Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0030614.1

Orthogroup ID

OG0013047

Physical Location & Seq

Genomic Coordinates Reverse (-)

2576 .. 4014

Gene Structure 1439 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0030614.1_g000002.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1338 bp

atggcctctcaccaccaccaccctcaccctcaccaccaccaaaaccaccctcccaccaccacttgctgctgcaccacctcctcctcctcctgccactgcacccaatcccaccacccctaccctccaccacacccagacccacttctccaagccattgcctctcaactcctcatttctaatcccccagatccctacctccatccccaccaaaaccctcacaaaacccacaaatcccaacacccaaaacaccgtttccacattcaagaacagcaagaacaacaacttcactctcttctttccagaatcgaagccctagaagcttctctacaccaccactctaccaatcgcgctcggtcttcggattcttactctctcagagactatgctgctcgggttattcagacccatttccgggccttccttgttcgccgatcaaggactctcaggcagctcaaagacctcgcctttatcaagtcctctttcgcctctctcaagtcttcggtttcgaaccagacccacgtcgattttcactccgtttctcagaaagcactcgctttgcttaccaagctcgactctattcagtgtggtgattcgattgttagagatgggaagaggtctataagtagaaatttagttcagttcttagagtttatcgaaggggttgttgtgaaaaggcaggcgatttgcttgaaaccagtgaagaatgtgaggtctgttcaaaatgtgaacaagtctaggggtttgggtaacaaatgtggaggtttggggagggatcagagggagatgattgggaaattgagggagaggattgagaagattcgtgggtttgctagagtttcggagaatgatgaggaggatgtggagttggaagggtttcaacatgtcagtgatgatgatgatgatgaagaaagtgtaggtcaatatcggaatggggcagcggtgaataggcatgggtttcaacctaaagtgaagaagagtgtgagctttgcagaggatgggaatgtgtttagggtctttagcaacagcgatgaggctacatcaagtggggatgggagtgattccagtgatgatcacggagagcgtgttgagaactgtagtgaagttgaggttgttaagggctttgctcaggagactgaggatgatgatgaggcgcacttagaaaatggcggatcactgcagaccagtgatgcagaaagaaaccctagagccagaatgactcagagaagaggccatggtcagggtctgaatgagcatttgttgttctcccctcctttgcctgtgaagatggattctaaagatgtggtgaaaataaacaagggtgtaaagattgtgacatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005623 GO:0005886 GO:0005911 GO:0006457 GO:0008150 GO:0009266 GO:0009506 GO:0009605 GO:0009607 GO:0009628 GO:0009987 GO:0016020 GO:0030054 GO:0043207 GO:0044464 GO:0050896 GO:0055044 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

BAG

Protein Analysis

445

Amino Acids

49.96

Weight (kDa)

7.46

Isoelectric Point (pI)

46.39

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0013047)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G29310
fragaria_vesca	FvH4_6g47270
malus_domestica	MD00G1156300.v1.1 MD09G1062500.v1.1
prunus_persica	Prupe.3G257800_v2.0.a1
pyrus_communis	pycom111g05280 pycom17g05630
rosa_chinensis	RchiOBHm_Chr2g0166341
rosa_laevigata	RLG00000021611
rosa_multiflora	Rmu_co8270777.1_g000001 Rmu_sc0030614.1_g000002
rosa_roxburghii	Rroxscaffold_2G00084970
rosa_rugosa	Rorug02G0522200
rosa_samantha	Rh2AG588300 Rh2BG600300 Rh2CG571200 Rh2DG610500
rosa_wichuraiana	Rw2G049030

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	348
AciI	CCGC	2 cut(s)	938, 1167
AclWI	GGATC	3 cut(s)	182, 780, 1177
AcsI	RAATTY	1 cut(s)	628
AfiI	CCNNNNNNNGG	3 cut(s)	411, 412, 1237
AflIII	ACRYGT	1 cut(s)	880
AgsI	TTSAA	5 cut(s)	263, 691, 719, 878, 959
AjiI	CACGTC	1 cut(s)	520
AluBI	AGCT	4 cut(s)	320, 451, 568, 984
AluI	AGCT	4 cut(s)	320, 451, 568, 984
Alw26I	GTCTC	2 cut(s)	372, 1124
AlwI	GGATC	3 cut(s)	182, 780, 1177
AlwNI	CAGNNNCTG	1 cut(s)	1243
Ama87I	CYCGRG	1 cut(s)	390
AoxI	GGCC	3 cut(s)	3, 414, 1228
ApeKI	GCWGC	5 cut(s)	66, 69, 386, 448, 935
ApoI	RAATTY	1 cut(s)	628
Asp700I	GAANNNNTTC	1 cut(s)	873
AspLEI	GCGC	2 cut(s)	350, 1153
AspS9I	GGNCC	1 cut(s)	414
AsuC2I	CCSGG	1 cut(s)	413
AsuHPI	GGTGA	5 cut(s)	17, 23, 599, 952, 1315
AsuII	TTCGAA	1 cut(s)	506
AvaI	CYCGRG	1 cut(s)	390
BarI	GAAGNNNNNNTAC	2 cut(s)	309, 341
BbsI	GAAGAC	2 cut(s)	348, 489
BbvI	GCAGC	5 cut(s)	53, 56, 373, 460, 947
BccI	CCATC	5 cut(s)	207, 599, 989, 1043, 1279
BclI	TGATCA	1 cut(s)	1069
BcnI	CCSGG	1 cut(s)	413
BcoDI	GTCTC	2 cut(s)	372, 1124
BfaI	CTAG	4 cut(s)	314, 735, 831, 1203
BfmI	CTRYAG	2 cut(s)	1093, 1175
BisI	GCNGC	5 cut(s)	67, 70, 387, 449, 936
BlsI	GCNGC	5 cut(s)	68, 71, 388, 450, 937
Bme1390I	CCNGG	1 cut(s)	413
BmeT110I	CYCGRG	1 cut(s)	390
BmgBI	CACGTC	1 cut(s)	520
BmgT120I	GGNCC	1 cut(s)	414
BmrFI	CCNGG	1 cut(s)	413
BmsI	GCATC	1 cut(s)	1177
BoxI	GACNNNNGTC	1 cut(s)	518
BpiI	GAAGAC	2 cut(s)	348, 489
Bpu10I	CCTNAGC	1 cut(s)	1125
Bpu14I	TTCGAA	1 cut(s)	506
BpuEI	CTTGAG	1 cut(s)	476
BpuMI	CCSGG	1 cut(s)	413
BsaJI	CCNNGG	1 cut(s)	1231
BsaXI	ACNNNNNCTCC	2 cut(s)	1068, 1098
Bsc4I	CCNNNNNNNGG	3 cut(s)	411, 412, 1237
Bse1I	ACTGG	3 cut(s)	695, 1062, 1182
Bse3DI	GCAATG	1 cut(s)	153
BseDI	CCNNGG	1 cut(s)	1231
BseGI	GGATG	5 cut(s)	199, 862, 1000, 1054, 1144
BseLI	CCNNNNNNNGG	3 cut(s)	411, 412, 1237
BseMI	GCAATG	1 cut(s)	153
BseMII	CTCAG	6 cut(s)	388, 457, 554, 1125, 1139, 1232
BseNI	ACTGG	3 cut(s)	695, 1062, 1182
BseRI	GAGGAG	5 cut(s)	70, 73, 76, 158, 866
BseXI	GCAGC	5 cut(s)	53, 56, 373, 460, 947
BsgI	GTGCAG	2 cut(s)	55, 82
Bsh1236I	CGCG	1 cut(s)	348
BshFI	GGCC	3 cut(s)	5, 416, 1230
BsiHKCI	CYCGRG	1 cut(s)	390
BsiSI	CCGG	1 cut(s)	412
BslI	CCNNNNNNNGG	3 cut(s)	411, 412, 1237
BsmAI	GTCTC	2 cut(s)	372, 1124
BsnI	GGCC	3 cut(s)	5, 416, 1230
BsoBI	CYCGRG	1 cut(s)	390
Bsp119I	TTCGAA	1 cut(s)	506
Bsp143I	GATC	5 cut(s)	187, 431, 772, 1069, 1169
Bsp19I	CCATGG	1 cut(s)	1231
BspACI	CCGC	2 cut(s)	938, 1167
BspANI	GGCC	3 cut(s)	5, 416, 1230
BspCNI	CTCAG	6 cut(s)	387, 456, 553, 1126, 1138, 1231
BspFNI	CGCG	1 cut(s)	348
BspMAI	CTGCAG	1 cut(s)	1179
BspPI	GGATC	3 cut(s)	182, 780, 1177
BspT104I	TTCGAA	1 cut(s)	506
BsrDI	GCAATG	1 cut(s)	153
BsrI	ACTGG	3 cut(s)	695, 1062, 1182
BssECI	CCNNGG	1 cut(s)	1231
BssMI	GATC	5 cut(s)	187, 431, 772, 1069, 1169
BssT1I	CCWWGG	1 cut(s)	1231
Bst4CI	ACNGT	2 cut(s)	251, 1094
Bst6I	CTCTTC	4 cut(s)	297, 605, 968, 1219
BstBI	TTCGAA	1 cut(s)	506
BstC8I	GCNNGC	1 cut(s)	678
BstDEI	CTNAG	8 cut(s)	374, 443, 540, 643, 1125, 1134, 1156, 1218
BstDSI	CCRYGG	1 cut(s)	1231
BstF5I	GGATG	5 cut(s)	199, 862, 1000, 1054, 1144
BstFNI	CGCG	1 cut(s)	348
BstHHI	GCGC	2 cut(s)	350, 1153
BstKTI	GATC	5 cut(s)	190, 434, 775, 1072, 1172
BstMAI	GTCTC	2 cut(s)	372, 1124
BstMBI	GATC	5 cut(s)	187, 431, 772, 1069, 1169
BstMWI	GCNNNNNNNGC	2 cut(s)	317, 565
BstNSI	RCATGY	1 cut(s)	884
BstPAI	GACNNNNGTC	1 cut(s)	518
BstSCI	CCNGG	1 cut(s)	411
BstSFI	CTRYAG	2 cut(s)	1093, 1175
BstUI	CGCG	1 cut(s)	348
BstV1I	GCAGC	5 cut(s)	53, 56, 373, 460, 947
BstV2I	GAAGAC	2 cut(s)	348, 489
BstX2I	RGATCY	1 cut(s)	187
BstYI	RGATCY	1 cut(s)	187
BsuRI	GGCC	3 cut(s)	5, 416, 1230
BtgI	CCRYGG	1 cut(s)	1231
BtgZI	GCGATG	1 cut(s)	1041
BtrI	CACGTC	1 cut(s)	520
BtsCI	GGATG	5 cut(s)	199, 862, 1000, 1054, 1144
BtsI	GCAGTG	2 cut(s)	94, 1172
BtsIMutI	CAGTG	7 cut(s)	94, 587, 702, 892, 1069, 1172, 1189
Cac8I	GCNNGC	1 cut(s)	678
CaiI	CAGNNNCTG	1 cut(s)	1243
CfoI	GCGC	2 cut(s)	350, 1153
Cfr13I	GGNCC	1 cut(s)	414
CviAII	CATG	4 cut(s)	881, 950, 1232, 1335
DdeI	CTNAG	8 cut(s)	374, 443, 540, 643, 1125, 1134, 1156, 1218
DpnI	GATC	5 cut(s)	189, 433, 774, 1071, 1171
DpnII	GATC	5 cut(s)	187, 431, 772, 1069, 1169
Eam1104I	CTCTTC	4 cut(s)	297, 605, 968, 1219
EarI	CTCTTC	4 cut(s)	297, 605, 968, 1219
EciI	GGCGGA	1 cut(s)	1182
Eco130I	CCWWGG	1 cut(s)	1231
Eco88I	CYCGRG	1 cut(s)	390
EcoT14I	CCWWGG	1 cut(s)	1231
ErhI	CCWWGG	1 cut(s)	1231
FaeI	CATG	4 cut(s)	884, 953, 1235, 1338
FaiI	YATR	6 cut(s)	384, 620, 882, 951, 1233, 1336
FatI	CATG	4 cut(s)	880, 949, 1231, 1334
FbaI	TGATCA	1 cut(s)	1069
Fnu4HI	GCNGC	5 cut(s)	67, 70, 387, 449, 936
FokI	GGATG	5 cut(s)	186, 869, 1007, 1061, 1151
Fsp4HI	GCNGC	5 cut(s)	67, 70, 387, 449, 936
FspBI	CTAG	4 cut(s)	314, 735, 831, 1203
GlaI	GCGC	2 cut(s)	349, 1152
GluI	GCNGC	5 cut(s)	67, 70, 387, 449, 936
HaeIII	GGCC	3 cut(s)	5, 416, 1230
HapII	CCGG	1 cut(s)	412
HhaI	GCGC	2 cut(s)	350, 1153
Hin1II	CATG	4 cut(s)	884, 953, 1235, 1338
Hin6I	GCGC	2 cut(s)	348, 1151
HinP1I	GCGC	2 cut(s)	348, 1151
HindIII	AAGCTT	1 cut(s)	318
HinfI	GANTC	9 cut(s)	303, 362, 439, 572, 590, 817, 1058, 1216, 1289
HpaII	CCGG	1 cut(s)	412
HphI	GGTGA	5 cut(s)	17, 23, 599, 952, 1315
Hpy166II	GTNNAC	1 cut(s)	727
Hpy188I	TCNGA	9 cut(s)	361, 377, 402, 543, 777, 841, 927, 1221, 1245
Hpy188III	TCNNGA	3 cut(s)	263, 300, 1127
Hpy8I	GTNNAC	1 cut(s)	727
Hpy99I	CGWCG	1 cut(s)	524
HpyAV	CCTTC	3 cut(s)	427, 650, 863
HpyCH4III	ACNGT	2 cut(s)	251, 1094
HpyCH4IV	ACGT	1 cut(s)	519
HpyCH4V	TGCA	5 cut(s)	72, 99, 989, 1177, 1190
HpyF10VI	GCNNNNNNNGC	2 cut(s)	317, 565
HpyF3I	CTNAG	8 cut(s)	374, 443, 540, 643, 1125, 1134, 1156, 1218
HpySE526I	ACGT	1 cut(s)	519
Hsp92II	CATG	4 cut(s)	884, 953, 1235, 1338
HspAI	GCGC	2 cut(s)	348, 1151
Ksp22I	TGATCA	1 cut(s)	1069
Kzo9I	GATC	5 cut(s)	187, 431, 772, 1069, 1169
Lsp1109I	GCAGC	5 cut(s)	53, 56, 373, 460, 947
LweI	GCATC	1 cut(s)	1177
MaeI	CTAG	4 cut(s)	314, 735, 831, 1203
MaeII	ACGT	1 cut(s)	519
MaeIII	GTNAC	2 cut(s)	746, 1330
MalI	GATC	5 cut(s)	189, 433, 774, 1071, 1171
MboI	GATC	5 cut(s)	187, 431, 772, 1069, 1169
MflI	RGATCY	1 cut(s)	187
MluCI	AATT	2 cut(s)	628, 794
MlyI	GAGTC	3 cut(s)	433, 566, 1210
MmeI	TCCRAC	1 cut(s)	846
MroXI	GAANNNNTTC	1 cut(s)	873
MseI	TTAA	1 cut(s)	1113
MslI	CAYNNNNRTG	1 cut(s)	885
MspA1I	CMGCKG	1 cut(s)	938
MspI	CCGG	1 cut(s)	412
MspR9I	CCNGG	1 cut(s)	413
MvnI	CGCG	1 cut(s)	348
MwoI	GCNNNNNNNGC	2 cut(s)	317, 565
NciI	CCSGG	1 cut(s)	413
NcoI	CCATGG	1 cut(s)	1231
NdeII	GATC	5 cut(s)	187, 431, 772, 1069, 1169
NlaIII	CATG	4 cut(s)	884, 953, 1235, 1338
NmuCI	GTSAC	1 cut(s)	1330
NspI	RCATGY	1 cut(s)	884
NspV	TTCGAA	1 cut(s)	506
PciI	ACATGT	1 cut(s)	880
PdmI	GAANNNNTTC	1 cut(s)	873
PfeI	GAWTC	6 cut(s)	303, 362, 590, 817, 1058, 1289
PkrI	GCNGC	5 cut(s)	68, 71, 388, 450, 937
PleI	GAGTC	3 cut(s)	433, 566, 1210
PpsI	GAGTC	3 cut(s)	433, 566, 1210
PscI	ACATGT	1 cut(s)	880
PshAI	GACNNNNGTC	1 cut(s)	518
PspPI	GGNCC	1 cut(s)	414
PstI	CTGCAG	1 cut(s)	1179
PstNI	CAGNNNCTG	1 cut(s)	1243
PsuI	RGATCY	1 cut(s)	187
RseI	CAYNNNNRTG	1 cut(s)	885
SaqAI	TTAA	1 cut(s)	1113
SatI	GCNGC	5 cut(s)	67, 70, 387, 449, 936
Sau3AI	GATC	5 cut(s)	187, 431, 772, 1069, 1169
Sau96I	GGNCC	1 cut(s)	414
SchI	GAGTC	3 cut(s)	433, 566, 1210
ScrFI	CCNGG	1 cut(s)	413
SfaNI	GCATC	1 cut(s)	1177
SfcI	CTRYAG	2 cut(s)	1093, 1175
SfuI	TTCGAA	1 cut(s)	506
SmiMI	CAYNNNNRTG	1 cut(s)	885
SmlI	CTYRAG	1 cut(s)	491
SmoI	CTYRAG	1 cut(s)	491
Sse9I	AATT	2 cut(s)	628, 794
SsiI	CCGC	2 cut(s)	938, 1167
SspMI	CTAG	4 cut(s)	314, 735, 831, 1203
StyD4I	CCNGG	1 cut(s)	411
StyI	CCWWGG	1 cut(s)	1231
TaaI	ACNGT	2 cut(s)	251, 1094
TaiI	ACGT	1 cut(s)	522
TaqI	TCGA	6 cut(s)	306, 506, 522, 570, 593, 654
TaqII	GACCGA	1 cut(s)	342
TasI	AATT	2 cut(s)	628, 794
TfiI	GAWTC	6 cut(s)	303, 362, 590, 817, 1058, 1289
Tru1I	TTAA	1 cut(s)	1113
Tru9I	TTAA	1 cut(s)	1113
TscAI	CASTG	7 cut(s)	101, 587, 702, 892, 1069, 1179, 1189
TseFI	GTSAC	1 cut(s)	1330
TseI	GCWGC	5 cut(s)	66, 69, 386, 448, 935
Tsp45I	GTSAC	1 cut(s)	1330
TspDTI	ATGAA	1 cut(s)	918
TspGWI	ACGGA	2 cut(s)	523, 1089
TspRI	CASTG	7 cut(s)	101, 587, 702, 892, 1069, 1179, 1189
XapI	RAATTY	1 cut(s)	628
XceI	RCATGY	1 cut(s)	884
XmnI	GAANNNNTTC	1 cut(s)	873
XspI	CTAG	4 cut(s)	314, 735, 831, 1203

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.