pycom09g04220

Belongs to the beta-ketoacyl-ACP synthases family

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr9
Physical Location & Seq
Forward (+)
3087535 .. 3091208
3674 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom09g04220.13

Sequence Viewer

Length: 1479 bp
ATGAGTGGCTCTCCTGAGTTAGGTGCAAGGCCCAAAATCAAGCGGCCCATTAAGATGTCTCAATCCATTGTTGGCGCTTCGAAGAAAACAATGGCGTCTCCCGCTTGGCGCAAACTCTTCAGTCGTCGCATGTCCTCGTCCTTCTTCACCCCCCCTCATCCTCTTCGTTCCCGCAGAGTCGTCGTCACTGGGTTGGGCATGGTGACGCCATTGGGCTGCGGAGTGGAGACGACGTGGAAGAGACTCATAGAAGGCGAGTGCGGCATAAGGGCACTGACCCATCAAGATATCAAGATGAACGGCTTTGATTCAGACACCCAATCGTACACCTTCGACCAGCTCACCTCCAAAGTTGCTGCAATCGTACCCTGTGGAACCAAACCAGGTGAATTCAACGAGGAACTGTGGCTCAATTCCAAGGATCATCGTTCGATGGCGAGATTTATTGGGTATGCTATGTGTGCTGCTGAAGAAGCACTTAAAGATGCTAATTGGATGCCTACTGAGCCGGAAGAGAGGGAAAGAACGGGTGTCTCAGTTGGTGGGGGAACTGGAAGTATCAGTGACATATTGGATGCTGCACAAATGATTTGTGAGAAGCGTATTCGGCGTCTTAGTCCTTTCTTCATTCCTCGGATACTAATCAACATGGCATCTGGTCATATCAGCATGAAATATGGATTTCAGGGACCAAATCATGCTGCAGTAACAGCTTGCGCTACTGGAGCACATTCTCTGGGTGATGCCACAAGGATGATTCAGTTTGGAGATTCAGATGTTATGGTGGCTGGAGGCACAGAGTCTAGCATTGATGCTTTATCAATAGCAGGATTTTGCAAGTCAAGGGCTTTGACCACGAAATACAATTCCTCCCCACAAGAAGCATCACGACCTTTTGACTGTGGTCGGGATGGGTTTGTAATCGGTGAAGGTTCTGGTGTTGTGGTTTTGGAGGAGCTTGATCATGCAAAGAATCGAGGAGCAAAAATATATGCAGAAATTCGTGGTTATGGCATGTCAGGTGATGCGTATCATATTACTCAACCACATACTGATGGAAGAGGTGCCATTCTGGCCATGACACATGCCATTAGACAGTCAGGCCTTCATCCTAAACAAGTGGATTATGTAAATGCGCATGCTACATCGACACCTTTGGGTGATGCAATAGAAGCCAATGCTATCAAAACCATTTTCTCTGACCATGTGACATCTGGTGCTTTAGCATTGTCCTCCACCAAGGGAGCTGTTGGTCATCTCCTTGGTGCGGCTGGAGCTGTTGAAGCAATATTTTCTATTTTGGCCATACACCATGGAATTGCACCACCAACGCTTAATCTGTCACAACCAGATCCAGTATTTAAGGATGCTTTCATGCCTCTGACAACTTCAAAGACCATGCCAATAAGAGCAGCTTTGTCGAACTCTTTTGGCTTCGGAGGAACAAATGCATCCCTGCTGTTTACATCTGCTCCTTGA

Protein Analysis

493

Amino Acids

52.47

Weight (kDa)

8.81

Isoelectric Point (pI)

49.15

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0015277)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G04540
fragaria_vesca FvH4_6g41780
malus_domestica MD09G1117200.v1.1
prunus_persica Prupe.3G206600_v2.0.a1 Prupe.3G206600_v2.0.a1
pyrus_communis pycom09g04220
rosa_chinensis RchiOBHm_Chr2g0157571
rosa_laevigata RLG00000020999
rosa_multiflora Rmu_sc0000195.1_g000042
rosa_roxburghii Rroxscaffold_2G00092110
rosa_rugosa Rorug02G0462200
rosa_samantha Rh2AG526300 Rh2BG541000 Rh2CG511000 Rh2DG549500
rosa_wichuraiana Rw2G043590

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 1137
AccB1I GGYRCC 1 cut(s) 1064
AciI CCGC 6 cut(s) 43, 102, 172, 219, 261, 1268
AclWI GGATC 2 cut(s) 429, 1346
AcoI YGGCCR 2 cut(s) 1074, 1302
AcsI RAATTY 2 cut(s) 389, 999
AcuI CTGAAG 2 cut(s) 103, 489
AcyI GRCGYC 3 cut(s) 95, 206, 610
AfaI GTAC 2 cut(s) 326, 366
AfiI CCNNNNNNNGG 2 cut(s) 20, 1267
AgsI TTSAA 3 cut(s) 394, 1283, 1392
AjiI CACGTC 1 cut(s) 234
AjnI CCWGG 1 cut(s) 382
AluBI AGCT 6 cut(s) 340, 713, 958, 1247, 1277, 1415
AluI AGCT 6 cut(s) 340, 713, 958, 1247, 1277, 1415
Alw21I GWGCWC 1 cut(s) 730
Alw26I GTCTC 5 cut(s) 63, 102, 221, 235, 538
AlwI GGATC 2 cut(s) 429, 1346
AoxI GGCC 5 cut(s) 29, 44, 1074, 1102, 1302
ApeKI GCWGC 6 cut(s) 216, 356, 464, 578, 701, 1412
ApoI RAATTY 2 cut(s) 389, 999
AspLEI GCGC 4 cut(s) 77, 111, 719, 1138
AspS9I GGNCC 3 cut(s) 30, 45, 689
AsuHPI GGTGA 8 cut(s) 139, 214, 334, 398, 752, 938, 1034, 1172
AsuII TTCGAA 1 cut(s) 80
AvaII GGWCC 1 cut(s) 689
BaeGI GKGCMC 1 cut(s) 274
BalI TGGCCA 2 cut(s) 1076, 1304
BanI GGYRCC 1 cut(s) 1064
Bbv12I GWGCWC 1 cut(s) 730
BbvI GCAGC 6 cut(s) 203, 343, 451, 565, 688, 1424
BccI CCATC 4 cut(s) 288, 427, 905, 1049
BceAI ACGGC 1 cut(s) 316
BcgI CGANNNNNNTGC 4 cut(s) 163, 197, 1401, 1435
BciT130I CCWGG 1 cut(s) 384
BciVI GTATCC 1 cut(s) 630
BclI TGATCA 1 cut(s) 961
BcoDI GTCTC 5 cut(s) 63, 102, 221, 235, 538
BfaI CTAG 1 cut(s) 804
BfmI CTRYAG 1 cut(s) 702
BfoI RGCGCY 1 cut(s) 78
BfuI GTATCC 1 cut(s) 630
BglI GCCNNNNNGGC 1 cut(s) 1073
BisI GCNGC 9 cut(s) 44, 217, 262, 357, 465, 579, 702, 1269, 1413
BlsI GCNGC 9 cut(s) 45, 218, 263, 358, 466, 580, 703, 1270, 1414
Bme1390I CCNGG 1 cut(s) 384
Bme18I GGWCC 1 cut(s) 689
BmgBI CACGTC 1 cut(s) 234
BmgT120I GGNCC 3 cut(s) 30, 45, 689
BmiI GGNNCC 3 cut(s) 376, 690, 1066
BmrFI CCNGG 1 cut(s) 384
BmrI ACTGGG 1 cut(s) 198
BmuI ACTGGG 1 cut(s) 198
BoxI GACNNNNGTC 1 cut(s) 903
BplI GAGNNNNNCTC 1 cut(s) 27
BpmI CTGGAG 3 cut(s) 744, 810, 1293
Bpu14I TTCGAA 1 cut(s) 80
BsaBI GATNNNNATC 2 cut(s) 641, 1029
BsaHI GRCGYC 3 cut(s) 95, 206, 610
BsaJI CCNNGG 5 cut(s) 417, 632, 1239, 1261, 1312
BsaXI ACNNNNNCTCC 5 cut(s) 218, 248, 854, 884, 1456
Bsc4I CCNNNNNNNGG 2 cut(s) 20, 1267
Bse1I ACTGG 4 cut(s) 193, 556, 727, 1355
Bse8I GATNNNNATC 2 cut(s) 641, 1029
BseBI CCWGG 1 cut(s) 384
BseDI CCNNGG 5 cut(s) 417, 632, 1239, 1261, 1312
BseGI GGATG 8 cut(s) 157, 501, 580, 759, 916, 1108, 1372, 1451
BseJI GATNNNNATC 2 cut(s) 641, 1029
BseLI CCNNNNNNNGG 2 cut(s) 20, 1267
BseMII CTCAG 3 cut(s) 6, 495, 549
BseNI ACTGG 4 cut(s) 193, 556, 727, 1355
BseRI GAGGAG 2 cut(s) 968, 993
BseSI GKGCMC 1 cut(s) 274
BseXI GCAGC 6 cut(s) 203, 343, 451, 565, 688, 1424
BsgI GTGCAG 1 cut(s) 564
BshFI GGCC 5 cut(s) 31, 46, 1076, 1104, 1304
BshNI GGYRCC 1 cut(s) 1064
BsiHKAI GWGCWC 1 cut(s) 730
BsiSI CCGG 1 cut(s) 509
BslFI GGGAC 1 cut(s) 702
BslI CCNNNNNNNGG 2 cut(s) 20, 1267
BsmAI GTCTC 5 cut(s) 63, 102, 221, 235, 538
BsmBI CGTCTC 2 cut(s) 102, 221
BsmFI GGGAC 1 cut(s) 702
BsnI GGCC 5 cut(s) 31, 46, 1076, 1104, 1304
Bsp119I TTCGAA 1 cut(s) 80
Bsp1286I GDGCHC 2 cut(s) 274, 730
Bsp143I GATC 3 cut(s) 421, 961, 1351
Bsp19I CCATGG 1 cut(s) 1312
BspACI CCGC 6 cut(s) 43, 102, 172, 219, 261, 1268
BspANI GGCC 5 cut(s) 31, 46, 1076, 1104, 1304
BspCNI CTCAG 3 cut(s) 7, 496, 548
BspLI GGNNCC 3 cut(s) 376, 690, 1066
BspMAI CTGCAG 1 cut(s) 706
BspPI GGATC 2 cut(s) 429, 1346
BspT104I TTCGAA 1 cut(s) 80
BspT107I GGYRCC 1 cut(s) 1064
BsrI ACTGG 4 cut(s) 193, 556, 727, 1355
BssECI CCNNGG 5 cut(s) 417, 632, 1239, 1261, 1312
BssMI GATC 3 cut(s) 421, 961, 1351
BssNI GRCGYC 3 cut(s) 95, 206, 610
BssT1I CCWWGG 4 cut(s) 417, 1239, 1261, 1312
Bst2UI CCWGG 1 cut(s) 384
Bst4CI ACNGT 3 cut(s) 405, 902, 1098
Bst6I CTCTTC 5 cut(s) 122, 168, 233, 507, 1054
BstACI GRCGYC 3 cut(s) 95, 206, 610
BstBI TTCGAA 1 cut(s) 80
BstC8I GCNNGC 2 cut(s) 715, 1140
BstDEI CTNAG 4 cut(s) 15, 504, 535, 614
BstDSI CCRYGG 1 cut(s) 1312
BstENI CCTNNNNNAGG 1 cut(s) 18
BstF5I GGATG 8 cut(s) 157, 501, 580, 759, 916, 1108, 1372, 1451
BstH2I RGCGCY 1 cut(s) 78
BstHHI GCGC 4 cut(s) 77, 111, 719, 1138
BstKTI GATC 3 cut(s) 424, 964, 1354
BstMAI GTCTC 5 cut(s) 63, 102, 221, 235, 538
BstMBI GATC 3 cut(s) 421, 961, 1351
BstNI CCWGG 1 cut(s) 384
BstNSI RCATGY 4 cut(s) 133, 1018, 1088, 1142
BstPAI GACNNNNGTC 1 cut(s) 903
BstSCI CCNGG 1 cut(s) 382
BstSFI CTRYAG 1 cut(s) 702
BstSLI GKGCMC 1 cut(s) 274
BstV1I GCAGC 6 cut(s) 203, 343, 451, 565, 688, 1424
BstX2I RGATCY 1 cut(s) 1351
BstYI RGATCY 1 cut(s) 1351
BsuI GTATCC 1 cut(s) 630
BsuRI GGCC 5 cut(s) 31, 46, 1076, 1104, 1304
BtgI CCRYGG 1 cut(s) 1312
BtrI CACGTC 1 cut(s) 234
BtsCI GGATG 8 cut(s) 157, 501, 580, 759, 916, 1108, 1372, 1451
BtsIMutI CAGTG 3 cut(s) 186, 272, 568
Cac8I GCNNGC 2 cut(s) 715, 1140
CfoI GCGC 4 cut(s) 77, 111, 719, 1138
Cfr13I GGNCC 3 cut(s) 30, 45, 689
CseI GACGC 3 cut(s) 84, 214, 599
CsiI ACCWGGT 1 cut(s) 382
Csp6I GTAC 2 cut(s) 325, 365
CviQI GTAC 2 cut(s) 325, 365
DdeI CTNAG 4 cut(s) 15, 504, 535, 614
DpnI GATC 3 cut(s) 423, 963, 1353
DpnII GATC 3 cut(s) 421, 961, 1351
EaeI YGGCCR 2 cut(s) 1074, 1302
Eam1104I CTCTTC 5 cut(s) 122, 168, 233, 507, 1054
EarI CTCTTC 5 cut(s) 122, 168, 233, 507, 1054
Eco130I CCWWGG 4 cut(s) 417, 1239, 1261, 1312
Eco147I AGGCCT 1 cut(s) 1104
Eco32I GATATC 1 cut(s) 289
Eco47I GGWCC 1 cut(s) 689
Eco57I CTGAAG 2 cut(s) 103, 489
EcoNI CCTNNNNNAGG 1 cut(s) 18
EcoRI GAATTC 1 cut(s) 389
EcoRII CCWGG 1 cut(s) 382
EcoRV GATATC 1 cut(s) 289
EcoT14I CCWWGG 4 cut(s) 417, 1239, 1261, 1312
EcoT22I ATGCAT 1 cut(s) 1453
ErhI CCWWGG 4 cut(s) 417, 1239, 1261, 1312
Esp3I CGTCTC 2 cut(s) 102, 221
FalI AAGNNNNNCTT 4 cut(s) 462, 494, 1399, 1431
FaqI GGGAC 1 cut(s) 702
FauI CCCGC 2 cut(s) 109, 179
FbaI TGATCA 1 cut(s) 961
Fnu4HI GCNGC 9 cut(s) 44, 217, 262, 357, 465, 579, 702, 1269, 1413
FokI GGATG 8 cut(s) 144, 508, 587, 766, 923, 1095, 1379, 1438
Fsp4HI GCNGC 9 cut(s) 44, 217, 262, 357, 465, 579, 702, 1269, 1413
FspAI RTGCGCAY 1 cut(s) 1137
FspBI CTAG 1 cut(s) 804
FspI TGCGCA 1 cut(s) 1137
GlaI GCGC 4 cut(s) 76, 110, 718, 1137
GluI GCNGC 9 cut(s) 44, 217, 262, 357, 465, 579, 702, 1269, 1413
GsuI CTGGAG 3 cut(s) 744, 810, 1293
HaeII RGCGCY 1 cut(s) 78
HaeIII GGCC 5 cut(s) 31, 46, 1076, 1104, 1304
HapII CCGG 1 cut(s) 509
HgaI GACGC 3 cut(s) 84, 214, 599
HhaI GCGC 4 cut(s) 77, 111, 719, 1138
Hin1I GRCGYC 3 cut(s) 95, 206, 610
Hin6I GCGC 4 cut(s) 75, 109, 717, 1136
HinP1I GCGC 4 cut(s) 75, 109, 717, 1136
HinfI GANTC 7 cut(s) 177, 243, 308, 757, 770, 800, 973
HpaII CCGG 1 cut(s) 509
HphI GGTGA 8 cut(s) 139, 214, 334, 398, 752, 938, 1034, 1172
Hpy166II GTNNAC 2 cut(s) 327, 1464
Hpy188I TCNGA 6 cut(s) 313, 636, 775, 1201, 1383, 1439
Hpy188III TCNNGA 5 cut(s) 14, 284, 292, 888, 908
Hpy8I GTNNAC 2 cut(s) 327, 1464
Hpy99I CGWCG 3 cut(s) 129, 185, 235
HpyAV CCTTC 5 cut(s) 151, 245, 340, 923, 1115
HpyCH4III ACNGT 3 cut(s) 405, 902, 1098
HpyCH4IV ACGT 1 cut(s) 233
HpyF3I CTNAG 4 cut(s) 15, 504, 535, 614
HpySE526I ACGT 1 cut(s) 233
Hsp92I GRCGYC 3 cut(s) 95, 206, 610
HspAI GCGC 4 cut(s) 75, 109, 717, 1136
Ksp22I TGATCA 1 cut(s) 961
Kzo9I GATC 3 cut(s) 421, 961, 1351
LmnI GCTCC 6 cut(s) 725, 955, 980, 1244, 1274, 1477
Lsp1109I GCAGC 6 cut(s) 203, 343, 451, 565, 688, 1424
MabI ACCWGGT 1 cut(s) 382
MaeI CTAG 1 cut(s) 804
MaeII ACGT 1 cut(s) 233
MaeIII GTNAC 6 cut(s) 184, 202, 563, 706, 1207, 1341
MalI GATC 3 cut(s) 423, 963, 1353
MboI GATC 3 cut(s) 421, 961, 1351
MboII GAAGA 9 cut(s) 94, 109, 136, 155, 250, 482, 524, 616, 1071
MflI RGATCY 1 cut(s) 1351
MhlI GDGCHC 2 cut(s) 274, 730
MlsI TGGCCA 2 cut(s) 1076, 1304
MluCI AATT 6 cut(s) 389, 412, 490, 865, 999, 1317
MluNI TGGCCA 2 cut(s) 1076, 1304
MlyI GAGTC 3 cut(s) 186, 237, 809
Mox20I TGGCCA 2 cut(s) 1076, 1304
Mph1103I ATGCAT 1 cut(s) 1453
MscI TGGCCA 2 cut(s) 1076, 1304
MseI TTAA 4 cut(s) 51, 480, 1335, 1362
MslI CAYNNNNRTG 3 cut(s) 53, 752, 1053
Msp20I TGGCCA 2 cut(s) 1076, 1304
MspI CCGG 1 cut(s) 509
MspR9I CCNGG 1 cut(s) 384
MvaI CCWGG 1 cut(s) 384
NcoI CCATGG 1 cut(s) 1312
NdeII GATC 3 cut(s) 421, 961, 1351
NlaIV GGNNCC 3 cut(s) 376, 690, 1066
NmuCI GTSAC 5 cut(s) 184, 202, 563, 1207, 1341
NsbI TGCGCA 1 cut(s) 1137
NsiI ATGCAT 1 cut(s) 1453
NspI RCATGY 4 cut(s) 133, 1018, 1088, 1142
NspV TTCGAA 1 cut(s) 80
PaeI GCATGC 1 cut(s) 1142
PceI AGGCCT 1 cut(s) 1104
PfeI GAWTC 4 cut(s) 308, 757, 770, 973
PkrI GCNGC 9 cut(s) 45, 218, 263, 358, 466, 580, 703, 1270, 1414
PleI GAGTC 3 cut(s) 185, 237, 808
PpsI GAGTC 3 cut(s) 185, 237, 808
PshAI GACNNNNGTC 1 cut(s) 903
Psp6I CCWGG 1 cut(s) 382
PspGI CCWGG 1 cut(s) 382
PspN4I GGNNCC 3 cut(s) 376, 690, 1066
PspPI GGNCC 3 cut(s) 30, 45, 689
PstI CTGCAG 1 cut(s) 706
PsuI RGATCY 1 cut(s) 1351
RsaI GTAC 2 cut(s) 326, 366
RsaNI GTAC 2 cut(s) 325, 365
RseI CAYNNNNRTG 3 cut(s) 53, 752, 1053
SaqAI TTAA 4 cut(s) 51, 480, 1335, 1362
SatI GCNGC 9 cut(s) 44, 217, 262, 357, 465, 579, 702, 1269, 1413
Sau3AI GATC 3 cut(s) 421, 961, 1351
Sau96I GGNCC 3 cut(s) 30, 45, 689
SchI GAGTC 3 cut(s) 186, 237, 809
ScrFI CCNGG 1 cut(s) 384
SduI GDGCHC 2 cut(s) 274, 730
SexAI ACCWGGT 1 cut(s) 382
SfcI CTRYAG 1 cut(s) 702
SfuI TTCGAA 1 cut(s) 80
SinI GGWCC 1 cut(s) 689
SmiMI CAYNNNNRTG 3 cut(s) 53, 752, 1053
SphI GCATGC 1 cut(s) 1142
Sse9I AATT 6 cut(s) 389, 412, 490, 865, 999, 1317
SseBI AGGCCT 1 cut(s) 1104
SsiI CCGC 6 cut(s) 43, 102, 172, 219, 261, 1268
SspI AATATT 1 cut(s) 1290
SspMI CTAG 1 cut(s) 804
StuI AGGCCT 1 cut(s) 1104
StyD4I CCNGG 1 cut(s) 382
StyI CCWWGG 4 cut(s) 417, 1239, 1261, 1312
TaaI ACNGT 3 cut(s) 405, 902, 1098
TaiI ACGT 1 cut(s) 236
TaqI TCGA 6 cut(s) 80, 333, 431, 976, 1148, 1421
TasI AATT 6 cut(s) 389, 412, 490, 865, 999, 1317
TauI GCSGC 3 cut(s) 46, 264, 1271
TfiI GAWTC 4 cut(s) 308, 757, 770, 973
Tru1I TTAA 4 cut(s) 51, 480, 1335, 1362
Tru9I TTAA 4 cut(s) 51, 480, 1335, 1362
TscAI CASTG 3 cut(s) 193, 279, 568
TseFI GTSAC 5 cut(s) 184, 202, 563, 1207, 1341
TseI GCWGC 6 cut(s) 216, 356, 464, 578, 701, 1412
Tsp45I GTSAC 5 cut(s) 184, 202, 563, 1207, 1341
TspDTI ATGAA 5 cut(s) 311, 616, 686, 1097, 1363
TspRI CASTG 3 cut(s) 193, 279, 568
VpaK11BI GGWCC 1 cut(s) 689
XagI CCTNNNNNAGG 1 cut(s) 18
XapI RAATTY 2 cut(s) 389, 999
XceI RCATGY 4 cut(s) 133, 1018, 1088, 1142
XcmI CCANNNNNNNNNTGG 1 cut(s) 1211
XspI CTAG 1 cut(s) 804
Zsp2I ATGCAT 1 cut(s) 1453
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.