Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2B

Orthogroup ID

OG0005140

Physical Location & Seq

Genomic Coordinates Reverse (-)

74981035 .. 74981939

Gene Structure 905 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2BG542100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 483 bp

ATGTGGTTCAGAAAAATATGGAATGTGGATGGTGGGAATATTGTTGGATGCTCAAGGTTGATGAGAAGATACACATCAGCCTCAAGCAGACGTGTATTAGACATGGCTGCTAAAGATGGGGAGCTGAGGGTCTTCATAGTTTCTGGAGAGGTTTCTGGCGACACCATTGGCTTTCGTCTGATGGCATCTCTAAAGAAGCTCTCTCCTGTTCCAGTCCGCTTTTCTGGTGTTGGAGGGACTATGATGTCCAATCAAGGATTAAAATCTGTATTTCCTATGGAGGATATTGCAGTGATGGGATTGTTGGAGTTATTGCCTCATCTAAATAAACTCAGACTGAAGTTGCAGGAGACATTAGAAGCTGCTCTTCTGTTTCAACCTCATGTTGTTGTAACAGTGGATTCCAAGGGATTCTCTTTCCGTCTTCTAAAGCAGTTACGGGGTAATATAAACTACCTTCTTGGAGTTCTAGTCATCCTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005488 GO:0005543 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005829 GO:0005975 GO:0006040 GO:0006629 GO:0006643 GO:0006644 GO:0006664 GO:0006793 GO:0006796 GO:0008150 GO:0008152 GO:0008194 GO:0008289 GO:0008610 GO:0008654 GO:0008915 GO:0009058 GO:0009245 GO:0009247 GO:0009311 GO:0009312 GO:0009987 GO:0016051 GO:0016740 GO:0016757 GO:0016758 GO:0019637 GO:0043167 GO:0043168 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044424 GO:0044444 GO:0044464 GO:0046467 GO:0046493 GO:0071704 GO:0090407 GO:1901135 GO:1901137 GO:1901269 GO:1901271 GO:1901576 GO:1903509 GO:2001289

KEGG Pathways

Metabolic & Signaling

ko00540 ko01100 map00540 map01100

Pfam Domains

Protein Families

LpxB

Protein Analysis

160

Amino Acids

17.79

Weight (kDa)

10.22

Isoelectric Point (pI)

40.29

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
LpxB	PF02684	44 - 149	3e-22	Lipid-A-disaccharide synthetase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0005140)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G04560
fragaria_vesca	FvH4_6g41870 FvH4_6g41870 FvH4_6g41870 FvH4_6g41870 FvH4_6g41870 FvH4_6g41870
malus_domestica	MD09G1116800.v1.1
prunus_persica	Prupe.3G208000_v2.0.a1 Prupe.3G208000_v2.0.a1 Prupe.3G208000_v2.0.a1 Prupe.3G208000_v2.0.a1 Prupe.3G208000_v2.0.a1
pyrus_communis	pycom09g04140 pycom17g10060
rosa_chinensis	RchiOBHm_Chr2g0157701 RchiOBHm_Chr2g0157711
rosa_laevigata	RLG00000021009
rosa_multiflora	Rmu_sc0001275.1_g000003
rosa_roxburghii	Rroxscaffold_2G00092020
rosa_rugosa	Rorug02G0462900
rosa_samantha	Rh2AG527200 Rh2AG527300 Rh2BG542000 Rh2BG542100 Rh2CG511700 Rh2CG511800 Rh2DG550600 Rh2DG550700
rosa_wichuraiana	Rw2G043660

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	244
AciI	CCGC	1 cut(s)	217
AcuI	CTGAAG	1 cut(s)	359
AflIII	ACRYGT	1 cut(s)	91
AgsI	TTSAA	1 cut(s)	377
AjiI	CACGTC	1 cut(s)	92
AluBI	AGCT	3 cut(s)	124, 199, 362
AluI	AGCT	3 cut(s)	124, 199, 362
Alw26I	GTCTC	1 cut(s)	344
ApeKI	GCWGC	2 cut(s)	107, 362
BbsI	GAAGAC	2 cut(s)	124, 416
BbvCI	CCTCAGC	1 cut(s)	125
BbvI	GCAGC	2 cut(s)	94, 349
BccI	CCATC	4 cut(s)	23, 110, 175, 289
BcoDI	GTCTC	1 cut(s)	344
BfaI	CTAG	1 cut(s)	470
BisI	GCNGC	2 cut(s)	108, 363
BlsI	GCNGC	2 cut(s)	109, 364
BmgBI	CACGTC	1 cut(s)	92
BmsI	GCATC	2 cut(s)	38, 194
BpiI	GAAGAC	2 cut(s)	124, 416
BpmI	CTGGAG	1 cut(s)	165
Bpu10I	CCTNAGC	1 cut(s)	125
BpuEI	CTTGAG	2 cut(s)	37, 67
BsaBI	GATNNNNATC	2 cut(s)	73, 262
BsaJI	CCNNGG	1 cut(s)	405
BsaXI	ACNNNNNCTCC	1 cut(s)	456
Bse1I	ACTGG	1 cut(s)	212
Bse8I	GATNNNNATC	2 cut(s)	73, 262
BseDI	CCNNGG	1 cut(s)	405
BseGI	GGATG	3 cut(s)	34, 53, 474
BseJI	GATNNNNATC	2 cut(s)	73, 262
BseMII	CTCAG	2 cut(s)	116, 346
BseNI	ACTGG	1 cut(s)	212
BseXI	GCAGC	2 cut(s)	94, 349
BslFI	GGGAC	1 cut(s)	250
BsmAI	GTCTC	1 cut(s)	344
BsmFI	GGGAC	1 cut(s)	250
BspACI	CCGC	1 cut(s)	217
BspCNI	CTCAG	2 cut(s)	117, 345
BspQI	GCTCTTC	1 cut(s)	372
BsrI	ACTGG	1 cut(s)	212
BssECI	CCNNGG	1 cut(s)	405
BssT1I	CCWWGG	1 cut(s)	405
Bst4CI	ACNGT	1 cut(s)	397
Bst6I	CTCTTC	1 cut(s)	372
BstDEI	CTNAG	2 cut(s)	125, 332
BstF5I	GGATG	3 cut(s)	34, 53, 474
BstMAI	GTCTC	1 cut(s)	344
BstV1I	GCAGC	2 cut(s)	94, 349
BstV2I	GAAGAC	2 cut(s)	124, 416
BtrI	CACGTC	1 cut(s)	92
BtsCI	GGATG	3 cut(s)	34, 53, 474
BtsI	GCAGTG	1 cut(s)	297
BtsIMutI	CAGTG	2 cut(s)	297, 402
CviAII	CATG	2 cut(s)	103, 383
CviJI	RGCY	6 cut(s)	80, 107, 124, 171, 199, 362
CviKI_1	RGCY	6 cut(s)	80, 107, 124, 171, 199, 362
DdeI	CTNAG	2 cut(s)	125, 332
DrdI	GACNNNNNNGTC	1 cut(s)	244
DseDI	GACNNNNNNGTC	1 cut(s)	244
Eam1104I	CTCTTC	1 cut(s)	372
EarI	CTCTTC	1 cut(s)	372
Eco130I	CCWWGG	1 cut(s)	405
Eco57I	CTGAAG	1 cut(s)	359
EcoT14I	CCWWGG	1 cut(s)	405
ErhI	CCWWGG	1 cut(s)	405
FaeI	CATG	2 cut(s)	106, 386
FaiI	YATR	7 cut(s)	19, 104, 137, 242, 278, 384, 449
FalI	AAGNNNNNCTT	2 cut(s)	351, 383
FaqI	GGGAC	1 cut(s)	250
FatI	CATG	2 cut(s)	102, 382
Fnu4HI	GCNGC	2 cut(s)	108, 363
FokI	GGATG	3 cut(s)	41, 60, 461
Fsp4HI	GCNGC	2 cut(s)	108, 363
FspBI	CTAG	1 cut(s)	470
GluI	GCNGC	2 cut(s)	108, 363
GsuI	CTGGAG	1 cut(s)	165
Hin1II	CATG	2 cut(s)	106, 386
HinfI	GANTC	2 cut(s)	401, 411
Hpy188I	TCNGA	3 cut(s)	11, 180, 335
Hpy188III	TCNNGA	1 cut(s)	144
HpyAV	CCTTC	1 cut(s)	467
HpyCH4III	ACNGT	1 cut(s)	397
HpyCH4IV	ACGT	1 cut(s)	91
HpyCH4V	TGCA	2 cut(s)	290, 346
HpyF3I	CTNAG	2 cut(s)	125, 332
HpySE526I	ACGT	1 cut(s)	91
Hsp92II	CATG	2 cut(s)	106, 386
LguI	GCTCTTC	1 cut(s)	372
LmnI	GCTCC	1 cut(s)	121
LpnPI	CCDG	6 cut(s)	129, 141, 210, 219, 225, 332
Lsp1109I	GCAGC	2 cut(s)	94, 349
LweI	GCATC	2 cut(s)	38, 194
MaeI	CTAG	1 cut(s)	470
MaeII	ACGT	1 cut(s)	91
MaeIII	GTNAC	2 cut(s)	391, 435
MboII	GAAGA	4 cut(s)	78, 124, 359, 416
MmeI	TCCRAC	3 cut(s)	25, 211, 285
MnlI	CCTC	7 cut(s)	91, 120, 142, 227, 274, 327, 390
MseI	TTAA	1 cut(s)	260
NlaIII	CATG	2 cut(s)	106, 386
PciSI	GCTCTTC	1 cut(s)	372
PfeI	GAWTC	2 cut(s)	401, 411
PkrI	GCNGC	2 cut(s)	109, 364
SapI	GCTCTTC	1 cut(s)	372
SaqAI	TTAA	1 cut(s)	260
SatI	GCNGC	2 cut(s)	108, 363
SetI	ASST	8 cut(s)	59, 94, 126, 153, 201, 364, 382, 459
SfaNI	GCATC	2 cut(s)	38, 194
SmlI	CTYRAG	2 cut(s)	52, 82
SmoI	CTYRAG	2 cut(s)	52, 82
SsiI	CCGC	1 cut(s)	217
SspI	AATATT	1 cut(s)	40
SspMI	CTAG	1 cut(s)	470
StyI	CCWWGG	1 cut(s)	405
TaaI	ACNGT	1 cut(s)	397
TaiI	ACGT	1 cut(s)	94
TfiI	GAWTC	2 cut(s)	401, 411
Tru1I	TTAA	1 cut(s)	260
Tru9I	TTAA	1 cut(s)	260
TscAI	CASTG	2 cut(s)	297, 402
TseI	GCWGC	2 cut(s)	107, 362
TspDTI	ATGAA	1 cut(s)	124
TspGWI	ACGGA	1 cut(s)	410
TspRI	CASTG	2 cut(s)	297, 402
XspI	CTAG	1 cut(s)	470

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.