histone acetyltransferase
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Species | Orthologous Gene IDs |
|---|---|
| fragaria_vesca | FvH4_6g45470 FvH4_6g45470 FvH4_6g45470 FvH4_6g45470 |
| malus_domestica | MD09G1082700.v1.1 MD09G1082800.v1.1 MD17G1073200.v1.1 |
| prunus_persica | Prupe.3G240900_v2.0.a1 Prupe.3G240900_v2.0.a1 |
| pyrus_communis | pycom09g00920 pycom17g07410 |
| rosa_chinensis | RchiOBHm_Chr2g0163411 |
| rosa_laevigata | RLG00000021391 |
| rosa_multiflora | Rmu_ssc0000231.1_g000004 |
| rosa_roxburghii | Rroxscaffold_2G00087360 |
| rosa_rugosa | Rorug02G0502300 Rorug02G0502400 |
| rosa_samantha | Rh2AG569400 Rh2BG581500 Rh2CG551300 Rh2DG591400 |
| rosa_wichuraiana | Rw2G047120 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 2 cut(s) | 480, 1151 |
| AasI | GACNNNNNNGTC | 1 cut(s) | 3126 |
| Acc16I | TGCGCA | 1 cut(s) | 3573 |
| Acc36I | ACCTGC | 4 cut(s) | 541, 681, 1392, 3681 |
| Acc65I | GGTACC | 1 cut(s) | 1952 |
| AccB1I | GGYRCC | 3 cut(s) | 743, 1952, 3910 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 3865 |
| AccI | GTMKAC | 1 cut(s) | 3216 |
| AccIII | TCCGGA | 1 cut(s) | 1366 |
| AciI | CCGC | 3 cut(s) | 200, 2263, 4186 |
| AclWI | GGATC | 5 cut(s) | 441, 1181, 1487, 2496, 3650 |
| AcsI | RAATTY | 6 cut(s) | 352, 1324, 2479, 2519, 3292, 4168 |
| AcuI | CTGAAG | 6 cut(s) | 369, 1002, 1131, 1443, 2659, 3060 |
| AcyI | GRCGYC | 1 cut(s) | 2353 |
| AdeI | CACNNNGTG | 1 cut(s) | 1229 |
| AfeI | AGCGCT | 1 cut(s) | 2636 |
| AflII | CTTAAG | 1 cut(s) | 1742 |
| AflIII | ACRYGT | 2 cut(s) | 3376, 3588 |
| AhdI | GACNNNNNGTC | 2 cut(s) | 3025, 4200 |
| AhlI | ACTAGT | 1 cut(s) | 1589 |
| AjnI | CCWGG | 3 cut(s) | 1643, 1768, 3896 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 1924, 1956 |
| AleI | CACNNNNGTG | 1 cut(s) | 3303 |
| Alw21I | GWGCWC | 4 cut(s) | 2179, 3384, 3755, 3815 |
| AlwI | GGATC | 5 cut(s) | 441, 1181, 1487, 2496, 3650 |
| AlwNI | CAGNNNCTG | 4 cut(s) | 292, 419, 599, 1736 |
| Ama87I | CYCGRG | 1 cut(s) | 2043 |
| Aor13HI | TCCGGA | 1 cut(s) | 1366 |
| Aor51HI | AGCGCT | 1 cut(s) | 2636 |
| AoxI | GGCC | 1 cut(s) | 3522 |
| ApoI | RAATTY | 6 cut(s) | 352, 1324, 2479, 2519, 3292, 4168 |
| Asp700I | GAANNNNTTC | 5 cut(s) | 1092, 1116, 1326, 1374, 2709 |
| Asp718I | GGTACC | 1 cut(s) | 1952 |
| AspLEI | GCGC | 5 cut(s) | 120, 1537, 1968, 2637, 3574 |
| AspS9I | GGNCC | 8 cut(s) | 125, 304, 463, 1445, 2134, 3027, 3522, 4159 |
| AsuC2I | CCSGG | 2 cut(s) | 129, 3521 |
| AsuHPI | GGTGA | 9 cut(s) | 359, 746, 1241, 1312, 2825, 3029, 3290, 3409, 3545 |
| AsuNHI | GCTAGC | 1 cut(s) | 4211 |
| AvaI | CYCGRG | 1 cut(s) | 2043 |
| AvaII | GGWCC | 7 cut(s) | 125, 304, 463, 1445, 2134, 3027, 4159 |
| AxyI | CCTNAGG | 1 cut(s) | 4163 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 3408, 3441 |
| BanI | GGYRCC | 3 cut(s) | 743, 1952, 3910 |
| BanII | GRGCYC | 3 cut(s) | 545, 3755, 3815 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 3712, 3744 |
| BbsI | GAAGAC | 1 cut(s) | 1053 |
| Bbv12I | GWGCWC | 4 cut(s) | 2179, 3384, 3755, 3815 |
| BceAI | ACGGC | 1 cut(s) | 661 |
| BcgI | CGANNNNNNTGC | 6 cut(s) | 411, 445, 2299, 2333, 3539, 3573 |
| BciT130I | CCWGG | 3 cut(s) | 1645, 1770, 3898 |
| BclI | TGATCA | 3 cut(s) | 514, 1843, 3622 |
| BcnI | CCSGG | 2 cut(s) | 129, 3521 |
| BcuI | ACTAGT | 1 cut(s) | 1589 |
| BfaI | CTAG | 6 cut(s) | 209, 444, 1590, 1760, 1991, 4212 |
| BfmI | CTRYAG | 5 cut(s) | 420, 1385, 3729, 3819, 4123 |
| BfoI | RGCGCY | 1 cut(s) | 2638 |
| BfrI | CTTAAG | 1 cut(s) | 1742 |
| BfuAI | ACCTGC | 4 cut(s) | 541, 681, 1392, 3681 |
| BglII | AGATCT | 4 cut(s) | 2302, 2425, 3627, 3872 |
| BlpI | GCTNAGC | 2 cut(s) | 2321, 3324 |
| BmcAI | AGTACT | 1 cut(s) | 2672 |
| Bme1390I | CCNGG | 5 cut(s) | 129, 1645, 1770, 3521, 3898 |
| Bme18I | GGWCC | 7 cut(s) | 125, 304, 463, 1445, 2134, 3027, 4159 |
| BmeRI | GACNNNNNGTC | 2 cut(s) | 3025, 4200 |
| BmeT110I | CYCGRG | 1 cut(s) | 2043 |
| BmgT120I | GGNCC | 8 cut(s) | 125, 304, 463, 1445, 2134, 3027, 3522, 4159 |
| BmrFI | CCNGG | 5 cut(s) | 129, 1645, 1770, 3521, 3898 |
| BmrI | ACTGGG | 2 cut(s) | 2976, 3182 |
| BmtI | GCTAGC | 1 cut(s) | 4215 |
| BmuI | ACTGGG | 2 cut(s) | 2976, 3182 |
| BoxI | GACNNNNGTC | 1 cut(s) | 3271 |
| BpiI | GAAGAC | 1 cut(s) | 1053 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 2594, 2626 |
| BpmI | CTGGAG | 4 cut(s) | 1197, 1569, 1627, 4086 |
| Bpu1102I | GCTNAGC | 2 cut(s) | 2321, 3324 |
| BpuEI | CTTGAG | 6 cut(s) | 529, 914, 1146, 1188, 2342, 3496 |
| BpuMI | CCSGG | 2 cut(s) | 129, 3521 |
| BsaHI | GRCGYC | 1 cut(s) | 2353 |
| BsaI | GGTCTC | 2 cut(s) | 198, 2253 |
| BsaJI | CCNNGG | 7 cut(s) | 730, 792, 1662, 2082, 2271, 3114, 3906 |
| BsaWI | WCCGGW | 2 cut(s) | 1366, 3913 |
| Bse1I | ACTGG | 6 cut(s) | 83, 119, 1448, 2971, 3177, 3945 |
| Bse21I | CCTNAGG | 1 cut(s) | 4163 |
| Bse3DI | GCAATG | 1 cut(s) | 873 |
| BseAI | TCCGGA | 1 cut(s) | 1366 |
| BseBI | CCWGG | 3 cut(s) | 1645, 1770, 3898 |
| BseDI | CCNNGG | 7 cut(s) | 730, 792, 1662, 2082, 2271, 3114, 3906 |
| BseGI | GGATG | 7 cut(s) | 10, 191, 958, 1710, 2209, 2836, 3409 |
| BseMI | GCAATG | 1 cut(s) | 873 |
| BseNI | ACTGG | 6 cut(s) | 83, 119, 1448, 2971, 3177, 3945 |
| BseYI | CCCAGC | 3 cut(s) | 240, 1924, 3581 |
| BsgI | GTGCAG | 5 cut(s) | 333, 2618, 3613, 3631, 4211 |
| BshFI | GGCC | 1 cut(s) | 3524 |
| BshNI | GGYRCC | 3 cut(s) | 743, 1952, 3910 |
| BsiHKAI | GWGCWC | 4 cut(s) | 2179, 3384, 3755, 3815 |
| BsiHKCI | CYCGRG | 1 cut(s) | 2043 |
| BsiSI | CCGG | 4 cut(s) | 128, 1367, 3520, 3914 |
| BsiWI | CGTACG | 1 cut(s) | 2714 |
| BslFI | GGGAC | 6 cut(s) | 449, 1458, 2784, 3132, 3215, 3279 |
| BsmBI | CGTCTC | 1 cut(s) | 3339 |
| BsmFI | GGGAC | 6 cut(s) | 449, 1458, 2784, 3132, 3215, 3279 |
| BsmI | GAATGC | 2 cut(s) | 787, 1474 |
| BsnI | GGCC | 1 cut(s) | 3524 |
| Bso31I | GGTCTC | 2 cut(s) | 198, 2253 |
| BsoBI | CYCGRG | 1 cut(s) | 2043 |
| Bsp1286I | GDGCHC | 5 cut(s) | 545, 2179, 3384, 3755, 3815 |
| Bsp13I | TCCGGA | 1 cut(s) | 1366 |
| Bsp1407I | TGTACA | 2 cut(s) | 1462, 4073 |
| Bsp1720I | GCTNAGC | 2 cut(s) | 2321, 3324 |
| Bsp19I | CCATGG | 3 cut(s) | 730, 792, 3114 |
| BspACI | CCGC | 3 cut(s) | 200, 2263, 4186 |
| BspANI | GGCC | 1 cut(s) | 3524 |
| BspEI | TCCGGA | 1 cut(s) | 1366 |
| BspHI | TCATGA | 1 cut(s) | 2497 |
| BspMAI | CTGCAG | 3 cut(s) | 424, 1389, 3823 |
| BspMI | ACCTGC | 4 cut(s) | 541, 681, 1392, 3681 |
| BspOI | GCTAGC | 1 cut(s) | 4215 |
| BspPI | GGATC | 5 cut(s) | 441, 1181, 1487, 2496, 3650 |
| BspQI | GCTCTTC | 3 cut(s) | 5, 1662, 2715 |
| BspT107I | GGYRCC | 3 cut(s) | 743, 1952, 3910 |
| BspTI | CTTAAG | 1 cut(s) | 1742 |
| BspTNI | GGTCTC | 2 cut(s) | 198, 2253 |
| BsrDI | GCAATG | 1 cut(s) | 873 |
| BsrGI | TGTACA | 2 cut(s) | 1462, 4073 |
| BsrI | ACTGG | 6 cut(s) | 83, 119, 1448, 2971, 3177, 3945 |
| BssECI | CCNNGG | 7 cut(s) | 730, 792, 1662, 2082, 2271, 3114, 3906 |
| BssNI | GRCGYC | 1 cut(s) | 2353 |
| BssT1I | CCWWGG | 7 cut(s) | 730, 792, 1662, 2082, 2271, 3114, 3906 |
| Bst2UI | CCWGG | 3 cut(s) | 1645, 1770, 3898 |
| Bst6I | CTCTTC | 5 cut(s) | 5, 1662, 1796, 2367, 2715 |
| BstACI | GRCGYC | 1 cut(s) | 2353 |
| BstAFI | CTTAAG | 1 cut(s) | 1742 |
| BstAPI | GCANNNNNTGC | 5 cut(s) | 70, 3240, 3600, 3696, 4189 |
| BstAUI | TGTACA | 2 cut(s) | 1462, 4073 |
| BstC8I | GCNNGC | 7 cut(s) | 71, 140, 1242, 2159, 3989, 4120, 4213 |
| BstDSI | CCRYGG | 3 cut(s) | 730, 792, 3114 |
| BstEII | GGTNACC | 1 cut(s) | 2744 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 1548 |
| BstF5I | GGATG | 7 cut(s) | 10, 191, 958, 1710, 2209, 2836, 3409 |
| BstH2I | RGCGCY | 1 cut(s) | 2638 |
| BstHHI | GCGC | 5 cut(s) | 120, 1537, 1968, 2637, 3574 |
| BstNI | CCWGG | 3 cut(s) | 1645, 1770, 3898 |
| BstNSI | RCATGY | 6 cut(s) | 529, 1054, 3125, 3380, 3592, 3962 |
| BstPAI | GACNNNNGTC | 1 cut(s) | 3271 |
| BstPI | GGTNACC | 1 cut(s) | 2744 |
| BstSCI | CCNGG | 5 cut(s) | 127, 1643, 1768, 3519, 3896 |
| BstSFI | CTRYAG | 5 cut(s) | 420, 1385, 3729, 3819, 4123 |
| BstV2I | GAAGAC | 1 cut(s) | 1053 |
| BstX2I | RGATCY | 8 cut(s) | 446, 1479, 2302, 2425, 2488, 3627, 3642, 3872 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 3611 |
| BstYI | RGATCY | 8 cut(s) | 446, 1479, 2302, 2425, 2488, 3627, 3642, 3872 |
| Bsu36I | CCTNAGG | 1 cut(s) | 4163 |
| BsuRI | GGCC | 1 cut(s) | 3524 |
| BtgI | CCRYGG | 3 cut(s) | 730, 792, 3114 |
| BtgZI | GCGATG | 1 cut(s) | 2166 |
| BtsCI | GGATG | 7 cut(s) | 10, 191, 958, 1710, 2209, 2836, 3409 |
| BtsI | GCAGTG | 5 cut(s) | 1975, 3030, 3238, 4147, 4222 |
| BveI | ACCTGC | 4 cut(s) | 541, 681, 1392, 3681 |
| Cac8I | GCNNGC | 7 cut(s) | 71, 140, 1242, 2159, 3989, 4120, 4213 |
| CaiI | CAGNNNCTG | 4 cut(s) | 292, 419, 599, 1736 |
| CciI | TCATGA | 1 cut(s) | 2497 |
| CfoI | GCGC | 5 cut(s) | 120, 1537, 1968, 2637, 3574 |
| Cfr13I | GGNCC | 8 cut(s) | 125, 304, 463, 1445, 2134, 3027, 3522, 4159 |
| CseI | GACGC | 3 cut(s) | 298, 2361, 2864 |
| DraIII | CACNNNGTG | 1 cut(s) | 1229 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 3126 |
| DriI | GACNNNNNGTC | 2 cut(s) | 3025, 4200 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 3126 |
| Eam1104I | CTCTTC | 5 cut(s) | 5, 1662, 1796, 2367, 2715 |
| Eam1105I | GACNNNNNGTC | 2 cut(s) | 3025, 4200 |
| EarI | CTCTTC | 5 cut(s) | 5, 1662, 1796, 2367, 2715 |
| Ecl136II | GAGCTC | 2 cut(s) | 3753, 3813 |
| Eco130I | CCWWGG | 7 cut(s) | 730, 792, 1662, 2082, 2271, 3114, 3906 |
| Eco24I | GRGCYC | 3 cut(s) | 545, 3755, 3815 |
| Eco31I | GGTCTC | 2 cut(s) | 198, 2253 |
| Eco47I | GGWCC | 7 cut(s) | 125, 304, 463, 1445, 2134, 3027, 4159 |
| Eco47III | AGCGCT | 1 cut(s) | 2636 |
| Eco53kI | GAGCTC | 2 cut(s) | 3753, 3813 |
| Eco57I | CTGAAG | 6 cut(s) | 369, 1002, 1131, 1443, 2659, 3060 |
| Eco81I | CCTNAGG | 1 cut(s) | 4163 |
| Eco88I | CYCGRG | 1 cut(s) | 2043 |
| Eco91I | GGTNACC | 1 cut(s) | 2744 |
| EcoICRI | GAGCTC | 2 cut(s) | 3753, 3813 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 1548 |
| EcoO109I | RGGNCCY | 2 cut(s) | 304, 463 |
| EcoO65I | GGTNACC | 1 cut(s) | 2744 |
| EcoRII | CCWGG | 3 cut(s) | 1643, 1768, 3896 |
| EcoT14I | CCWWGG | 7 cut(s) | 730, 792, 1662, 2082, 2271, 3114, 3906 |
| EcoT22I | ATGCAT | 1 cut(s) | 4042 |
| EcoT38I | GRGCYC | 3 cut(s) | 545, 3755, 3815 |
| ErhI | CCWWGG | 7 cut(s) | 730, 792, 1662, 2082, 2271, 3114, 3906 |
| Esp3I | CGTCTC | 1 cut(s) | 3339 |
| FalI | AAGNNNNNCTT | 4 cut(s) | 2808, 2840, 3188, 3220 |
| FaqI | GGGAC | 6 cut(s) | 449, 1458, 2784, 3132, 3215, 3279 |
| FauI | CCCGC | 2 cut(s) | 193, 4179 |
| FauNDI | CATATG | 2 cut(s) | 2222, 3741 |
| FbaI | TGATCA | 3 cut(s) | 514, 1843, 3622 |
| FblI | GTMKAC | 1 cut(s) | 3216 |
| FokI | GGATG | 7 cut(s) | 17, 198, 945, 1697, 2216, 2823, 3416 |
| FriOI | GRGCYC | 3 cut(s) | 545, 3755, 3815 |
| FspBI | CTAG | 6 cut(s) | 209, 444, 1590, 1760, 1991, 4212 |
| FspI | TGCGCA | 1 cut(s) | 3573 |
| GlaI | GCGC | 5 cut(s) | 119, 1536, 1967, 2636, 3573 |
| GsaI | CCCAGC | 3 cut(s) | 244, 1928, 3585 |
| GsuI | CTGGAG | 4 cut(s) | 1197, 1569, 1627, 4086 |
| HaeII | RGCGCY | 1 cut(s) | 2638 |
| HaeIII | GGCC | 1 cut(s) | 3524 |
| HapII | CCGG | 4 cut(s) | 128, 1367, 3520, 3914 |
| HgaI | GACGC | 3 cut(s) | 298, 2361, 2864 |
| HhaI | GCGC | 5 cut(s) | 120, 1537, 1968, 2637, 3574 |
| Hin1I | GRCGYC | 1 cut(s) | 2353 |
| Hin6I | GCGC | 5 cut(s) | 118, 1535, 1966, 2635, 3572 |
| HinP1I | GCGC | 5 cut(s) | 118, 1535, 1966, 2635, 3572 |
| HincII | GTYRAC | 2 cut(s) | 112, 3826 |
| HindII | GTYRAC | 2 cut(s) | 112, 3826 |
| HpaI | GTTAAC | 1 cut(s) | 3826 |
| HpaII | CCGG | 4 cut(s) | 128, 1367, 3520, 3914 |
| HphI | GGTGA | 9 cut(s) | 359, 746, 1241, 1312, 2825, 3029, 3290, 3409, 3545 |
| Hpy99I | CGWCG | 1 cut(s) | 1342 |
| HpyCH4IV | ACGT | 3 cut(s) | 2717, 3348, 4150 |
| HpySE526I | ACGT | 3 cut(s) | 2717, 3348, 4150 |
| Hsp92I | GRCGYC | 1 cut(s) | 2353 |
| HspAI | GCGC | 5 cut(s) | 118, 1535, 1966, 2635, 3572 |
| KflI | GGGWCCC | 1 cut(s) | 463 |
| Kpn2I | TCCGGA | 1 cut(s) | 1366 |
| KpnI | GGTACC | 1 cut(s) | 1956 |
| Ksp22I | TGATCA | 3 cut(s) | 514, 1843, 3622 |
| KspAI | GTTAAC | 1 cut(s) | 3826 |
| LguI | GCTCTTC | 3 cut(s) | 5, 1662, 2715 |
| LmnI | GCTCC | 4 cut(s) | 1111, 1573, 1646, 3728 |
| MaeI | CTAG | 6 cut(s) | 209, 444, 1590, 1760, 1991, 4212 |
| MaeII | ACGT | 3 cut(s) | 2717, 3348, 4150 |
| MfeI | CAATTG | 1 cut(s) | 1902 |
| MflI | RGATCY | 8 cut(s) | 446, 1479, 2302, 2425, 2488, 3627, 3642, 3872 |
| MhlI | GDGCHC | 5 cut(s) | 545, 2179, 3384, 3755, 3815 |
| MlyI | GAGTC | 7 cut(s) | 141, 1166, 1263, 1742, 1834, 3709, 3776 |
| MmeI | TCCRAC | 1 cut(s) | 474 |
| Mph1103I | ATGCAT | 1 cut(s) | 4042 |
| MroI | TCCGGA | 1 cut(s) | 1366 |
| MroXI | GAANNNNTTC | 5 cut(s) | 1092, 1116, 1326, 1374, 2709 |
| MslI | CAYNNNNRTG | 6 cut(s) | 3243, 3303, 3609, 3663, 3926, 4045 |
| MspA1I | CMGCKG | 2 cut(s) | 138, 4186 |
| MspCI | CTTAAG | 1 cut(s) | 1742 |
| MspI | CCGG | 4 cut(s) | 128, 1367, 3520, 3914 |
| MspR9I | CCNGG | 5 cut(s) | 129, 1645, 1770, 3521, 3898 |
| MunI | CAATTG | 1 cut(s) | 1902 |
| Mva1269I | GAATGC | 2 cut(s) | 787, 1474 |
| MvaI | CCWGG | 3 cut(s) | 1645, 1770, 3898 |
| NciI | CCSGG | 2 cut(s) | 129, 3521 |
| NcoI | CCATGG | 3 cut(s) | 730, 792, 3114 |
| NdeI | CATATG | 2 cut(s) | 2222, 3741 |
| NheI | GCTAGC | 1 cut(s) | 4211 |
| NmuCI | GTSAC | 9 cut(s) | 993, 1221, 2695, 2776, 3017, 3329, 3772, 3802, 3832 |
| NsbI | TGCGCA | 1 cut(s) | 3573 |
| NsiI | ATGCAT | 1 cut(s) | 4042 |
| NspI | RCATGY | 6 cut(s) | 529, 1054, 3125, 3380, 3592, 3962 |
| OliI | CACNNNNGTG | 1 cut(s) | 3303 |
| PaeR7I | CTCGAG | 1 cut(s) | 2043 |
| PagI | TCATGA | 1 cut(s) | 2497 |
| PciI | ACATGT | 2 cut(s) | 3376, 3588 |
| PciSI | GCTCTTC | 3 cut(s) | 5, 1662, 2715 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 3095 |
| PctI | GAATGC | 2 cut(s) | 787, 1474 |
| PdmI | GAANNNNTTC | 5 cut(s) | 1092, 1116, 1326, 1374, 2709 |
| Pfl23II | CGTACG | 1 cut(s) | 2714 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 3865 |
| PfoI | TCCNGGA | 2 cut(s) | 127, 1643 |
| PleI | GAGTC | 7 cut(s) | 140, 1165, 1262, 1741, 1833, 3709, 3776 |
| PpsI | GAGTC | 7 cut(s) | 140, 1165, 1262, 1741, 1833, 3709, 3776 |
| PpuMI | RGGWCCY | 2 cut(s) | 304, 463 |
| PscI | ACATGT | 2 cut(s) | 3376, 3588 |
| PshAI | GACNNNNGTC | 1 cut(s) | 3271 |
| PsiI | TTATAA | 2 cut(s) | 480, 1151 |
| Psp124BI | GAGCTC | 2 cut(s) | 3755, 3815 |
| Psp5II | RGGWCCY | 2 cut(s) | 304, 463 |
| Psp6I | CCWGG | 3 cut(s) | 1643, 1768, 3896 |
| PspEI | GGTNACC | 1 cut(s) | 2744 |
| PspFI | CCCAGC | 3 cut(s) | 240, 1924, 3581 |
| PspGI | CCWGG | 3 cut(s) | 1643, 1768, 3896 |
| PspLI | CGTACG | 1 cut(s) | 2714 |
| PspPI | GGNCC | 8 cut(s) | 125, 304, 463, 1445, 2134, 3027, 3522, 4159 |
| PspPPI | RGGWCCY | 2 cut(s) | 304, 463 |
| PsrI | GAACNNNNNNTAC | 2 cut(s) | 662, 694 |
| PstI | CTGCAG | 3 cut(s) | 424, 1389, 3823 |
| PstNI | CAGNNNCTG | 4 cut(s) | 292, 419, 599, 1736 |
| PsuI | RGATCY | 8 cut(s) | 446, 1479, 2302, 2425, 2488, 3627, 3642, 3872 |
| PvuII | CAGCTG | 1 cut(s) | 138 |
| RseI | CAYNNNNRTG | 6 cut(s) | 3243, 3303, 3609, 3663, 3926, 4045 |
| SacI | GAGCTC | 2 cut(s) | 3755, 3815 |
| SapI | GCTCTTC | 3 cut(s) | 5, 1662, 2715 |
| Sau96I | GGNCC | 8 cut(s) | 125, 304, 463, 1445, 2134, 3027, 3522, 4159 |
| ScaI | AGTACT | 1 cut(s) | 2672 |
| SchI | GAGTC | 7 cut(s) | 141, 1166, 1263, 1742, 1834, 3709, 3776 |
| ScrFI | CCNGG | 5 cut(s) | 129, 1645, 1770, 3521, 3898 |
| SduI | GDGCHC | 5 cut(s) | 545, 2179, 3384, 3755, 3815 |
| SfcI | CTRYAG | 5 cut(s) | 420, 1385, 3729, 3819, 4123 |
| Sfr274I | CTCGAG | 1 cut(s) | 2043 |
| SinI | GGWCC | 7 cut(s) | 125, 304, 463, 1445, 2134, 3027, 4159 |
| SlaI | CTCGAG | 1 cut(s) | 2043 |
| SmiMI | CAYNNNNRTG | 6 cut(s) | 3243, 3303, 3609, 3663, 3926, 4045 |
| SmlI | CTYRAG | 8 cut(s) | 544, 893, 1161, 1203, 1742, 2043, 2357, 3475 |
| SmoI | CTYRAG | 8 cut(s) | 544, 893, 1161, 1203, 1742, 2043, 2357, 3475 |
| SpeI | ACTAGT | 1 cut(s) | 1589 |
| SsiI | CCGC | 3 cut(s) | 200, 2263, 4186 |
| SspI | AATATT | 2 cut(s) | 1042, 3255 |
| SspMI | CTAG | 6 cut(s) | 209, 444, 1590, 1760, 1991, 4212 |
| SstI | GAGCTC | 2 cut(s) | 3755, 3815 |
| StyD4I | CCNGG | 5 cut(s) | 127, 1643, 1768, 3519, 3896 |
| StyI | CCWWGG | 7 cut(s) | 730, 792, 1662, 2082, 2271, 3114, 3906 |
| TaiI | ACGT | 3 cut(s) | 2720, 3351, 4153 |
| TaqI | TCGA | 8 cut(s) | 431, 1823, 2024, 2044, 2658, 3359, 3718, 4057 |
| TatI | WGTACW | 5 cut(s) | 1462, 1935, 2217, 2670, 4073 |
| TseFI | GTSAC | 9 cut(s) | 993, 1221, 2695, 2776, 3017, 3329, 3772, 3802, 3832 |
| Tsp45I | GTSAC | 9 cut(s) | 993, 1221, 2695, 2776, 3017, 3329, 3772, 3802, 3832 |
| TspGWI | ACGGA | 1 cut(s) | 2514 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 3865 |
| Vha464I | CTTAAG | 1 cut(s) | 1742 |
| VpaK11BI | GGWCC | 7 cut(s) | 125, 304, 463, 1445, 2134, 3027, 4159 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 1548 |
| XapI | RAATTY | 6 cut(s) | 352, 1324, 2479, 2519, 3292, 4168 |
| XceI | RCATGY | 6 cut(s) | 529, 1054, 3125, 3380, 3592, 3962 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 737 |
| XhoI | CTCGAG | 1 cut(s) | 2043 |
| XmiI | GTMKAC | 1 cut(s) | 3216 |
| XmnI | GAANNNNTTC | 5 cut(s) | 1092, 1116, 1326, 1374, 2709 |
| XspI | CTAG | 6 cut(s) | 209, 444, 1590, 1760, 1991, 4212 |
| ZrmI | AGTACT | 1 cut(s) | 2672 |
| Zsp2I | ATGCAT | 1 cut(s) | 4042 |