Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr09

Orthogroup ID

OG0015277

Physical Location & Seq

Genomic Coordinates Forward (+)

9003632 .. 9007569

Gene Structure 3938 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD09G1117200.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1419 bp

ATGGCCATTGTTGGCGCTTTGAAGAAAACAATGGCGTCTCCCCCTTGGCGCAATCTCTTCAGTCGTCGCATGTCCTCGTTTTTCTTCGACCCCCCTCCTCCTCTTCGTTCTCGCAGAGTCGTCGTCACTGGGTTGGGCATGGTGACGCCATTGGGCTGCGGAGTGGAGACGACGTGGAAGAGACTCATAGAAGGCGAGTGCGGCATAAGGGCACTGACCCATCAAGATATCAAGATGAACGGCTTTGATTCAGACACCCAATCGTACACCTTCGACCAGCTCACCTCCAAAGTTGCTGCAATCGTACCCTGTGGAACCGAACCAGGTGAATTCAACGAGGAACTGTGGCTCAATTCCAAGGATCATCGTTCAATGGCGAGATTTATTGGGTATGCAATGTGTGCTGCTGAAGAAGCACTTAAAGATGCTAATTGGATGCCTACTGAGCCCGAAGAGAGGGAAAGAACGGGTGTCTCAGTTGGTGGGGGAACTGGAAGTATCAGTGACATATTGGATGCTGCACAAATGATTTGTGAGAAGCGTATTCGACGTCTTAGTCCTTTCTTCATTCCTCGGATACTAATCAACATGGCATCTGGTCATATCAGCATGAAATATGGATTTCAGGGACCAAATCATGCTGCAGTAACAGCTTGTGCTACTGGAGCACATTCTCTGGGTGATGCCACAAGGATGATTCAGTTTGGAGATTCAGATGTTATGGTGGCTGGAGGCACAGAGTCTAGCATTGATGCTTTATCAATAGCAGGATTTTGCAAGTCAAGGGCCTTGACCACGAAATACAATTCCTCCCCACAAGAAGCATCACGACCTTTTGACTGTGGTCGGGATGGGTTTGTAATCGGTGAAGGTTCTGGTGTTGTGGTTTTGGAGGAGCTTGAGCATGCAAAGAATCGAGGAGCAAAAATATATGCAGAAATTCGTGGTTATGGCATGTCAGGTGATGCGTATCATATTACTCAACCACATACTGATGGAAGAGGTGCCATTCTGGCCATGACACATGCCCTTAGACAGTCAGGCCTTCATCCTAAACAAGTGGATTATGTAAATGCACATGCTACGTCGACACCTTTGGGTGATGCAATAGAAGCCAATGCTATCAAAACCATTTTCTCTGACCATGTGACATCAGGTGCTTTAGCATTGTCCTCCACCAAGGGAGCTGTTGGTCATCTCCTTGGTGCGGCTGGAGCTGTTGAAGCAATATTTTCTATTTTGGCCATACACCATGGAATTGCACCACCAACGCTTAATCTGTCACAACCAGATCCAGTATTTAAGGATGCTTTCATGCCTCTGACAACTTCAAAGACCATGCCAATAAGAGCAGCTTTGTCAAACTCTTTTGGCTTCGGAGGAACAAATGCATCCCTGTTGTTTACATCTGCTCCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0006996 GO:0008150 GO:0009657 GO:0009668 GO:0009987 GO:0010027 GO:0016043 GO:0061024 GO:0071840

KEGG Pathways

Metabolic & Signaling

ko00061 ko00780 ko01100 ko01212 map00061 map00780 map01100 map01212

Pfam Domains

Protein Families

Ketoacyl-synt_C ketoacyl-synt

Protein Analysis

473

Amino Acids

50.38

Weight (kDa)

6.73

Isoelectric Point (pI)

47.24

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ketoacyl-synt	PF00109	38 - 303	5.1e-54	Beta-ketoacyl synthase, N-terminal domain
Ketoacyl-synt_C	PF02801	311 - 427	1.6e-39	Beta-ketoacyl synthase, C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0015277)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G04540
fragaria_vesca	FvH4_6g41780
malus_domestica	MD09G1117200.v1.1
prunus_persica	Prupe.3G206600_v2.0.a1 Prupe.3G206600_v2.0.a1
pyrus_communis	pycom09g04220
rosa_chinensis	RchiOBHm_Chr2g0157571
rosa_laevigata	RLG00000020999
rosa_multiflora	Rmu_sc0000195.1_g000042
rosa_roxburghii	Rroxscaffold_2G00092110
rosa_rugosa	Rorug02G0462200
rosa_samantha	Rh2AG526300 Rh2BG541000 Rh2CG511000 Rh2DG549500
rosa_wichuraiana	Rw2G043590

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	555
AatII	GACGTC	1 cut(s)	553
AccB1I	GGYRCC	1 cut(s)	1004
AccI	GTMKAC	1 cut(s)	1088
AciI	CCGC	3 cut(s)	159, 201, 1208
AclWI	GGATC	2 cut(s)	369, 1286
AcoI	YGGCCR	3 cut(s)	3, 1014, 1242
AcsI	RAATTY	2 cut(s)	329, 939
AcuI	CTGAAG	2 cut(s)	43, 429
AcyI	GRCGYC	3 cut(s)	35, 146, 550
AfaI	GTAC	2 cut(s)	266, 306
AfiI	CCNNNNNNNGG	2 cut(s)	456, 1207
AgsI	TTSAA	5 cut(s)	22, 334, 372, 1223, 1332
AjiI	CACGTC	1 cut(s)	174
AjnI	CCWGG	1 cut(s)	322
AluBI	AGCT	6 cut(s)	280, 653, 898, 1187, 1217, 1355
AluI	AGCT	6 cut(s)	280, 653, 898, 1187, 1217, 1355
Alw21I	GWGCWC	1 cut(s)	670
Alw26I	GTCTC	4 cut(s)	42, 161, 175, 478
AlwI	GGATC	2 cut(s)	369, 1286
AoxI	GGCC	5 cut(s)	3, 786, 1014, 1042, 1242
ApeKI	GCWGC	6 cut(s)	156, 296, 404, 518, 641, 1352
ApoI	RAATTY	2 cut(s)	329, 939
AspLEI	GCGC	2 cut(s)	17, 51
AspS9I	GGNCC	2 cut(s)	629, 786
AsuHPI	GGTGA	7 cut(s)	154, 274, 338, 692, 878, 974, 1112
AvaII	GGWCC	1 cut(s)	629
BaeGI	GKGCMC	1 cut(s)	214
BalI	TGGCCA	3 cut(s)	5, 1016, 1244
BanI	GGYRCC	1 cut(s)	1004
BanII	GRGCYC	1 cut(s)	450
Bbv12I	GWGCWC	1 cut(s)	670
BbvI	GCAGC	6 cut(s)	143, 283, 391, 505, 628, 1364
BccI	CCATC	3 cut(s)	228, 845, 989
BceAI	ACGGC	1 cut(s)	256
BcgI	CGANNNNNNTGC	2 cut(s)	103, 137
BciT130I	CCWGG	1 cut(s)	324
BciVI	GTATCC	1 cut(s)	570
BcoDI	GTCTC	4 cut(s)	42, 161, 175, 478
BfaI	CTAG	1 cut(s)	744
BfmI	CTRYAG	1 cut(s)	642
BfoI	RGCGCY	1 cut(s)	18
BfuI	GTATCC	1 cut(s)	570
BglI	GCCNNNNNGGC	1 cut(s)	1013
BisI	GCNGC	8 cut(s)	157, 202, 297, 405, 519, 642, 1209, 1353
BlsI	GCNGC	8 cut(s)	158, 203, 298, 406, 520, 643, 1210, 1354
Bme1390I	CCNGG	1 cut(s)	324
Bme18I	GGWCC	1 cut(s)	629
BmgBI	CACGTC	1 cut(s)	174
BmgT120I	GGNCC	2 cut(s)	629, 786
BmiI	GGNNCC	3 cut(s)	316, 630, 1006
BmrFI	CCNGG	1 cut(s)	324
BmrI	ACTGGG	1 cut(s)	138
BmuI	ACTGGG	1 cut(s)	138
BoxI	GACNNNNGTC	1 cut(s)	843
BpmI	CTGGAG	3 cut(s)	684, 750, 1233
BpuEI	CTTGAG	1 cut(s)	920
BsaBI	GATNNNNATC	2 cut(s)	581, 969
BsaHI	GRCGYC	3 cut(s)	35, 146, 550
BsaJI	CCNNGG	6 cut(s)	44, 357, 572, 1179, 1201, 1252
BsaXI	ACNNNNNCTCC	5 cut(s)	158, 188, 794, 824, 1396
Bsc4I	CCNNNNNNNGG	2 cut(s)	456, 1207
Bse1I	ACTGG	4 cut(s)	133, 496, 667, 1295
Bse3DI	GCAATG	1 cut(s)	402
Bse8I	GATNNNNATC	2 cut(s)	581, 969
BseBI	CCWGG	1 cut(s)	324
BseDI	CCNNGG	6 cut(s)	44, 357, 572, 1179, 1201, 1252
BseGI	GGATG	7 cut(s)	441, 520, 699, 856, 1048, 1312, 1391
BseJI	GATNNNNATC	2 cut(s)	581, 969
BseLI	CCNNNNNNNGG	2 cut(s)	456, 1207
BseMI	GCAATG	1 cut(s)	402
BseMII	CTCAG	2 cut(s)	435, 489
BseNI	ACTGG	4 cut(s)	133, 496, 667, 1295
BseRI	GAGGAG	4 cut(s)	87, 90, 908, 933
BseSI	GKGCMC	1 cut(s)	214
BseXI	GCAGC	6 cut(s)	143, 283, 391, 505, 628, 1364
BsgI	GTGCAG	1 cut(s)	504
BshFI	GGCC	5 cut(s)	5, 788, 1016, 1044, 1244
BshNI	GGYRCC	1 cut(s)	1004
BsiHKAI	GWGCWC	1 cut(s)	670
BslFI	GGGAC	1 cut(s)	642
BslI	CCNNNNNNNGG	2 cut(s)	456, 1207
BsmAI	GTCTC	4 cut(s)	42, 161, 175, 478
BsmBI	CGTCTC	2 cut(s)	42, 161
BsmFI	GGGAC	1 cut(s)	642
BsnI	GGCC	5 cut(s)	5, 788, 1016, 1044, 1244
Bsp1286I	GDGCHC	3 cut(s)	214, 450, 670
Bsp143I	GATC	2 cut(s)	361, 1291
Bsp19I	CCATGG	1 cut(s)	1252
BspACI	CCGC	3 cut(s)	159, 201, 1208
BspANI	GGCC	5 cut(s)	5, 788, 1016, 1044, 1244
BspCNI	CTCAG	2 cut(s)	436, 488
BspLI	GGNNCC	3 cut(s)	316, 630, 1006
BspMAI	CTGCAG	1 cut(s)	646
BspPI	GGATC	2 cut(s)	369, 1286
BspT107I	GGYRCC	1 cut(s)	1004
BsrDI	GCAATG	1 cut(s)	402
BsrI	ACTGG	4 cut(s)	133, 496, 667, 1295
BssECI	CCNNGG	6 cut(s)	44, 357, 572, 1179, 1201, 1252
BssMI	GATC	2 cut(s)	361, 1291
BssNI	GRCGYC	3 cut(s)	35, 146, 550
BssT1I	CCWWGG	5 cut(s)	44, 357, 1179, 1201, 1252
Bst2UI	CCWGG	1 cut(s)	324
Bst4CI	ACNGT	3 cut(s)	345, 842, 1038
Bst6I	CTCTTC	5 cut(s)	62, 108, 173, 447, 994
BstACI	GRCGYC	3 cut(s)	35, 146, 550
BstAPI	GCANNNNNTGC	1 cut(s)	401
BstC8I	GCNNGC	1 cut(s)	906
BstDEI	CTNAG	4 cut(s)	444, 475, 554, 1031
BstDSI	CCRYGG	1 cut(s)	1252
BstF5I	GGATG	7 cut(s)	441, 520, 699, 856, 1048, 1312, 1391
BstH2I	RGCGCY	1 cut(s)	18
BstHHI	GCGC	2 cut(s)	17, 51
BstKTI	GATC	2 cut(s)	364, 1294
BstMAI	GTCTC	4 cut(s)	42, 161, 175, 478
BstMBI	GATC	2 cut(s)	361, 1291
BstNI	CCWGG	1 cut(s)	324
BstNSI	RCATGY	5 cut(s)	73, 908, 958, 1028, 1082
BstPAI	GACNNNNGTC	1 cut(s)	843
BstSCI	CCNGG	1 cut(s)	322
BstSFI	CTRYAG	1 cut(s)	642
BstSLI	GKGCMC	1 cut(s)	214
BstV1I	GCAGC	6 cut(s)	143, 283, 391, 505, 628, 1364
BstX2I	RGATCY	1 cut(s)	1291
BstYI	RGATCY	1 cut(s)	1291
BsuI	GTATCC	1 cut(s)	570
BsuRI	GGCC	5 cut(s)	5, 788, 1016, 1044, 1244
BtgI	CCRYGG	1 cut(s)	1252
BtrI	CACGTC	1 cut(s)	174
BtsCI	GGATG	7 cut(s)	441, 520, 699, 856, 1048, 1312, 1391
BtsIMutI	CAGTG	3 cut(s)	126, 212, 508
Cac8I	GCNNGC	1 cut(s)	906
CfoI	GCGC	2 cut(s)	17, 51
Cfr13I	GGNCC	2 cut(s)	629, 786
CseI	GACGC	2 cut(s)	24, 154
CsiI	ACCWGGT	1 cut(s)	322
Csp6I	GTAC	2 cut(s)	265, 305
CviQI	GTAC	2 cut(s)	265, 305
DdeI	CTNAG	4 cut(s)	444, 475, 554, 1031
DpnI	GATC	2 cut(s)	363, 1293
DpnII	GATC	2 cut(s)	361, 1291
DrdI	GACNNNNNNGTC	1 cut(s)	555
DseDI	GACNNNNNNGTC	1 cut(s)	555
EaeI	YGGCCR	3 cut(s)	3, 1014, 1242
Eam1104I	CTCTTC	5 cut(s)	62, 108, 173, 447, 994
EarI	CTCTTC	5 cut(s)	62, 108, 173, 447, 994
Eco130I	CCWWGG	5 cut(s)	44, 357, 1179, 1201, 1252
Eco147I	AGGCCT	1 cut(s)	1044
Eco24I	GRGCYC	1 cut(s)	450
Eco32I	GATATC	1 cut(s)	229
Eco47I	GGWCC	1 cut(s)	629
Eco57I	CTGAAG	2 cut(s)	43, 429
EcoO109I	RGGNCCY	1 cut(s)	786
EcoRI	GAATTC	1 cut(s)	329
EcoRII	CCWGG	1 cut(s)	322
EcoRV	GATATC	1 cut(s)	229
EcoT14I	CCWWGG	5 cut(s)	44, 357, 1179, 1201, 1252
EcoT22I	ATGCAT	1 cut(s)	1393
EcoT38I	GRGCYC	1 cut(s)	450
ErhI	CCWWGG	5 cut(s)	44, 357, 1179, 1201, 1252
Esp3I	CGTCTC	2 cut(s)	42, 161
FalI	AAGNNNNNCTT	4 cut(s)	402, 434, 1339, 1371
FaqI	GGGAC	1 cut(s)	642
FblI	GTMKAC	1 cut(s)	1088
Fnu4HI	GCNGC	8 cut(s)	157, 202, 297, 405, 519, 642, 1209, 1353
FokI	GGATG	7 cut(s)	448, 527, 706, 863, 1035, 1319, 1378
FriOI	GRGCYC	1 cut(s)	450
Fsp4HI	GCNGC	8 cut(s)	157, 202, 297, 405, 519, 642, 1209, 1353
FspBI	CTAG	1 cut(s)	744
GlaI	GCGC	2 cut(s)	16, 50
GluI	GCNGC	8 cut(s)	157, 202, 297, 405, 519, 642, 1209, 1353
GsuI	CTGGAG	3 cut(s)	684, 750, 1233
HaeII	RGCGCY	1 cut(s)	18
HaeIII	GGCC	5 cut(s)	5, 788, 1016, 1044, 1244
HgaI	GACGC	2 cut(s)	24, 154
HhaI	GCGC	2 cut(s)	17, 51
Hin1I	GRCGYC	3 cut(s)	35, 146, 550
Hin6I	GCGC	2 cut(s)	15, 49
HinP1I	GCGC	2 cut(s)	15, 49
HincII	GTYRAC	1 cut(s)	1089
HindII	GTYRAC	1 cut(s)	1089
HinfI	GANTC	7 cut(s)	117, 183, 248, 697, 710, 740, 913
HphI	GGTGA	7 cut(s)	154, 274, 338, 692, 878, 974, 1112
Hpy166II	GTNNAC	3 cut(s)	267, 1089, 1404
Hpy188I	TCNGA	6 cut(s)	253, 576, 715, 1141, 1323, 1379
Hpy188III	TCNNGA	4 cut(s)	224, 232, 828, 848
Hpy8I	GTNNAC	3 cut(s)	267, 1089, 1404
Hpy99I	CGWCG	5 cut(s)	69, 125, 175, 552, 1090
HpyAV	CCTTC	4 cut(s)	185, 280, 863, 1055
HpyCH4III	ACNGT	3 cut(s)	345, 842, 1038
HpyCH4IV	ACGT	3 cut(s)	173, 550, 1085
HpyF3I	CTNAG	4 cut(s)	444, 475, 554, 1031
HpySE526I	ACGT	3 cut(s)	173, 550, 1085
Hsp92I	GRCGYC	3 cut(s)	35, 146, 550
HspAI	GCGC	2 cut(s)	15, 49
Kzo9I	GATC	2 cut(s)	361, 1291
LmnI	GCTCC	6 cut(s)	665, 895, 920, 1184, 1214, 1417
Lsp1109I	GCAGC	6 cut(s)	143, 283, 391, 505, 628, 1364
MabI	ACCWGGT	1 cut(s)	322
MaeI	CTAG	1 cut(s)	744
MaeII	ACGT	3 cut(s)	173, 550, 1085
MaeIII	GTNAC	6 cut(s)	124, 142, 503, 646, 1147, 1281
MalI	GATC	2 cut(s)	363, 1293
MboI	GATC	2 cut(s)	361, 1291
MboII	GAAGA	9 cut(s)	34, 49, 76, 95, 190, 422, 464, 556, 1011
MflI	RGATCY	1 cut(s)	1291
MhlI	GDGCHC	3 cut(s)	214, 450, 670
MlsI	TGGCCA	3 cut(s)	5, 1016, 1244
MluCI	AATT	6 cut(s)	329, 352, 430, 805, 939, 1257
MluNI	TGGCCA	3 cut(s)	5, 1016, 1244
MlyI	GAGTC	3 cut(s)	126, 177, 749
Mox20I	TGGCCA	3 cut(s)	5, 1016, 1244
Mph1103I	ATGCAT	1 cut(s)	1393
MscI	TGGCCA	3 cut(s)	5, 1016, 1244
MseI	TTAA	3 cut(s)	420, 1275, 1302
MslI	CAYNNNNRTG	2 cut(s)	692, 993
Msp20I	TGGCCA	3 cut(s)	5, 1016, 1244
MspR9I	CCNGG	1 cut(s)	324
MvaI	CCWGG	1 cut(s)	324
NcoI	CCATGG	1 cut(s)	1252
NdeII	GATC	2 cut(s)	361, 1291
NlaIV	GGNNCC	3 cut(s)	316, 630, 1006
NmuCI	GTSAC	5 cut(s)	124, 142, 503, 1147, 1281
NsiI	ATGCAT	1 cut(s)	1393
NspI	RCATGY	5 cut(s)	73, 908, 958, 1028, 1082
PaeI	GCATGC	1 cut(s)	908
PceI	AGGCCT	1 cut(s)	1044
PfeI	GAWTC	4 cut(s)	248, 697, 710, 913
PkrI	GCNGC	8 cut(s)	158, 203, 298, 406, 520, 643, 1210, 1354
PleI	GAGTC	3 cut(s)	125, 177, 748
PpsI	GAGTC	3 cut(s)	125, 177, 748
PshAI	GACNNNNGTC	1 cut(s)	843
Psp6I	CCWGG	1 cut(s)	322
PspGI	CCWGG	1 cut(s)	322
PspN4I	GGNNCC	3 cut(s)	316, 630, 1006
PspPI	GGNCC	2 cut(s)	629, 786
PstI	CTGCAG	1 cut(s)	646
PsuI	RGATCY	1 cut(s)	1291
RsaI	GTAC	2 cut(s)	266, 306
RsaNI	GTAC	2 cut(s)	265, 305
RseI	CAYNNNNRTG	2 cut(s)	692, 993
SalI	GTCGAC	1 cut(s)	1087
SaqAI	TTAA	3 cut(s)	420, 1275, 1302
SatI	GCNGC	8 cut(s)	157, 202, 297, 405, 519, 642, 1209, 1353
Sau3AI	GATC	2 cut(s)	361, 1291
Sau96I	GGNCC	2 cut(s)	629, 786
SchI	GAGTC	3 cut(s)	126, 177, 749
ScrFI	CCNGG	1 cut(s)	324
SduI	GDGCHC	3 cut(s)	214, 450, 670
SexAI	ACCWGGT	1 cut(s)	322
SfcI	CTRYAG	1 cut(s)	642
SinI	GGWCC	1 cut(s)	629
SmiMI	CAYNNNNRTG	2 cut(s)	692, 993
SmlI	CTYRAG	1 cut(s)	899
SmoI	CTYRAG	1 cut(s)	899
SphI	GCATGC	1 cut(s)	908
Sse9I	AATT	6 cut(s)	329, 352, 430, 805, 939, 1257
SseBI	AGGCCT	1 cut(s)	1044
SsiI	CCGC	3 cut(s)	159, 201, 1208
SspI	AATATT	1 cut(s)	1230
SspMI	CTAG	1 cut(s)	744
StuI	AGGCCT	1 cut(s)	1044
StyD4I	CCNGG	1 cut(s)	322
StyI	CCWWGG	5 cut(s)	44, 357, 1179, 1201, 1252
TaaI	ACNGT	3 cut(s)	345, 842, 1038
TaiI	ACGT	3 cut(s)	176, 553, 1088
TaqI	TCGA	5 cut(s)	87, 273, 547, 916, 1088
TasI	AATT	6 cut(s)	329, 352, 430, 805, 939, 1257
TauI	GCSGC	2 cut(s)	204, 1211
TfiI	GAWTC	4 cut(s)	248, 697, 710, 913
Tru1I	TTAA	3 cut(s)	420, 1275, 1302
Tru9I	TTAA	3 cut(s)	420, 1275, 1302
TscAI	CASTG	3 cut(s)	133, 219, 508
TseFI	GTSAC	5 cut(s)	124, 142, 503, 1147, 1281
TseI	GCWGC	6 cut(s)	156, 296, 404, 518, 641, 1352
Tsp45I	GTSAC	5 cut(s)	124, 142, 503, 1147, 1281
TspDTI	ATGAA	5 cut(s)	251, 556, 626, 1037, 1303
TspRI	CASTG	3 cut(s)	133, 219, 508
VpaK11BI	GGWCC	1 cut(s)	629
XapI	RAATTY	2 cut(s)	329, 939
XceI	RCATGY	5 cut(s)	73, 908, 958, 1028, 1082
XmiI	GTMKAC	1 cut(s)	1088
XspI	CTAG	1 cut(s)	744
ZraI	GACGTC	1 cut(s)	551
Zsp2I	ATGCAT	1 cut(s)	1393

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.