MD09G1116800.v1.1

lipid-A-disaccharide synthase

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr09
Physical Location & Seq
Forward (+)
8985665 .. 8988976
3312 bp
Loading structure...
UTR
Exon/CDS
Intron
MD09G1116800.v1.1.491

Sequence Viewer

Length: 1395 bp
ATGTGGTTCAGAAAATTAAGGAATGTGGATGGTGAGAATTTTGTGGGGTTTTCAAGGCTAATCAGAAGATATGCATCAGTTTCAAGCACAAGTGTGATAGACATGGCTGTTAGAGATGGGGAGCTGAGGGTTTTCATAGTCTCTGGAGAGGTTTCCGGAGACACCATTGGCTCTCGTCTCATGGCGTCTCTGAAGAATCTCTGTCCTGTTCCTGTCCGTTTTGCCGGTGTTGGAGGGTTGATGATGTCCAAGCAAGGATTAAAGTCGCTGTTTCCGATGGAGGATATTGCGGTGATGGGATTATTGGAGTTATTGCCTCATCTGAATAGGATCAGAGTGAAGCTGCTGGAGACACTAGAGGCTGCTCTTCTGTTTCAACCTCATGTTGTTGTGACAGTGGATTCAAAGGGTTTCTCTTTCCGCCTCTTAAAACAGCTACGGGCTAGATACAATCAGCAGCGAGTCGATGCTCCAGTACACTTCCACTATGTAGCACCGTCATTCTGGGCTTGGAAAGGGGGTGAAGCAAGACTCCGAGGCCTGGCTGGATTTGTGGATCATGTCTTGTGTATACTTCCAAATGAAGAAGAAGTTTGCAGATCAAATGGACTGGCTGCGACCTTTGTGGGCCACCCCATTTTGGAGGATGTTTTGGAGCTGAAATCGAAGGACACTTCACCCCATGAATGGAAGATAGAAGGAAACTGTGAAGATTTCCGAAGGAGATATGCAATACCAGCAGGAGCAAAAGTCATTTCCTTGCTTCCTGGAAGCAGATTACAAGAGGTCACCAGAATGCTTTCTATCTTCGCAAACGCTATGGGATTATTAAAAGTGTCCTTTCCTGAGTTAGTAACAGTCATCCACGTTGCTCCAAATCAGCATGTGAAGAACTATGTTGCCGGAATCGCTAACAAGTGGCCTGTGCCCTCTATATTGATTCCAGGAGGATCCCTGCACCAAAAATATGATGCATTCAGTGCAAGTAGTGTTGCATTATGTGCTTCTGGAACAGTTGCCTTGGAGATGCAGCTTGCACGGCTACCATGTGTAGTCGCTTATCGAGCTCATTTCCTAACTGAGTGGATTATTCGTTATAAGGCCAAGATACCTTACATCTCTCTCCCAAATATTCTCATGGATTCACCTATTATACCCGAAGCTCTCTTTCAAGCGTGCACTCCGACAAACCTAGCATCATTGATTTTGGGTTTGATACATGACGATGGCCTCCGAGAAAAGCAGATTGTTGCCGCTGGCAAGGTTATCAGACTTCTTTGCACTCCGGCCAGAAATTCAGATGAGTTGGTAGAGCAGCATCAAGGAGGGAGGTTTCCCCATAACACACCAAGTGTGATAGCAGCAACTGCAATACTGCACCATGCAAAGCCATAA

Protein Analysis

465

Amino Acids

51.28

Weight (kDa)

9.27

Isoelectric Point (pI)

39.52

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LpxB PF02684 44 - 438 2.8e-74 Lipid-A-disaccharide synthetase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1098
AccI GTMKAC 1 cut(s) 571
AccIII TCCGGA 1 cut(s) 155
AciI CCGC 3 cut(s) 290, 421, 1254
AclWI GGATC 4 cut(s) 338, 564, 945, 958
AcoI YGGCCR 1 cut(s) 1287
AcsI RAATTY 2 cut(s) 37, 1294
AcuI CTGAAG 1 cut(s) 212
AcyI GRCGYC 1 cut(s) 185
AdeI CACNNNGTG 1 cut(s) 1352
AfaI GTAC 1 cut(s) 477
AfiI CCNNNNNNNGG 3 cut(s) 541, 640, 687
AgsI TTSAA 5 cut(s) 54, 84, 377, 405, 1172
AjnI CCWGG 3 cut(s) 540, 766, 943
AleI CACNNNNGTG 1 cut(s) 92
AluBI AGCT 7 cut(s) 124, 343, 436, 658, 1033, 1067, 1163
AluI AGCT 7 cut(s) 124, 343, 436, 658, 1033, 1067, 1163
Alw21I GWGCWC 2 cut(s) 1069, 1181
Alw26I GTCTC 5 cut(s) 145, 153, 182, 192, 344
Alw44I GTGCAC 1 cut(s) 1177
AlwI GGATC 4 cut(s) 338, 564, 945, 958
AlwNI CAGNNNCTG 1 cut(s) 1367
Aor13HI TCCGGA 1 cut(s) 155
AoxI GGCC 6 cut(s) 538, 628, 920, 1101, 1228, 1287
ApaLI GTGCAC 1 cut(s) 1177
ApeKI GCWGC 7 cut(s) 343, 362, 457, 614, 1030, 1315, 1361
ApoI RAATTY 2 cut(s) 37, 1294
Asp700I GAANNNNTTC 1 cut(s) 799
AspS9I GGNCC 1 cut(s) 628
AsuHPI GGTGA 6 cut(s) 44, 304, 533, 669, 781, 1137
BaeGI GKGCMC 2 cut(s) 930, 1181
BamHI GGATCC 1 cut(s) 950
BanII GRGCYC 1 cut(s) 1069
Bbv12I GWGCWC 2 cut(s) 1069, 1181
BbvCI CCTCAGC 1 cut(s) 125
BbvI GCAGC 7 cut(s) 330, 349, 469, 601, 1042, 1327, 1373
BccI CCATC 5 cut(s) 23, 110, 271, 289, 1220
BceAI ACGGC 1 cut(s) 1055
BciT130I CCWGG 3 cut(s) 542, 768, 945
BcoDI GTCTC 5 cut(s) 145, 153, 182, 192, 344
BfaI CTAG 3 cut(s) 356, 444, 1193
BisI GCNGC 8 cut(s) 344, 363, 458, 615, 1031, 1254, 1316, 1362
BlsI GCNGC 8 cut(s) 345, 364, 459, 616, 1032, 1255, 1317, 1363
Bme1390I CCNGG 3 cut(s) 542, 768, 945
BmgT120I GGNCC 1 cut(s) 628
BmiI GGNNCC 1 cut(s) 952
BmrFI CCNGG 3 cut(s) 542, 768, 945
BmsI GCATC 6 cut(s) 83, 457, 961, 1017, 1205, 1327
BpmI CTGGAG 3 cut(s) 165, 368, 456
Bpu10I CCTNAGC 1 cut(s) 125
BsaBI GATNNNNATC 1 cut(s) 73
BsaHI GRCGYC 1 cut(s) 185
BsaJI CCNNGG 2 cut(s) 535, 1020
BsaWI WCCGGW 1 cut(s) 155
BsaXI ACNNNNNCTCC 2 cut(s) 735, 765
Bsc4I CCNNNNNNNGG 3 cut(s) 541, 640, 687
Bse118I RCCGGY 1 cut(s) 224
Bse1I ACTGG 2 cut(s) 473, 615
Bse8I GATNNNNATC 1 cut(s) 73
BseAI TCCGGA 1 cut(s) 155
BseBI CCWGG 3 cut(s) 542, 768, 945
BseDI CCNNGG 2 cut(s) 535, 1020
BseGI GGATG 3 cut(s) 34, 652, 861
BseJI GATNNNNATC 1 cut(s) 73
BseLI CCNNNNNNNGG 3 cut(s) 541, 640, 687
BseMII CTCAG 3 cut(s) 116, 837, 1071
BseNI ACTGG 2 cut(s) 473, 615
BseSI GKGCMC 2 cut(s) 930, 1181
BseXI GCAGC 7 cut(s) 330, 349, 469, 601, 1042, 1327, 1373
BsgI GTGCAG 2 cut(s) 941, 1361
BshFI GGCC 6 cut(s) 540, 630, 922, 1103, 1230, 1289
BsiHKAI GWGCWC 2 cut(s) 1069, 1181
BsiSI CCGG 4 cut(s) 156, 225, 903, 1286
BslI CCNNNNNNNGG 3 cut(s) 541, 640, 687
BsmAI GTCTC 5 cut(s) 145, 153, 182, 192, 344
BsmBI CGTCTC 2 cut(s) 182, 192
BsmI GAATGC 2 cut(s) 801, 974
BsnI GGCC 6 cut(s) 540, 630, 922, 1103, 1230, 1289
Bsp1286I GDGCHC 3 cut(s) 930, 1069, 1181
Bsp13I TCCGGA 1 cut(s) 155
Bsp143I GATC 4 cut(s) 330, 556, 599, 950
BspACI CCGC 3 cut(s) 290, 421, 1254
BspANI GGCC 6 cut(s) 540, 630, 922, 1103, 1230, 1289
BspCNI CTCAG 3 cut(s) 117, 838, 1072
BspEI TCCGGA 1 cut(s) 155
BspLI GGNNCC 1 cut(s) 952
BspPI GGATC 4 cut(s) 338, 564, 945, 958
BspQI GCTCTTC 1 cut(s) 372
BsrFI RCCGGY 1 cut(s) 224
BsrI ACTGG 2 cut(s) 473, 615
BssAI RCCGGY 1 cut(s) 224
BssECI CCNNGG 2 cut(s) 535, 1020
BssMI GATC 4 cut(s) 330, 556, 599, 950
BssNAI GTATAC 1 cut(s) 572
BssNI GRCGYC 1 cut(s) 185
BssT1I CCWWGG 1 cut(s) 1020
Bst1107I GTATAC 1 cut(s) 572
Bst2UI CCWGG 3 cut(s) 542, 768, 945
Bst4CI ACNGT 5 cut(s) 397, 498, 707, 859, 1015
Bst6I CTCTTC 1 cut(s) 372
BstACI GRCGYC 1 cut(s) 185
BstAPI GCANNNNNTGC 3 cut(s) 980, 1001, 1367
BstC8I GCNNGC 3 cut(s) 1035, 1177, 1258
BstDEI CTNAG 3 cut(s) 125, 846, 1080
BstEII GGTNACC 1 cut(s) 787
BstF5I GGATG 3 cut(s) 34, 652, 861
BstKTI GATC 4 cut(s) 333, 559, 602, 953
BstMAI GTCTC 5 cut(s) 145, 153, 182, 192, 344
BstMBI GATC 4 cut(s) 330, 556, 599, 950
BstMWI GCNNNNNNNGC 7 cut(s) 737, 908, 980, 1001, 1039, 1064, 1367
BstNI CCWGG 3 cut(s) 542, 768, 945
BstNSI RCATGY 1 cut(s) 887
BstPI GGTNACC 1 cut(s) 787
BstSCI CCNGG 3 cut(s) 540, 766, 943
BstSLI GKGCMC 2 cut(s) 930, 1181
BstV1I GCAGC 7 cut(s) 330, 349, 469, 601, 1042, 1327, 1373
BstX2I RGATCY 1 cut(s) 950
BstYI RGATCY 1 cut(s) 950
BstZ17I GTATAC 1 cut(s) 572
BsuRI GGCC 6 cut(s) 540, 630, 922, 1103, 1230, 1289
BtsCI GGATG 3 cut(s) 34, 652, 861
BtsIMutI CAGTG 2 cut(s) 402, 985
Cac8I GCNNGC 3 cut(s) 1035, 1177, 1258
CaiI CAGNNNCTG 1 cut(s) 1367
Cfr10I RCCGGY 1 cut(s) 224
Cfr13I GGNCC 1 cut(s) 628
CseI GACGC 1 cut(s) 174
Csp6I GTAC 1 cut(s) 476
CviQI GTAC 1 cut(s) 476
DdeI CTNAG 3 cut(s) 125, 846, 1080
DpnI GATC 4 cut(s) 332, 558, 601, 952
DpnII GATC 4 cut(s) 330, 556, 599, 950
DraIII CACNNNGTG 1 cut(s) 1352
EaeI YGGCCR 1 cut(s) 1287
Eam1104I CTCTTC 1 cut(s) 372
EarI CTCTTC 1 cut(s) 372
EciI GGCGGA 1 cut(s) 410
Ecl136II GAGCTC 1 cut(s) 1067
Eco130I CCWWGG 1 cut(s) 1020
Eco147I AGGCCT 1 cut(s) 540
Eco24I GRGCYC 1 cut(s) 1069
Eco53kI GAGCTC 1 cut(s) 1067
Eco57I CTGAAG 1 cut(s) 212
Eco91I GGTNACC 1 cut(s) 787
EcoICRI GAGCTC 1 cut(s) 1067
EcoO65I GGTNACC 1 cut(s) 787
EcoRII CCWGG 3 cut(s) 540, 766, 943
EcoT14I CCWWGG 1 cut(s) 1020
EcoT22I ATGCAT 2 cut(s) 76, 976
EcoT38I GRGCYC 1 cut(s) 1069
ErhI CCWWGG 1 cut(s) 1020
Esp3I CGTCTC 2 cut(s) 182, 192
FblI GTMKAC 1 cut(s) 571
Fnu4HI GCNGC 8 cut(s) 344, 363, 458, 615, 1031, 1254, 1316, 1362
FokI GGATG 3 cut(s) 41, 659, 848
FriOI GRGCYC 1 cut(s) 1069
Fsp4HI GCNGC 8 cut(s) 344, 363, 458, 615, 1031, 1254, 1316, 1362
FspBI CTAG 3 cut(s) 356, 444, 1193
GluI GCNGC 8 cut(s) 344, 363, 458, 615, 1031, 1254, 1316, 1362
GsuI CTGGAG 3 cut(s) 165, 368, 456
HaeIII GGCC 6 cut(s) 540, 630, 922, 1103, 1230, 1289
HapII CCGG 4 cut(s) 156, 225, 903, 1286
HgaI GACGC 1 cut(s) 174
Hin1I GRCGYC 1 cut(s) 185
HinfI GANTC 7 cut(s) 196, 401, 462, 531, 906, 940, 1142
HpaII CCGG 4 cut(s) 156, 225, 903, 1286
HphI GGTGA 6 cut(s) 44, 304, 533, 669, 781, 1137
Hpy166II GTNNAC 3 cut(s) 478, 572, 1179
Hpy188III TCNNGA 4 cut(s) 144, 156, 845, 1008
Hpy8I GTNNAC 3 cut(s) 478, 572, 1179
HpyAV CCTTC 3 cut(s) 661, 692, 714
HpyCH4III ACNGT 5 cut(s) 397, 498, 707, 859, 1015
HpyCH4IV ACGT 1 cut(s) 867
HpyF10VI GCNNNNNNNGC 7 cut(s) 737, 908, 980, 1001, 1039, 1064, 1367
HpyF3I CTNAG 3 cut(s) 125, 846, 1080
HpySE526I ACGT 1 cut(s) 867
Hsp92I GRCGYC 1 cut(s) 185
Kpn2I TCCGGA 1 cut(s) 155
Kzo9I GATC 4 cut(s) 330, 556, 599, 950
LguI GCTCTTC 1 cut(s) 372
LmnI GCTCC 5 cut(s) 121, 475, 655, 743, 877
Lsp1109I GCAGC 7 cut(s) 330, 349, 469, 601, 1042, 1327, 1373
LweI GCATC 6 cut(s) 83, 457, 961, 1017, 1205, 1327
MaeI CTAG 3 cut(s) 356, 444, 1193
MaeII ACGT 1 cut(s) 867
MaeIII GTNAC 3 cut(s) 391, 787, 853
MalI GATC 4 cut(s) 332, 558, 601, 952
MboI GATC 4 cut(s) 330, 556, 599, 950
MboII GAAGA 9 cut(s) 78, 205, 359, 596, 599, 703, 722, 799, 901
MflI RGATCY 1 cut(s) 950
MhlI GDGCHC 3 cut(s) 930, 1069, 1181
MluCI AATT 3 cut(s) 14, 37, 1294
MlyI GAGTC 2 cut(s) 471, 525
MmeI TCCRAC 2 cut(s) 211, 1208
Mph1103I ATGCAT 2 cut(s) 76, 976
MroI TCCGGA 1 cut(s) 155
MroXI GAANNNNTTC 1 cut(s) 799
MseI TTAA 4 cut(s) 17, 260, 428, 830
MslI CAYNNNNRTG 3 cut(s) 92, 794, 1224
MspA1I CMGCKG 1 cut(s) 1256
MspI CCGG 4 cut(s) 156, 225, 903, 1286
MspR9I CCNGG 3 cut(s) 542, 768, 945
Mva1269I GAATGC 2 cut(s) 801, 974
MvaI CCWGG 3 cut(s) 542, 768, 945
MwoI GCNNNNNNNGC 7 cut(s) 737, 908, 980, 1001, 1039, 1064, 1367
NdeII GATC 4 cut(s) 330, 556, 599, 950
NlaIV GGNNCC 1 cut(s) 952
NmuCI GTSAC 2 cut(s) 391, 787
NsiI ATGCAT 2 cut(s) 76, 976
NspI RCATGY 1 cut(s) 887
OliI CACNNNNGTG 1 cut(s) 92
PceI AGGCCT 1 cut(s) 540
PciSI GCTCTTC 1 cut(s) 372
PcsI WCGNNNNNNNCGW 1 cut(s) 272
PctI GAATGC 2 cut(s) 801, 974
PdmI GAANNNNTTC 1 cut(s) 799
PfeI GAWTC 5 cut(s) 196, 401, 906, 940, 1142
PfoI TCCNGGA 2 cut(s) 766, 943
PkrI GCNGC 8 cut(s) 345, 364, 459, 616, 1032, 1255, 1317, 1363
PleI GAGTC 2 cut(s) 470, 525
PpsI GAGTC 2 cut(s) 470, 525
PsiI TTATAA 1 cut(s) 1098
Psp124BI GAGCTC 1 cut(s) 1069
Psp6I CCWGG 3 cut(s) 540, 766, 943
PspEI GGTNACC 1 cut(s) 787
PspGI CCWGG 3 cut(s) 540, 766, 943
PspN4I GGNNCC 1 cut(s) 952
PspPI GGNCC 1 cut(s) 628
PstNI CAGNNNCTG 1 cut(s) 1367
PsuI RGATCY 1 cut(s) 950
RsaI GTAC 1 cut(s) 477
RsaNI GTAC 1 cut(s) 476
RseI CAYNNNNRTG 3 cut(s) 92, 794, 1224
SacI GAGCTC 1 cut(s) 1069
SapI GCTCTTC 1 cut(s) 372
SaqAI TTAA 4 cut(s) 17, 260, 428, 830
SatI GCNGC 8 cut(s) 344, 363, 458, 615, 1031, 1254, 1316, 1362
Sau3AI GATC 4 cut(s) 330, 556, 599, 950
Sau96I GGNCC 1 cut(s) 628
SchI GAGTC 2 cut(s) 471, 525
ScrFI CCNGG 3 cut(s) 542, 768, 945
SduI GDGCHC 3 cut(s) 930, 1069, 1181
SfaNI GCATC 6 cut(s) 83, 457, 961, 1017, 1205, 1327
SmiMI CAYNNNNRTG 3 cut(s) 92, 794, 1224
Sse9I AATT 3 cut(s) 14, 37, 1294
SseBI AGGCCT 1 cut(s) 540
SsiI CCGC 3 cut(s) 290, 421, 1254
SspI AATATT 1 cut(s) 1132
SspMI CTAG 3 cut(s) 356, 444, 1193
SstI GAGCTC 1 cut(s) 1069
StuI AGGCCT 1 cut(s) 540
StyD4I CCNGG 3 cut(s) 540, 766, 943
StyI CCWWGG 1 cut(s) 1020
TaaI ACNGT 5 cut(s) 397, 498, 707, 859, 1015
TaiI ACGT 1 cut(s) 870
TaqI TCGA 3 cut(s) 465, 665, 1063
TasI AATT 3 cut(s) 14, 37, 1294
TatI WGTACW 1 cut(s) 475
TauI GCSGC 1 cut(s) 1256
TfiI GAWTC 5 cut(s) 196, 401, 906, 940, 1142
Tru1I TTAA 4 cut(s) 17, 260, 428, 830
Tru9I TTAA 4 cut(s) 17, 260, 428, 830
TscAI CASTG 2 cut(s) 402, 985
TseFI GTSAC 2 cut(s) 391, 787
TseI GCWGC 7 cut(s) 343, 362, 457, 614, 1030, 1315, 1361
Tsp45I GTSAC 2 cut(s) 391, 787
TspDTI ATGAA 3 cut(s) 124, 597, 699
TspGWI ACGGA 1 cut(s) 206
TspRI CASTG 2 cut(s) 402, 985
VneI GTGCAC 1 cut(s) 1177
XapI RAATTY 2 cut(s) 37, 1294
XceI RCATGY 1 cut(s) 887
XmiI GTMKAC 1 cut(s) 571
XmnI GAANNNNTTC 1 cut(s) 799
XspI CTAG 3 cut(s) 356, 444, 1193
Zsp2I ATGCAT 2 cut(s) 76, 976
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.