Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0005140

Physical Location & Seq

Genomic Coordinates Reverse (-)

59415227 .. 59417290

Gene Structure 2064 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0462900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 507 bp

ATGGCAAGGTCTCTCTCCCAAACCCTGACCCTCACCCGCCACCTCTCCCCCAAAACGTCGTCGTCTTTTATAACCCTCCGCGCCCAATCCAACCTCCCCTTCCACTATGACCAATCCGATCCCGCCGCCGCCGACTCCGTCGATCCCCTCCTCCGCAAGCTCGAGGACGCCATCCACCGCATCATCGTCCGCAAGTCCGCCCCCGATTGGCTCCCCTTCGTCCCCGGCGCCTCCTACTGGGTCCCGCCGCCGCGGTCCAGATCCCACGGCCTCGCCCAGCTCGTCGAGAAGCTCGCCAATCCCTTGACCGAGGAGGAGTCCATGTCCATGACCACCGTTCGCGGCTGGCCTTCCTCCGCTTATTTCATTCAAGGTTCACCTCCACTGATGGAGGTCTTTGTTGCGAAATCTGATAATGGGGAGTCTGATAATGCGGAGCAAAGGTTGGATACTGCTGATCATAAGTCGGATAATGCACCCAATTCTGAGGAGGAGGAAGAAGGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005488 GO:0005543 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005829 GO:0005975 GO:0006040 GO:0006629 GO:0006643 GO:0006644 GO:0006664 GO:0006793 GO:0006796 GO:0008150 GO:0008152 GO:0008194 GO:0008289 GO:0008610 GO:0008654 GO:0008915 GO:0009058 GO:0009245 GO:0009247 GO:0009311 GO:0009312 GO:0009987 GO:0016051 GO:0016740 GO:0016757 GO:0016758 GO:0019637 GO:0043167 GO:0043168 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044424 GO:0044444 GO:0044464 GO:0046467 GO:0046493 GO:0071704 GO:0090407 GO:1901135 GO:1901137 GO:1901269 GO:1901271 GO:1901576 GO:1903509 GO:2001289

KEGG Pathways

Metabolic & Signaling

ko00540 ko01100 map00540 map01100

Pfam Domains

Protein Families

LpxB

Protein Analysis

168

Amino Acids

18.6

Weight (kDa)

5.06

Isoelectric Point (pI)

73.33

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005140)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G04560
fragaria_vesca	FvH4_6g41870 FvH4_6g41870 FvH4_6g41870 FvH4_6g41870 FvH4_6g41870 FvH4_6g41870
malus_domestica	MD09G1116800.v1.1
prunus_persica	Prupe.3G208000_v2.0.a1 Prupe.3G208000_v2.0.a1 Prupe.3G208000_v2.0.a1 Prupe.3G208000_v2.0.a1 Prupe.3G208000_v2.0.a1
pyrus_communis	pycom09g04140 pycom17g10060
rosa_chinensis	RchiOBHm_Chr2g0157701 RchiOBHm_Chr2g0157711
rosa_laevigata	RLG00000021009
rosa_multiflora	Rmu_sc0001275.1_g000003
rosa_roxburghii	Rroxscaffold_2G00092020
rosa_rugosa	Rorug02G0462900
rosa_samantha	Rh2AG527200 Rh2AG527300 Rh2BG542000 Rh2BG542100 Rh2CG511700 Rh2CG511800 Rh2DG550600 Rh2DG550700
rosa_wichuraiana	Rw2G043660

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	71
AccB1I	GGYRCC	1 cut(s)	227
AccII	CGCG	3 cut(s)	81, 253, 342
AclWI	GGATC	3 cut(s)	113, 137, 255
AcyI	GRCGYC	2 cut(s)	168, 228
AfiI	CCNNNNNNNGG	2 cut(s)	207, 237
AgsI	TTSAA	1 cut(s)	371
AjuI	GAANNNNNNNTTGG	2 cut(s)	83, 115
AluBI	AGCT	3 cut(s)	160, 280, 292
AluI	AGCT	3 cut(s)	160, 280, 292
Alw26I	GTCTC	1 cut(s)	15
AlwI	GGATC	3 cut(s)	113, 137, 255
Ama87I	CYCGRG	1 cut(s)	161
AoxI	GGCC	2 cut(s)	268, 347
AspLEI	GCGC	2 cut(s)	83, 230
AspS9I	GGNCC	2 cut(s)	241, 255
AsuC2I	CCSGG	1 cut(s)	225
AsuHPI	GGTGA	2 cut(s)	25, 369
AvaI	CYCGRG	1 cut(s)	161
AvaII	GGWCC	2 cut(s)	241, 255
BanI	GGYRCC	1 cut(s)	227
BccI	CCATC	2 cut(s)	179, 382
BceAI	ACGGC	1 cut(s)	283
BciVI	GTATCC	1 cut(s)	442
BclI	TGATCA	1 cut(s)	457
BcnI	CCSGG	1 cut(s)	225
BcoDI	GTCTC	1 cut(s)	15
BfoI	RGCGCY	1 cut(s)	231
BfuI	GTATCC	1 cut(s)	442
BisI	GCNGC	5 cut(s)	126, 129, 248, 251, 343
BlsI	GCNGC	5 cut(s)	127, 130, 249, 252, 344
Bme1390I	CCNGG	1 cut(s)	225
Bme18I	GGWCC	2 cut(s)	241, 255
BmeT110I	CYCGRG	1 cut(s)	161
BmgT120I	GGNCC	2 cut(s)	241, 255
BmiI	GGNNCC	4 cut(s)	212, 229, 242, 243
BmrFI	CCNGG	1 cut(s)	225
BmrI	ACTGGG	1 cut(s)	247
BmsI	GCATC	1 cut(s)	189
BmuI	ACTGGG	1 cut(s)	247
BpuMI	CCSGG	1 cut(s)	225
BsaHI	GRCGYC	2 cut(s)	168, 228
BsaI	GGTCTC	1 cut(s)	15
BsaJI	CCNNGG	4 cut(s)	223, 251, 265, 309
BsaXI	ACNNNNNCTCC	4 cut(s)	308, 338, 428, 458
Bsc4I	CCNNNNNNNGG	2 cut(s)	207, 237
Bse1I	ACTGG	1 cut(s)	242
BseDI	CCNNGG	4 cut(s)	223, 251, 265, 309
BseGI	GGATG	1 cut(s)	171
BseLI	CCNNNNNNNGG	2 cut(s)	207, 237
BseMII	CTCAG	1 cut(s)	477
BseNI	ACTGG	1 cut(s)	242
BseRI	GAGGAG	5 cut(s)	140, 326, 329, 503, 506
BseYI	CCCAGC	1 cut(s)	276
Bsh1236I	CGCG	3 cut(s)	81, 253, 342
BshFI	GGCC	2 cut(s)	270, 349
BshNI	GGYRCC	1 cut(s)	227
BsiHKCI	CYCGRG	1 cut(s)	161
BsiSI	CCGG	1 cut(s)	225
BslFI	GGGAC	2 cut(s)	206, 227
BslI	CCNNNNNNNGG	2 cut(s)	207, 237
BsmAI	GTCTC	1 cut(s)	15
BsmFI	GGGAC	2 cut(s)	206, 227
BsnI	GGCC	2 cut(s)	270, 349
Bso31I	GGTCTC	1 cut(s)	15
BsoBI	CYCGRG	1 cut(s)	161
Bsp143I	GATC	4 cut(s)	118, 142, 260, 457
BspANI	GGCC	2 cut(s)	270, 349
BspCNI	CTCAG	1 cut(s)	478
BspFNI	CGCG	3 cut(s)	81, 253, 342
BspLI	GGNNCC	4 cut(s)	212, 229, 242, 243
BspPI	GGATC	3 cut(s)	113, 137, 255
BspT107I	GGYRCC	1 cut(s)	227
BspTNI	GGTCTC	1 cut(s)	15
BsrI	ACTGG	1 cut(s)	242
BssECI	CCNNGG	4 cut(s)	223, 251, 265, 309
BssMI	GATC	4 cut(s)	118, 142, 260, 457
BssNI	GRCGYC	2 cut(s)	168, 228
Bst4CI	ACNGT	1 cut(s)	337
BstACI	GRCGYC	2 cut(s)	168, 228
BstC8I	GCNNGC	3 cut(s)	158, 294, 347
BstDEI	CTNAG	1 cut(s)	486
BstDSI	CCRYGG	2 cut(s)	251, 265
BstF5I	GGATG	1 cut(s)	171
BstFNI	CGCG	3 cut(s)	81, 253, 342
BstH2I	RGCGCY	1 cut(s)	231
BstHHI	GCGC	2 cut(s)	83, 230
BstKTI	GATC	4 cut(s)	121, 145, 263, 460
BstMAI	GTCTC	1 cut(s)	15
BstMBI	GATC	4 cut(s)	118, 142, 260, 457
BstSCI	CCNGG	1 cut(s)	223
BstUI	CGCG	3 cut(s)	81, 253, 342
BstX2I	RGATCY	1 cut(s)	260
BstYI	RGATCY	1 cut(s)	260
BsuI	GTATCC	1 cut(s)	442
BsuRI	GGCC	2 cut(s)	270, 349
BtgI	CCRYGG	2 cut(s)	251, 265
BtsCI	GGATG	1 cut(s)	171
BtsIMutI	CAGTG	1 cut(s)	383
Cac8I	GCNNGC	3 cut(s)	158, 294, 347
CfoI	GCGC	2 cut(s)	83, 230
Cfr13I	GGNCC	2 cut(s)	241, 255
Cfr42I	CCGCGG	1 cut(s)	254
CseI	GACGC	1 cut(s)	176
CviAII	CATG	2 cut(s)	322, 328
CviJI	RGCY	7 cut(s)	160, 211, 270, 280, 292, 345, 349
CviKI_1	RGCY	7 cut(s)	160, 211, 270, 280, 292, 345, 349
DdeI	CTNAG	1 cut(s)	486
DinI	GGCGCC	1 cut(s)	229
DpnI	GATC	4 cut(s)	120, 144, 262, 459
DpnII	GATC	4 cut(s)	118, 142, 260, 457
EciI	GGCGGA	1 cut(s)	187
Eco31I	GGTCTC	1 cut(s)	15
Eco47I	GGWCC	2 cut(s)	241, 255
Eco88I	CYCGRG	1 cut(s)	161
EcoO109I	RGGNCCY	1 cut(s)	241
EgeI	GGCGCC	1 cut(s)	229
EheI	GGCGCC	1 cut(s)	229
FaeI	CATG	2 cut(s)	325, 331
FaiI	YATR	5 cut(s)	71, 108, 323, 329, 462
FaqI	GGGAC	2 cut(s)	206, 227
FatI	CATG	2 cut(s)	321, 327
FauI	CCCGC	3 cut(s)	44, 130, 252
FbaI	TGATCA	1 cut(s)	457
Fnu4HI	GCNGC	5 cut(s)	126, 129, 248, 251, 343
FokI	GGATG	1 cut(s)	158
Fsp4HI	GCNGC	5 cut(s)	126, 129, 248, 251, 343
GlaI	GCGC	2 cut(s)	82, 229
GluI	GCNGC	5 cut(s)	126, 129, 248, 251, 343
GsaI	CCCAGC	1 cut(s)	280
HaeII	RGCGCY	1 cut(s)	231
HaeIII	GGCC	2 cut(s)	270, 349
HapII	CCGG	1 cut(s)	225
HgaI	GACGC	1 cut(s)	176
HhaI	GCGC	2 cut(s)	83, 230
Hin1I	GRCGYC	2 cut(s)	168, 228
Hin1II	CATG	2 cut(s)	325, 331
Hin6I	GCGC	2 cut(s)	81, 228
HinP1I	GCGC	2 cut(s)	81, 228
HinfI	GANTC	3 cut(s)	134, 317, 422
HpaII	CCGG	1 cut(s)	225
HphI	GGTGA	2 cut(s)	25, 369
Hpy166II	GTNNAC	1 cut(s)	377
Hpy188I	TCNGA	5 cut(s)	118, 412, 427, 469, 487
Hpy188III	TCNNGA	2 cut(s)	258, 286
Hpy8I	GTNNAC	1 cut(s)	377
Hpy99I	CGWCG	4 cut(s)	61, 64, 143, 287
HpyAV	CCTTC	4 cut(s)	109, 226, 360, 494
HpyCH4III	ACNGT	1 cut(s)	337
HpyCH4IV	ACGT	1 cut(s)	56
HpyCH4V	TGCA	1 cut(s)	476
HpyF3I	CTNAG	1 cut(s)	486
HpySE526I	ACGT	1 cut(s)	56
Hsp92I	GRCGYC	2 cut(s)	168, 228
Hsp92II	CATG	2 cut(s)	325, 331
HspAI	GCGC	2 cut(s)	81, 228
KasI	GGCGCC	1 cut(s)	227
KflI	GGGWCCC	1 cut(s)	241
Ksp22I	TGATCA	1 cut(s)	457
KspI	CCGCGG	1 cut(s)	254
Kzo9I	GATC	4 cut(s)	118, 142, 260, 457
LmnI	GCTCC	2 cut(s)	216, 436
LpnPI	CCDG	6 cut(s)	38, 223, 238, 271, 290, 331
LweI	GCATC	1 cut(s)	189
MaeII	ACGT	1 cut(s)	56
MalI	GATC	4 cut(s)	120, 144, 262, 459
MboI	GATC	4 cut(s)	118, 142, 260, 457
MflI	RGATCY	1 cut(s)	260
MluCI	AATT	1 cut(s)	481
Mly113I	GGCGCC	1 cut(s)	228
MlyI	GAGTC	3 cut(s)	128, 326, 431
MmeI	TCCRAC	3 cut(s)	114, 426, 447
MslI	CAYNNNNRTG	1 cut(s)	326
MspA1I	CMGCKG	1 cut(s)	253
MspI	CCGG	1 cut(s)	225
MspR9I	CCNGG	1 cut(s)	225
MvnI	CGCG	3 cut(s)	81, 253, 342
NarI	GGCGCC	1 cut(s)	228
NciI	CCSGG	1 cut(s)	225
NdeII	GATC	4 cut(s)	118, 142, 260, 457
NlaIII	CATG	2 cut(s)	325, 331
NlaIV	GGNNCC	4 cut(s)	212, 229, 242, 243
PaeR7I	CTCGAG	1 cut(s)	161
PcsI	WCGNNNNNNNCGW	1 cut(s)	279
PflFI	GACNNNGTC	1 cut(s)	137
PkrI	GCNGC	5 cut(s)	127, 130, 249, 252, 344
PleI	GAGTC	3 cut(s)	128, 325, 430
PluTI	GGCGCC	1 cut(s)	231
PpsI	GAGTC	3 cut(s)	128, 325, 430
PpuMI	RGGWCCY	1 cut(s)	241
PsiI	TTATAA	1 cut(s)	71
Psp5II	RGGWCCY	1 cut(s)	241
PspFI	CCCAGC	1 cut(s)	276
PspN4I	GGNNCC	4 cut(s)	212, 229, 242, 243
PspPI	GGNCC	2 cut(s)	241, 255
PspPPI	RGGWCCY	1 cut(s)	241
PspXI	VCTCGAGB	1 cut(s)	161
PsuI	RGATCY	1 cut(s)	260
PsyI	GACNNNGTC	1 cut(s)	137
RseI	CAYNNNNRTG	1 cut(s)	326
SacII	CCGCGG	1 cut(s)	254
SatI	GCNGC	5 cut(s)	126, 129, 248, 251, 343
Sau3AI	GATC	4 cut(s)	118, 142, 260, 457
Sau96I	GGNCC	2 cut(s)	241, 255
SchI	GAGTC	3 cut(s)	128, 326, 431
ScrFI	CCNGG	1 cut(s)	225
SfaNI	GCATC	1 cut(s)	189
SfoI	GGCGCC	1 cut(s)	229
Sfr274I	CTCGAG	1 cut(s)	161
Sfr303I	CCGCGG	1 cut(s)	254
SgrBI	CCGCGG	1 cut(s)	254
SinI	GGWCC	2 cut(s)	241, 255
SlaI	CTCGAG	1 cut(s)	161
SmiMI	CAYNNNNRTG	1 cut(s)	326
SmlI	CTYRAG	1 cut(s)	161
SmoI	CTYRAG	1 cut(s)	161
Sse9I	AATT	1 cut(s)	481
SspDI	GGCGCC	1 cut(s)	227
StyD4I	CCNGG	1 cut(s)	223
TaaI	ACNGT	1 cut(s)	337
TaiI	ACGT	1 cut(s)	59
TaqI	TCGA	3 cut(s)	141, 162, 285
TaqII	GACCGA	1 cut(s)	323
TasI	AATT	1 cut(s)	481
TauI	GCSGC	5 cut(s)	128, 131, 250, 253, 345
TscAI	CASTG	1 cut(s)	390
TspDTI	ATGAA	1 cut(s)	355
TspGWI	ACGGA	1 cut(s)	127
TspRI	CASTG	1 cut(s)	390
Tth111I	GACNNNGTC	1 cut(s)	137
VpaK11BI	GGWCC	2 cut(s)	241, 255
XhoI	CTCGAG	1 cut(s)	161

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.