Rh2CG511000

Belongs to the beta-ketoacyl-ACP synthases family

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2C
Physical Location & Seq
Reverse (-)
68460028 .. 68464356
4329 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2CG511000.1

Sequence Viewer

Length: 1401 bp
ATGGCTGCTTCTGGTTGGCGTAAGCTCTTCACTCGTCGCATTTCATCATCATCTTCTTCTTCTTCTTTCGAGCCCCCTCCACTTGTTCACTCTCGCAGAGTCGTCGTCACTGGTTTGGGCCTGGTGACTCCATTGGGGTGTGGGGTGGAGACTACATGGAAGACACTCATAGACGGCGGTTGTGGCGTTAGGGGATTGACCCTTGAGGATCTCAAGATGAATGGGTTTGATTCAGAGACCCAATCTCACTCTTTTGACCAGCTCACTTCCAAAGTCGCCGCTGTTGTGCCCACCGGAACCAATTCAGGTGAATTCAACCAAGACTTGTGGCTCAATTCTAAGGAGCATCGTTCGATTGCGAGGTTTATAGGGTATGCATTGTGTGCTGCTGATGAGGCACTTAGAGATGCTAATTGGATGCCTACTGAGCCTGAGCACAAAGAAAGAACGGGTGTCTCAGTTGGTGGGGGAACTGGAAGCATCAGTGACATATTGGATGCTGCACGGTTGATTTGTCAGAAGCGTCTTCGTCGGCTTAGTCCCTTTTTCATCCCACGGATATTGATTAACATGGCAGCTGGTCATATCAGCATGAAATATGGATTCCAGGGACCAAACCATGCTGCAGTAACAGCGTGTGCCACTGGTGCACATTCTCTGGGTGATGCCACGAGGATGATTCAGTTTGGAGATTCAGATGTAATGGTGGCTGGAGGCACAGAGTCTAGTATTGATGCTTTATCAATTGCAGGATTCTGCAGGTCAAGGGCGTTGTCTACAAAGTACAATTCCTCCCCACAAGAAGCATCACGACCTTTTGACTGTGGTCGGGATGGGTTTGTGATAGGTGAAGGTTCTGGCATCTTGGTGTTGGAGGAGCTTGAGCATGCAAAGAATCGAGGTGCAAAAATTTATGCAGAAGTTCGTGGTTATGGGATGTCAGGTGATGCATATCACATTACTCAACCACATACTGATGGAAGAGGTGCCATTCTAGCCATGACTAGTGCATTGAGACAGTCAGGGATTCATCCTCACCAAGTGGATTATGTAAACGCCCACGCTACCTCAACACCTTTGGGTGATTCAATAGAAGCCAATGCTATCAGAAACGTTTTCACTGAACATGCAACATCAGGTTCTCTAGCGCTGTCCTCCACAAAGGGAGCTGTTGGTCATCTCCTTGGTGCAGCTGGGGCTGTTGAAGCAATATTTTCTATTTTGGCCATACACCATGGAGTTGCACCACTAACACTTAATCTTTCAAAACCAGACCCACTATTTAAGGATGCTTTCATGCCGTTGACAGCTTCAAAGCAAATGAATATAAGAGCAGCTTTGTCGAACTCTTTTGGCTTTGGAGGAACAAATGCATCTCTGCTGTTTACATCTCCTCCCTGA

Protein Analysis

466

Amino Acids

49.31

Weight (kDa)

7.29

Isoelectric Point (pI)

44.09

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ketoacyl-synt PF00109 32 - 297 2.3e-51 Beta-ketoacyl synthase, N-terminal domain
Ketoacyl-synt_C PF02801 305 - 421 6.9e-39 Beta-ketoacyl synthase, C-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0015277)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G04540
fragaria_vesca FvH4_6g41780
malus_domestica MD09G1117200.v1.1
prunus_persica Prupe.3G206600_v2.0.a1 Prupe.3G206600_v2.0.a1
pyrus_communis pycom09g04220
rosa_chinensis RchiOBHm_Chr2g0157571
rosa_laevigata RLG00000020999
rosa_multiflora Rmu_sc0000195.1_g000042
rosa_roxburghii Rroxscaffold_2G00092110
rosa_rugosa Rorug02G0462200
rosa_samantha Rh2AG526300 Rh2BG541000 Rh2CG511000 Rh2DG549500
rosa_wichuraiana Rw2G043590

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 750
AccB1I GGYRCC 1 cut(s) 986
AccI GTMKAC 1 cut(s) 776
AciI CCGC 2 cut(s) 177, 279
AclI AACGTT 1 cut(s) 1113
AclWI GGATC 1 cut(s) 216
AcoI YGGCCR 1 cut(s) 1224
AcsI RAATTY 2 cut(s) 311, 909
AdeI CACNNNGTG 1 cut(s) 1042
AfaI GTAC 1 cut(s) 785
AfeI AGCGCT 1 cut(s) 1149
AgsI TTSAA 5 cut(s) 316, 1089, 1205, 1266, 1314
AhlI ACTAGT 1 cut(s) 1004
AjnI CCWGG 2 cut(s) 120, 606
AluBI AGCT 8 cut(s) 25, 262, 578, 880, 1169, 1193, 1310, 1337
AluI AGCT 8 cut(s) 25, 262, 578, 880, 1169, 1193, 1310, 1337
Alw21I GWGCWC 2 cut(s) 438, 652
Alw26I GTCTC 4 cut(s) 143, 230, 460, 1009
Alw44I GTGCAC 1 cut(s) 648
AlwI GGATC 1 cut(s) 216
Aor51HI AGCGCT 1 cut(s) 1149
AoxI GGCC 2 cut(s) 118, 1224
ApaLI GTGCAC 1 cut(s) 648
ApeKI GCWGC 7 cut(s) 5, 386, 500, 575, 623, 1190, 1334
ApoI RAATTY 2 cut(s) 311, 909
Asp700I GAANNNNTTC 1 cut(s) 301
AspLEI GCGC 1 cut(s) 1150
AspS9I GGNCC 2 cut(s) 118, 611
AsuHPI GGTGA 7 cut(s) 136, 320, 674, 860, 956, 1028, 1094
AvaII GGWCC 1 cut(s) 611
BaeGI GKGCMC 2 cut(s) 291, 652
BalI TGGCCA 1 cut(s) 1226
BanI GGYRCC 1 cut(s) 986
BanII GRGCYC 1 cut(s) 75
BauI CACGAG 1 cut(s) 670
BbsI GAAGAC 2 cut(s) 167, 518
Bbv12I GWGCWC 2 cut(s) 438, 652
BbvI GCAGC 6 cut(s) 373, 487, 587, 610, 1202, 1346
BccI CCATC 2 cut(s) 827, 971
BceAI ACGGC 2 cut(s) 190, 1285
BcgI CGANNNNNNTGC 4 cut(s) 85, 119, 1323, 1357
BciT130I CCWGG 2 cut(s) 122, 608
BcoDI GTCTC 4 cut(s) 143, 230, 460, 1009
BcuI ACTAGT 1 cut(s) 1004
BfaI CTAG 4 cut(s) 726, 995, 1005, 1145
BfmI CTRYAG 2 cut(s) 624, 757
BfoI RGCGCY 1 cut(s) 1151
BfuAI ACCTGC 1 cut(s) 750
BisI GCNGC 8 cut(s) 6, 279, 387, 501, 576, 624, 1191, 1335
BlsI GCNGC 8 cut(s) 7, 280, 388, 502, 577, 625, 1192, 1336
Bme1390I CCNGG 2 cut(s) 122, 608
Bme18I GGWCC 1 cut(s) 611
BmgT120I GGNCC 2 cut(s) 118, 611
BmiI GGNNCC 3 cut(s) 298, 612, 988
BmrFI CCNGG 2 cut(s) 122, 608
BoxI GACNNNNGTC 1 cut(s) 825
BpiI GAAGAC 2 cut(s) 167, 518
BpmI CTGGAG 1 cut(s) 732
Bpu10I CCTNAGC 1 cut(s) 432
BpuEI CTTGAG 3 cut(s) 197, 224, 902
BsaBI GATNNNNATC 1 cut(s) 951
BsaI GGTCTC 1 cut(s) 230
BsaJI CCNNGG 4 cut(s) 554, 607, 1183, 1234
BsaWI WCCGGW 1 cut(s) 293
BsaXI ACNNNNNCTCC 3 cut(s) 776, 806, 1378
Bse1I ACTGG 3 cut(s) 115, 478, 649
Bse8I GATNNNNATC 1 cut(s) 951
BseBI CCWGG 2 cut(s) 122, 608
BseDI CCNNGG 4 cut(s) 554, 607, 1183, 1234
BseGI GGATG 8 cut(s) 423, 502, 549, 681, 838, 942, 1030, 1294
BseJI GATNNNNATC 1 cut(s) 951
BseMII CTCAG 3 cut(s) 417, 423, 471
BseNI ACTGG 3 cut(s) 115, 478, 649
BseRI GAGGAG 2 cut(s) 890, 1383
BseSI GKGCMC 2 cut(s) 291, 652
BseXI GCAGC 6 cut(s) 373, 487, 587, 610, 1202, 1346
BseYI CCCAGC 1 cut(s) 1193
BsgI GTGCAG 2 cut(s) 486, 1209
BshFI GGCC 2 cut(s) 120, 1226
BshNI GGYRCC 1 cut(s) 986
BsiHKAI GWGCWC 2 cut(s) 438, 652
BsiSI CCGG 1 cut(s) 294
BslFI GGGAC 2 cut(s) 525, 624
BsmAI GTCTC 4 cut(s) 143, 230, 460, 1009
BsmFI GGGAC 2 cut(s) 525, 624
BsnI GGCC 2 cut(s) 120, 1226
Bso31I GGTCTC 1 cut(s) 230
Bsp1286I GDGCHC 4 cut(s) 75, 291, 438, 652
Bsp143I GATC 1 cut(s) 208
Bsp19I CCATGG 1 cut(s) 1234
BspACI CCGC 2 cut(s) 177, 279
BspANI GGCC 2 cut(s) 120, 1226
BspCNI CTCAG 3 cut(s) 418, 424, 470
BspLI GGNNCC 3 cut(s) 298, 612, 988
BspMAI CTGCAG 2 cut(s) 628, 761
BspMI ACCTGC 1 cut(s) 750
BspPI GGATC 1 cut(s) 216
BspQI GCTCTTC 1 cut(s) 32
BspT107I GGYRCC 1 cut(s) 986
BspTNI GGTCTC 1 cut(s) 230
BsrI ACTGG 3 cut(s) 115, 478, 649
BssECI CCNNGG 4 cut(s) 554, 607, 1183, 1234
BssMI GATC 1 cut(s) 208
BssSI CACGAG 1 cut(s) 670
BssT1I CCWWGG 2 cut(s) 1183, 1234
Bst2BI CACGAG 1 cut(s) 670
Bst2UI CCWGG 2 cut(s) 122, 608
Bst4CI ACNGT 3 cut(s) 507, 824, 1020
Bst6I CTCTTC 2 cut(s) 32, 976
BstAPI GCANNNNNTGC 1 cut(s) 383
BstC8I GCNNGC 1 cut(s) 888
BstDEI CTNAG 6 cut(s) 339, 401, 426, 432, 457, 536
BstDSI CCRYGG 2 cut(s) 554, 1234
BstF5I GGATG 8 cut(s) 423, 502, 549, 681, 838, 942, 1030, 1294
BstH2I RGCGCY 1 cut(s) 1151
BstHHI GCGC 1 cut(s) 1150
BstKTI GATC 1 cut(s) 211
BstMAI GTCTC 4 cut(s) 143, 230, 460, 1009
BstMBI GATC 1 cut(s) 208
BstMWI GCNNNNNNNGC 9 cut(s) 183, 383, 395, 427, 632, 647, 995, 1196, 1205
BstNI CCWGG 2 cut(s) 122, 608
BstNSI RCATGY 2 cut(s) 890, 1130
BstPAI GACNNNNGTC 1 cut(s) 825
BstSCI CCNGG 2 cut(s) 120, 606
BstSFI CTRYAG 2 cut(s) 624, 757
BstSLI GKGCMC 2 cut(s) 291, 652
BstV1I GCAGC 6 cut(s) 373, 487, 587, 610, 1202, 1346
BstV2I GAAGAC 2 cut(s) 167, 518
BstX2I RGATCY 1 cut(s) 208
BstYI RGATCY 1 cut(s) 208
BsuRI GGCC 2 cut(s) 120, 1226
BtgI CCRYGG 2 cut(s) 554, 1234
BtsCI GGATG 8 cut(s) 423, 502, 549, 681, 838, 942, 1030, 1294
BtsIMutI CAGTG 4 cut(s) 108, 490, 642, 1119
BveI ACCTGC 1 cut(s) 750
Cac8I GCNNGC 1 cut(s) 888
CfoI GCGC 1 cut(s) 1150
Cfr13I GGNCC 2 cut(s) 118, 611
CseI GACGC 1 cut(s) 512
Csp6I GTAC 1 cut(s) 784
CspCI CAANNNNNGTGG 4 cut(s) 308, 343, 543, 578
CviAII CATG 9 cut(s) 156, 571, 592, 620, 887, 1000, 1127, 1235, 1297
CviQI GTAC 1 cut(s) 784
DdeI CTNAG 6 cut(s) 339, 401, 426, 432, 457, 536
DpnI GATC 1 cut(s) 210
DpnII GATC 1 cut(s) 208
DraIII CACNNNGTG 1 cut(s) 1042
EaeI YGGCCR 1 cut(s) 1224
Eam1104I CTCTTC 2 cut(s) 32, 976
EarI CTCTTC 2 cut(s) 32, 976
Eco130I CCWWGG 2 cut(s) 1183, 1234
Eco24I GRGCYC 1 cut(s) 75
Eco31I GGTCTC 1 cut(s) 230
Eco47I GGWCC 1 cut(s) 611
Eco47III AGCGCT 1 cut(s) 1149
EcoRI GAATTC 1 cut(s) 311
EcoRII CCWGG 2 cut(s) 120, 606
EcoT14I CCWWGG 2 cut(s) 1183, 1234
EcoT22I ATGCAT 3 cut(s) 379, 952, 1375
EcoT38I GRGCYC 1 cut(s) 75
ErhI CCWWGG 2 cut(s) 1183, 1234
FaeI CATG 9 cut(s) 159, 574, 595, 623, 890, 1003, 1130, 1238, 1300
FalI AAGNNNNNCTT 2 cut(s) 1321, 1353
FaqI GGGAC 2 cut(s) 525, 624
FatI CATG 9 cut(s) 155, 570, 591, 619, 886, 999, 1126, 1234, 1296
FblI GTMKAC 1 cut(s) 776
Fnu4HI GCNGC 8 cut(s) 6, 279, 387, 501, 576, 624, 1191, 1335
FokI GGATG 8 cut(s) 430, 509, 536, 688, 845, 949, 1017, 1301
FriOI GRGCYC 1 cut(s) 75
Fsp4HI GCNGC 8 cut(s) 6, 279, 387, 501, 576, 624, 1191, 1335
FspBI CTAG 4 cut(s) 726, 995, 1005, 1145
GlaI GCGC 1 cut(s) 1149
GluI GCNGC 8 cut(s) 6, 279, 387, 501, 576, 624, 1191, 1335
GsaI CCCAGC 1 cut(s) 1197
GsuI CTGGAG 1 cut(s) 732
HaeII RGCGCY 1 cut(s) 1151
HaeIII GGCC 2 cut(s) 120, 1226
HapII CCGG 1 cut(s) 294
HgaI GACGC 1 cut(s) 512
HhaI GCGC 1 cut(s) 1150
Hin1II CATG 9 cut(s) 159, 574, 595, 623, 890, 1003, 1130, 1238, 1300
Hin6I GCGC 1 cut(s) 1148
HinP1I GCGC 1 cut(s) 1148
HincII GTYRAC 1 cut(s) 1305
HindII GTYRAC 1 cut(s) 1305
HpaII CCGG 1 cut(s) 294
HphI GGTGA 7 cut(s) 136, 320, 674, 860, 956, 1028, 1094
Hpy166II GTNNAC 6 cut(s) 88, 650, 777, 1054, 1305, 1386
Hpy188I TCNGA 4 cut(s) 235, 519, 697, 1109
Hpy188III TCNNGA 3 cut(s) 214, 810, 830
Hpy8I GTNNAC 6 cut(s) 88, 650, 777, 1054, 1305, 1386
Hpy99I CGWCG 3 cut(s) 39, 107, 534
HpyAV CCTTC 1 cut(s) 845
HpyCH4III ACNGT 3 cut(s) 507, 824, 1020
HpyCH4IV ACGT 1 cut(s) 1113
HpyF10VI GCNNNNNNNGC 9 cut(s) 183, 383, 395, 427, 632, 647, 995, 1196, 1205
HpyF3I CTNAG 6 cut(s) 339, 401, 426, 432, 457, 536
HpySE526I ACGT 1 cut(s) 1113
Hsp92II CATG 9 cut(s) 159, 574, 595, 623, 890, 1003, 1130, 1238, 1300
HspAI GCGC 1 cut(s) 1148
Kzo9I GATC 1 cut(s) 208
LguI GCTCTTC 1 cut(s) 32
LmnI GCTCC 3 cut(s) 343, 877, 1166
Lsp1109I GCAGC 6 cut(s) 373, 487, 587, 610, 1202, 1346
MaeI CTAG 4 cut(s) 726, 995, 1005, 1145
MaeII ACGT 1 cut(s) 1113
MaeIII GTNAC 4 cut(s) 106, 124, 485, 628
MalI GATC 1 cut(s) 210
MboI GATC 1 cut(s) 208
MboII GAAGA 8 cut(s) 19, 45, 48, 51, 54, 172, 518, 993
MfeI CAATTG 1 cut(s) 744
MflI RGATCY 1 cut(s) 208
MhlI GDGCHC 4 cut(s) 75, 291, 438, 652
MlsI TGGCCA 1 cut(s) 1226
MluCI AATT 7 cut(s) 301, 311, 334, 412, 744, 787, 909
MluNI TGGCCA 1 cut(s) 1226
MlyI GAGTC 3 cut(s) 108, 121, 731
MmeI TCCRAC 1 cut(s) 852
Mox20I TGGCCA 1 cut(s) 1226
Mph1103I ATGCAT 3 cut(s) 379, 952, 1375
MroXI GAANNNNTTC 1 cut(s) 301
MscI TGGCCA 1 cut(s) 1226
MseI TTAA 3 cut(s) 567, 1257, 1284
MslI CAYNNNNRTG 4 cut(s) 136, 674, 866, 975
Msp20I TGGCCA 1 cut(s) 1226
MspA1I CMGCKG 3 cut(s) 281, 578, 1193
MspI CCGG 1 cut(s) 294
MspR9I CCNGG 2 cut(s) 122, 608
MunI CAATTG 1 cut(s) 744
MvaI CCWGG 2 cut(s) 122, 608
MwoI GCNNNNNNNGC 9 cut(s) 183, 383, 395, 427, 632, 647, 995, 1196, 1205
NcoI CCATGG 1 cut(s) 1234
NdeII GATC 1 cut(s) 208
NlaIII CATG 9 cut(s) 159, 574, 595, 623, 890, 1003, 1130, 1238, 1300
NlaIV GGNNCC 3 cut(s) 298, 612, 988
NmuCI GTSAC 3 cut(s) 106, 124, 485
NsiI ATGCAT 3 cut(s) 379, 952, 1375
NspI RCATGY 2 cut(s) 890, 1130
PaeI GCATGC 1 cut(s) 890
PciSI GCTCTTC 1 cut(s) 32
PdmI GAANNNNTTC 1 cut(s) 301
PfeI GAWTC 8 cut(s) 230, 603, 679, 692, 753, 895, 1027, 1085
PkrI GCNGC 8 cut(s) 7, 280, 388, 502, 577, 625, 1192, 1336
PleI GAGTC 3 cut(s) 107, 121, 730
PpsI GAGTC 3 cut(s) 107, 121, 730
PshAI GACNNNNGTC 1 cut(s) 825
Psp1406I AACGTT 1 cut(s) 1113
Psp6I CCWGG 2 cut(s) 120, 606
PspFI CCCAGC 1 cut(s) 1193
PspGI CCWGG 2 cut(s) 120, 606
PspN4I GGNNCC 3 cut(s) 298, 612, 988
PspPI GGNCC 2 cut(s) 118, 611
PstI CTGCAG 2 cut(s) 628, 761
PsuI RGATCY 1 cut(s) 208
PvuII CAGCTG 2 cut(s) 578, 1193
RsaI GTAC 1 cut(s) 785
RsaNI GTAC 1 cut(s) 784
RseI CAYNNNNRTG 4 cut(s) 136, 674, 866, 975
SapI GCTCTTC 1 cut(s) 32
SaqAI TTAA 3 cut(s) 567, 1257, 1284
SatI GCNGC 8 cut(s) 6, 279, 387, 501, 576, 624, 1191, 1335
Sau3AI GATC 1 cut(s) 208
Sau96I GGNCC 2 cut(s) 118, 611
SchI GAGTC 3 cut(s) 108, 121, 731
ScrFI CCNGG 2 cut(s) 122, 608
SduI GDGCHC 4 cut(s) 75, 291, 438, 652
SfcI CTRYAG 2 cut(s) 624, 757
SinI GGWCC 1 cut(s) 611
SmiMI CAYNNNNRTG 4 cut(s) 136, 674, 866, 975
SmlI CTYRAG 3 cut(s) 203, 212, 881
SmoI CTYRAG 3 cut(s) 203, 212, 881
SpeI ACTAGT 1 cut(s) 1004
SphI GCATGC 1 cut(s) 890
Sse9I AATT 7 cut(s) 301, 311, 334, 412, 744, 787, 909
SsiI CCGC 2 cut(s) 177, 279
SspI AATATT 1 cut(s) 1212
SspMI CTAG 4 cut(s) 726, 995, 1005, 1145
StyD4I CCNGG 2 cut(s) 120, 606
StyI CCWWGG 2 cut(s) 1183, 1234
TaaI ACNGT 3 cut(s) 507, 824, 1020
TaiI ACGT 1 cut(s) 1116
TaqI TCGA 4 cut(s) 69, 353, 898, 1343
TasI AATT 7 cut(s) 301, 311, 334, 412, 744, 787, 909
TatI WGTACW 1 cut(s) 783
TauI GCSGC 1 cut(s) 281
TfiI GAWTC 8 cut(s) 230, 603, 679, 692, 753, 895, 1027, 1085
Tru1I TTAA 3 cut(s) 567, 1257, 1284
Tru9I TTAA 3 cut(s) 567, 1257, 1284
TscAI CASTG 4 cut(s) 115, 490, 649, 1126
TseFI GTSAC 3 cut(s) 106, 124, 485
TseI GCWGC 7 cut(s) 5, 386, 500, 575, 623, 1190, 1334
Tsp45I GTSAC 3 cut(s) 106, 124, 485
TspDTI ATGAA 7 cut(s) 33, 233, 538, 608, 1019, 1285, 1337
TspGWI ACGGA 1 cut(s) 571
TspRI CASTG 4 cut(s) 115, 490, 649, 1126
VneI GTGCAC 1 cut(s) 648
VpaK11BI GGWCC 1 cut(s) 611
XapI RAATTY 2 cut(s) 311, 909
XceI RCATGY 2 cut(s) 890, 1130
XmiI GTMKAC 1 cut(s) 776
XmnI GAANNNNTTC 1 cut(s) 301
XspI CTAG 4 cut(s) 726, 995, 1005, 1145
Zsp2I ATGCAT 3 cut(s) 379, 952, 1375
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.