACATGT 1 cut(s) 889
Psp6I CCWGG 1 cut(s) 703
PspGI CCWGG 1 cut(s) 703
PspPI GGNCC 1 cut(s) 423
PsrI GAACNNNNNNTAC 2 cut(s) 276, 308
PsuI RGATCY 1 cut(s) 196
RseI CAYNNNNRTG 1 cut(s) 894
SaqAI TTAA 1 cut(s) 1116
SatI GCNGC 5 cut(s) 61, 64, 396, 458, 939
Sau3AI GATC 5 cut(s) 196, 440, 781, 1072, 1172
Sau96I GGNCC 1 cut(s) 423
SchI GAGTC 3 cut(s) 442, 575, 1213
ScrFI CCNGG 2 cut(s) 422, 705
SfaNI GCATC 2 cut(s) 346, 1180
SfcI CTRYAG 1 cut(s) 1096
SfuI TTCGAA 2 cut(s) 368, 515
SmiMI CAYNNNNRTG 1 cut(s) 894
SmlI CTYRAG 1 cut(s) 500
SmoI CTYRAG 1 cut(s) 500
Sse9I AATT 2 cut(s) 370, 803
SsiI CCGC 4 cut(s) 831, 941, 1170, 1178
SspMI CTAG 5 cut(s) 323, 744, 840, 1206, 1212
StyD4I CCNGG 2 cut(s) 420, 703
StyI CCWWGG 1 cut(s) 1234
TaaI ACNGT 2 cut(s) 260, 1097
TaiI ACGT 1 cut(s) 1043
TaqI TCGA 6 cut(s) 315, 368, 515, 531, 602, 663
TaqII GACCGA 2 cut(s) 345, 351
TasI AATT 2 cut(s) 370, 803
TfiI GAWTC 5 cut(s) 312, 599, 826, 1061, 1292
Tru1I TTAA 1 cut(s) 1116
Tru9I TTAA 1 cut(s) 1116
TscAI CASTG 5 cut(s) 95, 596, 901, 1072, 1192
TseFI GTSAC 1 cut(s) 1333
TseI GCWGC 5 cut(s) 60, 63, 395, 457, 938
Tsp45I GTSAC 1 cut(s) 1333
TspDTI ATGAA 1 cut(s) 921
TspGWI ACGGA 2 cut(s) 532, 1092
TspRI CASTG 5 cut(s) 95, 596, 901, 1072, 1192
XapI RAATTY 1 cut(s) 370
XceI RCATGY 1 cut(s) 893
XmnI GAANNNNTTC 1 cut(s) 882
XspI CTAG 5 cut(s) 323, 744, 840, 1206, 1212
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.