Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr09

Orthogroup ID

OG0009704

Physical Location & Seq

Genomic Coordinates Forward (+)

5794822 .. 5796785

Gene Structure 1964 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD09G1082700.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 753 bp

ATGAAGTCTTATAAAATCAGCAAGATGGATGTACAGAGATACAATTCAGGGCAAACCCTTGGCCATATATCTAACTACCCGGAGCTGAATCCTTTTTCACCAGGAGGGGATGGTTTACGTCGTCAAGCATTAAAATGCCCAGTAGGCTACTTGAGGGATTGGCGCAAAGGTCCTAAAGTTATCCGCTTTCGTAATTTTGTTAGGAAACTACTTAATGACTACTTAATACGTACCAATTATGGGTTCGGAGAGCTGGTATCTGATTATGCGGCTGTCGTGGAGAACCAGCTATTTATGGAGGCTACTTCTGAGGAGGAGTATGTGAATGTGGAAACATTATCTCTTCGGCTGCAAAGATTACTCAACCTATATGATCCAAACTCTAGTCAACCAGCAGGTTCTGCAGAAACACCTTCTAATTGCTTGGGTGGTGCTATTAGATCTGACTCCATTTGTAATAATGCATTCATAGCTAACAATGCTGATGATGTTAACCTCACAAAAGGGCTCCCTTTTAATGGTGATAAGCAGGGAGATACTAAAAGATTCACTACTTCCAATGAGTTGGACATGCCTTACTCGTTAGGCCTAAGGCAGGCTTCTTCTGATACTGTTCTTCCTCTTGAGGACGCTTCAACATCATTCGCTGCATATTCCAATGCCAATCAAGAGATTCGGAATTACATTTCTGACATATCATCTGATTGTCAGGTTCAACAGCAACATCTTGGCCATGGTATGGGTTTGTTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04024 ko04066 ko04068 ko04110 ko04310 ko04330 ko04350 ko04520 ko04630 ko04720 ko04916 ko04919 ko04922 ko05016 ko05152 ko05161 ko05164 ko05165 ko05166 ko05167 ko05168 ko05169 ko05200 ko05203 ko05206 ko05211 ko05215 map04024 map04066 map04068 map04110 map04310 map04330 map04350 map04520 map04630 map04720 map04916 map04919 map04922 map05016 map05152 map05161 map05164 map05165 map05166 map05167 map05168 map05169 map05200 map05203 map05206 map05211 map05215

Pfam Domains

Protein Families

HAT_KAT11 PHD ZZ zf-TAZ

Protein Analysis

251

Amino Acids

27.87

Weight (kDa)

5.68

Isoelectric Point (pI)

43.07

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009704)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g45470 FvH4_6g45470 FvH4_6g45470 FvH4_6g45470
malus_domestica	MD09G1082700.v1.1 MD09G1082800.v1.1 MD17G1073200.v1.1
prunus_persica	Prupe.3G240900_v2.0.a1 Prupe.3G240900_v2.0.a1
pyrus_communis	pycom09g00920 pycom17g07410
rosa_chinensis	RchiOBHm_Chr2g0163411
rosa_laevigata	RLG00000021391
rosa_multiflora	Rmu_ssc0000231.1_g000004
rosa_roxburghii	Rroxscaffold_2G00087360
rosa_rugosa	Rorug02G0502300 Rorug02G0502400
rosa_samantha	Rh2AG569400 Rh2BG581500 Rh2CG551300 Rh2DG591400
rosa_wichuraiana	Rw2G047120

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	12
Acc36I	ACCTGC	1 cut(s)	386
AccB7I	CCANNNNNTGG	1 cut(s)	739
AciI	CCGC	2 cut(s)	184, 269
AclWI	GGATC	1 cut(s)	368
AcoI	YGGCCR	2 cut(s)	61, 730
AfaI	GTAC	2 cut(s)	33, 232
AfiI	CCNNNNNNNGG	4 cut(s)	240, 518, 595, 739
AgsI	TTSAA	2 cut(s)	636, 716
AjnI	CCWGG	1 cut(s)	100
AjuI	GAANNNNNNNTTGG	2 cut(s)	227, 259
AluBI	AGCT	4 cut(s)	85, 253, 289, 473
AluI	AGCT	4 cut(s)	85, 253, 289, 473
AlwI	GGATC	1 cut(s)	368
AlwNI	CAGNNNCTG	1 cut(s)	401
AoxI	GGCC	3 cut(s)	61, 586, 730
ApeKI	GCWGC	2 cut(s)	349, 647
AspLEI	GCGC	1 cut(s)	165
AspS9I	GGNCC	1 cut(s)	170
AsuC2I	CCSGG	1 cut(s)	80
AsuHPI	GGTGA	2 cut(s)	90, 533
AvaII	GGWCC	1 cut(s)	170
AxyI	CCTNAGG	1 cut(s)	590
BalI	TGGCCA	2 cut(s)	63, 732
BanII	GRGCYC	1 cut(s)	510
BbvI	GCAGC	2 cut(s)	336, 634
BccI	CCATC	2 cut(s)	19, 104
BciT130I	CCWGG	1 cut(s)	102
BcnI	CCSGG	1 cut(s)	80
BfaI	CTAG	1 cut(s)	384
BfmI	CTRYAG	1 cut(s)	402
BfuAI	ACCTGC	1 cut(s)	386
BglI	GCCNNNNNGGC	1 cut(s)	144
BglII	AGATCT	1 cut(s)	440
BisI	GCNGC	3 cut(s)	270, 350, 648
BlsI	GCNGC	3 cut(s)	271, 351, 649
Bme1390I	CCNGG	2 cut(s)	80, 102
Bme18I	GGWCC	1 cut(s)	170
BmgT120I	GGNCC	1 cut(s)	170
BmiI	GGNNCC	1 cut(s)	509
BmrFI	CCNGG	2 cut(s)	80, 102
BmrI	ACTGGG	1 cut(s)	134
BmuI	ACTGGG	1 cut(s)	134
BpuEI	CTTGAG	2 cut(s)	172, 644
BpuMI	CCSGG	1 cut(s)	80
BsaAI	YACGTR	1 cut(s)	230
BsaJI	CCNNGG	2 cut(s)	58, 733
BsaXI	ACNNNNNCTCC	2 cut(s)	240, 270
Bsc4I	CCNNNNNNNGG	4 cut(s)	240, 518, 595, 739
Bse1I	ACTGG	1 cut(s)	140
Bse21I	CCTNAGG	1 cut(s)	590
BseBI	CCWGG	1 cut(s)	102
BseDI	CCNNGG	2 cut(s)	58, 733
BseGI	GGATG	2 cut(s)	34, 115
BseLI	CCNNNNNNNGG	4 cut(s)	240, 518, 595, 739
BseMII	CTCAG	1 cut(s)	300
BseNI	ACTGG	1 cut(s)	140
BseRI	GAGGAG	2 cut(s)	326, 329
BseXI	GCAGC	2 cut(s)	336, 634
BshFI	GGCC	3 cut(s)	63, 588, 732
BsiSI	CCGG	1 cut(s)	80
BslI	CCNNNNNNNGG	4 cut(s)	240, 518, 595, 739
BsmI	GAATGC	1 cut(s)	464
BsnI	GGCC	3 cut(s)	63, 588, 732
Bsp1286I	GDGCHC	1 cut(s)	510
Bsp1407I	TGTACA	1 cut(s)	31
Bsp143I	GATC	2 cut(s)	373, 440
Bsp19I	CCATGG	1 cut(s)	733
BspACI	CCGC	2 cut(s)	184, 269
BspANI	GGCC	3 cut(s)	63, 588, 732
BspCNI	CTCAG	1 cut(s)	301
BspLI	GGNNCC	1 cut(s)	509
BspMAI	CTGCAG	1 cut(s)	406
BspMI	ACCTGC	1 cut(s)	386
BspPI	GGATC	1 cut(s)	368
BsrGI	TGTACA	1 cut(s)	31
BsrI	ACTGG	1 cut(s)	140
BssECI	CCNNGG	2 cut(s)	58, 733
BssMI	GATC	2 cut(s)	373, 440
BssT1I	CCWWGG	2 cut(s)	58, 733
Bst2UI	CCWGG	1 cut(s)	102
Bst4CI	ACNGT	1 cut(s)	613
Bst6I	CTCTTC	1 cut(s)	348
BstAPI	GCANNNNNTGC	1 cut(s)	401
BstAUI	TGTACA	1 cut(s)	31
BstBAI	YACGTR	1 cut(s)	230
BstC8I	GCNNGC	1 cut(s)	597
BstDEI	CTNAG	2 cut(s)	309, 590
BstDSI	CCRYGG	1 cut(s)	733
BstENI	CCTNNNNNAGG	1 cut(s)	593
BstF5I	GGATG	2 cut(s)	34, 115
BstHHI	GCGC	1 cut(s)	165
BstKTI	GATC	2 cut(s)	376, 443
BstMBI	GATC	2 cut(s)	373, 440
BstMWI	GCNNNNNNNGC	4 cut(s)	144, 401, 470, 479
BstNI	CCWGG	1 cut(s)	102
BstNSI	RCATGY	1 cut(s)	574
BstSCI	CCNGG	2 cut(s)	78, 100
BstSFI	CTRYAG	1 cut(s)	402
BstSNI	TACGTA	1 cut(s)	230
BstV1I	GCAGC	2 cut(s)	336, 634
BstX2I	RGATCY	1 cut(s)	440
BstXI	CCANNNNNNTGG	1 cut(s)	565
BstYI	RGATCY	1 cut(s)	440
Bsu36I	CCTNAGG	1 cut(s)	590
BsuRI	GGCC	3 cut(s)	63, 588, 732
BtgI	CCRYGG	1 cut(s)	733
BtsCI	GGATG	2 cut(s)	34, 115
BveI	ACCTGC	1 cut(s)	386
Cac8I	GCNNGC	1 cut(s)	597
CaiI	CAGNNNCTG	1 cut(s)	401
CfoI	GCGC	1 cut(s)	165
Cfr13I	GGNCC	1 cut(s)	170
CseI	GACGC	1 cut(s)	638
Csp6I	GTAC	2 cut(s)	32, 231
CviAII	CATG	2 cut(s)	571, 734
CviQI	GTAC	2 cut(s)	32, 231
DdeI	CTNAG	2 cut(s)	309, 590
DpnI	GATC	2 cut(s)	375, 442
DpnII	GATC	2 cut(s)	373, 440
EaeI	YGGCCR	2 cut(s)	61, 730
Eam1104I	CTCTTC	1 cut(s)	348
EarI	CTCTTC	1 cut(s)	348
Eco105I	TACGTA	1 cut(s)	230
Eco130I	CCWWGG	2 cut(s)	58, 733
Eco147I	AGGCCT	1 cut(s)	588
Eco24I	GRGCYC	1 cut(s)	510
Eco47I	GGWCC	1 cut(s)	170
Eco81I	CCTNAGG	1 cut(s)	590
EcoNI	CCTNNNNNAGG	1 cut(s)	593
EcoO109I	RGGNCCY	1 cut(s)	170
EcoRII	CCWGG	1 cut(s)	100
EcoT14I	CCWWGG	2 cut(s)	58, 733
EcoT22I	ATGCAT	1 cut(s)	466
EcoT38I	GRGCYC	1 cut(s)	510
ErhI	CCWWGG	2 cut(s)	58, 733
FaeI	CATG	2 cut(s)	574, 737
FalI	AAGNNNNNCTT	2 cut(s)	583, 615
FatI	CATG	2 cut(s)	570, 733
Fnu4HI	GCNGC	3 cut(s)	270, 350, 648
FokI	GGATG	2 cut(s)	41, 122
FriOI	GRGCYC	1 cut(s)	510
Fsp4HI	GCNGC	3 cut(s)	270, 350, 648
FspBI	CTAG	1 cut(s)	384
GlaI	GCGC	1 cut(s)	164
GluI	GCNGC	3 cut(s)	270, 350, 648
HaeIII	GGCC	3 cut(s)	63, 588, 732
HapII	CCGG	1 cut(s)	80
HgaI	GACGC	1 cut(s)	638
HhaI	GCGC	1 cut(s)	165
Hin1II	CATG	2 cut(s)	574, 737
Hin6I	GCGC	1 cut(s)	163
HinP1I	GCGC	1 cut(s)	163
HincII	GTYRAC	2 cut(s)	389, 493
HindII	GTYRAC	2 cut(s)	389, 493
HinfI	GANTC	4 cut(s)	88, 446, 546, 673
HpaI	GTTAAC	1 cut(s)	493
HpaII	CCGG	1 cut(s)	80
HphI	GGTGA	2 cut(s)	90, 533
Hpy166II	GTNNAC	3 cut(s)	116, 389, 493
Hpy188I	TCNGA	8 cut(s)	248, 262, 310, 445, 607, 678, 691, 703
Hpy188III	TCNNGA	2 cut(s)	623, 668
Hpy8I	GTNNAC	3 cut(s)	116, 389, 493
Hpy99I	CGWCG	1 cut(s)	123
HpyAV	CCTTC	1 cut(s)	423
HpyCH4III	ACNGT	1 cut(s)	613
HpyCH4IV	ACGT	2 cut(s)	118, 229
HpyCH4V	TGCA	4 cut(s)	352, 404, 464, 650
HpyF10VI	GCNNNNNNNGC	4 cut(s)	144, 401, 470, 479
HpyF3I	CTNAG	2 cut(s)	309, 590
HpySE526I	ACGT	2 cut(s)	118, 229
Hsp92II	CATG	2 cut(s)	574, 737
HspAI	GCGC	1 cut(s)	163
KspAI	GTTAAC	1 cut(s)	493
Kzo9I	GATC	2 cut(s)	373, 440
LmnI	GCTCC	2 cut(s)	82, 513
Lsp1109I	GCAGC	2 cut(s)	336, 634
MaeI	CTAG	1 cut(s)	384
MaeII	ACGT	2 cut(s)	118, 229
MalI	GATC	2 cut(s)	375, 442
MboI	GATC	2 cut(s)	373, 440
MboII	GAAGA	3 cut(s)	335, 594, 608
MflI	RGATCY	1 cut(s)	440
MhlI	GDGCHC	1 cut(s)	510
MlsI	TGGCCA	2 cut(s)	63, 732
MluCI	AATT	5 cut(s)	43, 193, 235, 418, 679
MluNI	TGGCCA	2 cut(s)	63, 732
MlyI	GAGTC	1 cut(s)	440
MmeI	TCCRAC	1 cut(s)	546
MnlI	CCTC	8 cut(s)	98, 147, 292, 304, 307, 506, 619, 630
Mox20I	TGGCCA	2 cut(s)	63, 732
Mph1103I	ATGCAT	1 cut(s)	466
MscI	TGGCCA	2 cut(s)	63, 732
MseI	TTAA	5 cut(s)	131, 213, 224, 492, 516
MslI	CAYNNNNRTG	1 cut(s)	133
Msp20I	TGGCCA	2 cut(s)	63, 732
MspI	CCGG	1 cut(s)	80
MspR9I	CCNGG	2 cut(s)	80, 102
Mva1269I	GAATGC	1 cut(s)	464
MvaI	CCWGG	1 cut(s)	102
MwoI	GCNNNNNNNGC	4 cut(s)	144, 401, 470, 479
NciI	CCSGG	1 cut(s)	80
NcoI	CCATGG	1 cut(s)	733
NdeII	GATC	2 cut(s)	373, 440
NlaIII	CATG	2 cut(s)	574, 737
NlaIV	GGNNCC	1 cut(s)	509
NsiI	ATGCAT	1 cut(s)	466
NspI	RCATGY	1 cut(s)	574
PceI	AGGCCT	1 cut(s)	588
PctI	GAATGC	1 cut(s)	464
PfeI	GAWTC	3 cut(s)	88, 546, 673
PflMI	CCANNNNNTGG	1 cut(s)	739
PkrI	GCNGC	3 cut(s)	271, 351, 649
PleI	GAGTC	1 cut(s)	440
PpsI	GAGTC	1 cut(s)	440
Ppu21I	YACGTR	1 cut(s)	230
PpuMI	RGGWCCY	1 cut(s)	170
PsiI	TTATAA	1 cut(s)	12
Psp5II	RGGWCCY	1 cut(s)	170
Psp6I	CCWGG	1 cut(s)	100
PspGI	CCWGG	1 cut(s)	100
PspN4I	GGNNCC	1 cut(s)	509
PspPI	GGNCC	1 cut(s)	170
PspPPI	RGGWCCY	1 cut(s)	170
PstI	CTGCAG	1 cut(s)	406
PstNI	CAGNNNCTG	1 cut(s)	401
PsuI	RGATCY	1 cut(s)	440
RsaI	GTAC	2 cut(s)	33, 232
RsaNI	GTAC	2 cut(s)	32, 231
RseI	CAYNNNNRTG	1 cut(s)	133
SaqAI	TTAA	5 cut(s)	131, 213, 224, 492, 516
SatI	GCNGC	3 cut(s)	270, 350, 648
Sau3AI	GATC	2 cut(s)	373, 440
Sau96I	GGNCC	1 cut(s)	170
SchI	GAGTC	1 cut(s)	440
ScrFI	CCNGG	2 cut(s)	80, 102
SduI	GDGCHC	1 cut(s)	510
SfcI	CTRYAG	1 cut(s)	402
SinI	GGWCC	1 cut(s)	170
SmiMI	CAYNNNNRTG	1 cut(s)	133
SmlI	CTYRAG	2 cut(s)	151, 623
SmoI	CTYRAG	2 cut(s)	151, 623
SnaBI	TACGTA	1 cut(s)	230
Sse9I	AATT	5 cut(s)	43, 193, 235, 418, 679
SseBI	AGGCCT	1 cut(s)	588
SsiI	CCGC	2 cut(s)	184, 269
SspMI	CTAG	1 cut(s)	384
StuI	AGGCCT	1 cut(s)	588
StyD4I	CCNGG	2 cut(s)	78, 100
StyI	CCWWGG	2 cut(s)	58, 733
TaaI	ACNGT	1 cut(s)	613
TaiI	ACGT	2 cut(s)	121, 232
TasI	AATT	5 cut(s)	43, 193, 235, 418, 679
TatI	WGTACW	1 cut(s)	31
TauI	GCSGC	1 cut(s)	272
TfiI	GAWTC	3 cut(s)	88, 546, 673
Tru1I	TTAA	5 cut(s)	131, 213, 224, 492, 516
Tru9I	TTAA	5 cut(s)	131, 213, 224, 492, 516
TseI	GCWGC	2 cut(s)	349, 647
TspDTI	ATGAA	2 cut(s)	17, 457
Van91I	CCANNNNNTGG	1 cut(s)	739
VpaK11BI	GGWCC	1 cut(s)	170
XagI	CCTNNNNNAGG	1 cut(s)	593
XceI	RCATGY	1 cut(s)	574
XspI	CTAG	1 cut(s)	384
Zsp2I	ATGCAT	1 cut(s)	466

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.