Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0009704

Physical Location & Seq

Genomic Coordinates Reverse (-)

63464585 .. 63467792

Gene Structure 3208 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0502300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 231 bp

ATGTGGAGGGAGGATAAGGGTGTACCACTGCCAAAGTTTGGTGAATGGGACGTCAATGATCCAGCATCAGCGGAGGGGTTCACAGTAATCTTCAACAAGGCTAGGACTGAGAAAAAGACTGGTGGCAGACCTGAGTCACCATCAAAGGATGACTGCACATATAAGCATGGAGCAGTTCTCGGAAAGCCTACCACTAAAAAATGGTTTTGCTGCTTGCGTGCGGAATCGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000229 GO:0000785 GO:0000789 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005635 GO:0005652 GO:0005654 GO:0005694 GO:0005737 GO:0005829 GO:0006996 GO:0006997 GO:0008150 GO:0009987 GO:0012505 GO:0016043 GO:0031967 GO:0031974 GO:0031975 GO:0031981 GO:0032535 GO:0034399 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0065007 GO:0065008 GO:0070013 GO:0071840 GO:0090066 GO:0097298

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

76

Amino Acids

8.53

Weight (kDa)

8.86

Isoelectric Point (pI)

43.93

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AvrRpt-cleavage	PF05627	6 - 39	4.3e-20	Cleavage site for pathogenic type III effector avirulence factor Avr

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0009704)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g45470 FvH4_6g45470 FvH4_6g45470 FvH4_6g45470
malus_domestica	MD09G1082700.v1.1 MD09G1082800.v1.1 MD17G1073200.v1.1
prunus_persica	Prupe.3G240900_v2.0.a1 Prupe.3G240900_v2.0.a1
pyrus_communis	pycom09g00920 pycom17g07410
rosa_chinensis	RchiOBHm_Chr2g0163411
rosa_laevigata	RLG00000021391
rosa_multiflora	Rmu_ssc0000231.1_g000004
rosa_roxburghii	Rroxscaffold_2G00087360
rosa_rugosa	Rorug02G0502300 Rorug02G0502400
rosa_samantha	Rh2AG569400 Rh2BG581500 Rh2CG551300 Rh2DG591400
rosa_wichuraiana	Rw2G047120

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	54
AccB7I	CCANNNNNTGG	1 cut(s)	38
AciI	CCGC	2 cut(s)	71, 221
AclWI	GGATC	1 cut(s)	53
AcyI	GRCGYC	1 cut(s)	51
AfaI	GTAC	1 cut(s)	24
AfiI	CCNNNNNNNGG	1 cut(s)	38
AgsI	TTSAA	1 cut(s)	94
AlwI	GGATC	1 cut(s)	53
ApeKI	GCWGC	1 cut(s)	210
AsuHPI	GGTGA	2 cut(s)	53, 129
BbvI	GCAGC	1 cut(s)	197
BccI	CCATC	1 cut(s)	148
BfaI	CTAG	1 cut(s)	102
BisI	GCNGC	1 cut(s)	211
BlsI	GCNGC	1 cut(s)	212
BmsI	GCATC	1 cut(s)	74
BoxI	GACNNNNGTC	1 cut(s)	133
BplI	GAGNNNNNCTC	2 cut(s)	162, 194
BsaHI	GRCGYC	1 cut(s)	51
Bsc4I	CCNNNNNNNGG	1 cut(s)	38
Bse1I	ACTGG	1 cut(s)	124
BseGI	GGATG	1 cut(s)	154
BseLI	CCNNNNNNNGG	1 cut(s)	38
BseMII	CTCAG	2 cut(s)	99, 123
BseNI	ACTGG	1 cut(s)	124
BseXI	GCAGC	1 cut(s)	197
BsgI	GTGCAG	1 cut(s)	139
BslFI	GGGAC	1 cut(s)	62
BslI	CCNNNNNNNGG	1 cut(s)	38
BsmFI	GGGAC	1 cut(s)	62
Bsp143I	GATC	1 cut(s)	58
BspACI	CCGC	2 cut(s)	71, 221
BspCNI	CTCAG	2 cut(s)	100, 124
BspPI	GGATC	1 cut(s)	53
BsrI	ACTGG	1 cut(s)	124
BssMI	GATC	1 cut(s)	58
BssNI	GRCGYC	1 cut(s)	51
Bst4CI	ACNGT	1 cut(s)	85
BstACI	GRCGYC	1 cut(s)	51
BstC8I	GCNNGC	2 cut(s)	215, 219
BstDEI	CTNAG	2 cut(s)	108, 132
BstF5I	GGATG	1 cut(s)	154
BstKTI	GATC	1 cut(s)	61
BstMBI	GATC	1 cut(s)	58
BstPAI	GACNNNNGTC	1 cut(s)	133
BstV1I	GCAGC	1 cut(s)	197
BtsCI	GGATG	1 cut(s)	154
BtsI	GCAGTG	1 cut(s)	26
BtsIMutI	CAGTG	1 cut(s)	26
Cac8I	GCNNGC	2 cut(s)	215, 219
Csp6I	GTAC	1 cut(s)	23
CviAII	CATG	1 cut(s)	167
CviJI	RGCY	2 cut(s)	101, 187
CviKI_1	RGCY	2 cut(s)	101, 187
CviQI	GTAC	1 cut(s)	23
DdeI	CTNAG	2 cut(s)	108, 132
DpnI	GATC	1 cut(s)	60
DpnII	GATC	1 cut(s)	58
FaeI	CATG	1 cut(s)	170
FaiI	YATR	3 cut(s)	160, 162, 168
FaqI	GGGAC	1 cut(s)	62
FatI	CATG	1 cut(s)	166
Fnu4HI	GCNGC	1 cut(s)	211
FokI	GGATG	1 cut(s)	161
Fsp4HI	GCNGC	1 cut(s)	211
FspBI	CTAG	1 cut(s)	102
GluI	GCNGC	1 cut(s)	211
Hin1I	GRCGYC	1 cut(s)	51
Hin1II	CATG	1 cut(s)	170
HinfI	GANTC	2 cut(s)	134, 224
HphI	GGTGA	2 cut(s)	53, 129
Hpy166II	GTNNAC	2 cut(s)	23, 81
Hpy188I	TCNGA	1 cut(s)	182
Hpy188III	TCNNGA	1 cut(s)	228
Hpy8I	GTNNAC	2 cut(s)	23, 81
HpyCH4III	ACNGT	1 cut(s)	85
HpyCH4IV	ACGT	1 cut(s)	51
HpyCH4V	TGCA	1 cut(s)	156
HpyF3I	CTNAG	2 cut(s)	108, 132
HpySE526I	ACGT	1 cut(s)	51
Hsp92I	GRCGYC	1 cut(s)	51
Hsp92II	CATG	1 cut(s)	170
Kzo9I	GATC	1 cut(s)	58
LmnI	GCTCC	1 cut(s)	170
LpnPI	CCDG	3 cut(s)	75, 105, 144
Lsp1109I	GCAGC	1 cut(s)	197
LweI	GCATC	1 cut(s)	74
MaeI	CTAG	1 cut(s)	102
MaeII	ACGT	1 cut(s)	51
MaeIII	GTNAC	1 cut(s)	135
MalI	GATC	1 cut(s)	60
MboI	GATC	1 cut(s)	58
MboII	GAAGA	1 cut(s)	82
MlyI	GAGTC	1 cut(s)	143
MnlI	CCTC	2 cut(s)	4, 67
MspA1I	CMGCKG	1 cut(s)	71
NdeII	GATC	1 cut(s)	58
NlaIII	CATG	1 cut(s)	170
NmuCI	GTSAC	1 cut(s)	135
PfeI	GAWTC	1 cut(s)	224
PflMI	CCANNNNNTGG	1 cut(s)	38
PkrI	GCNGC	1 cut(s)	212
PleI	GAGTC	1 cut(s)	142
PpsI	GAGTC	1 cut(s)	142
PshAI	GACNNNNGTC	1 cut(s)	133
RsaI	GTAC	1 cut(s)	24
RsaNI	GTAC	1 cut(s)	23
SatI	GCNGC	1 cut(s)	211
Sau3AI	GATC	1 cut(s)	58
SchI	GAGTC	1 cut(s)	143
SetI	ASST	2 cut(s)	54, 133
SfaNI	GCATC	1 cut(s)	74
SgeI	CNNG	8 cut(s)	74, 109, 114, 132, 143, 179, 191, 226
SsiI	CCGC	2 cut(s)	71, 221
SspMI	CTAG	1 cut(s)	102
TaaI	ACNGT	1 cut(s)	85
TaiI	ACGT	1 cut(s)	54
TfiI	GAWTC	1 cut(s)	224
TscAI	CASTG	1 cut(s)	33
TseFI	GTSAC	1 cut(s)	135
TseI	GCWGC	1 cut(s)	210
Tsp45I	GTSAC	1 cut(s)	135
TspRI	CASTG	1 cut(s)	33
Van91I	CCANNNNNTGG	1 cut(s)	38
XspI	CTAG	1 cut(s)	102
ZraI	GACGTC	1 cut(s)	52

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.