Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp03

Orthogroup ID

OG0015277

Physical Location & Seq

Genomic Coordinates Reverse (-)

21353314 .. 21357540

Gene Structure 4227 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.3G206600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1416 bp

ATGACCATTGTTGGCGCTTTGAAAGCTATGGCTGCTCCTGCTTGGCACAAACTCTTCCCTCGTCGCATGTCCTCTTCCTTTTTTGACCCCCCTCCACCTGTTCGTTCTCGCAGAGTCGTCGTCACTGGGTTGGGCATGGTAACTCCATTGGGGTGTGGAGTGGAGACTACGTGGAAGAGACTGATAGAGGGTGATTGTGGCATAAGGGCATTGACCCCTCAAGATCTCAAGATGAATGGCTTTGATACAGAGACCCAATCGTACACTTACGACCAGCTCACCTCCAAAGTCGCGGCGATTGTGCCCTGTGGAACCAACCCAGGTGAATTCAACGAGGACTTGTGGTTCAATTCTAAGGAGCATCGTTCAATGGCCAGGTTTATTGGGTATGCTCTATGTGCTGCTGAAGAAGCACTTAAAGATGCTAATTGGATGCCCACCGAGCCTGATCAAAAGGAAAGAACGGGTGTCTCAGTTGGTGGGGGAACTGGAAGCATCAGTGACATATTGGATGCTGCACAACTGATTTGTGAGAAGCGTCTTCGTCGGCTTAGTCCTTTTTTCATTCCCCGGATATTAATCAACATGGCATCTGGTCATATCAGCATGAAGTATGGATTCCAGGGACCAAACCATGCTGCAGTGACGGCTTGTGCTACTGGTGCACATTCTTTGGGTGATGCCACAAGGATGATTCAATTTGGAGATTCAGATGTTATGGTGGCTGGAGGCACAGAGTCTAGCATTGATGCTTTATCAATAGCAGGATTTTGCAGGTCAAGGGCTTTAACTACAAAATACAACTCTTCCCCTCAAGAATCATCACGACCTTTTGACTGTGGTCGAGATGGGTTTGTGATAGGTGAAGGTTCTGGCATCTTGGTCTTGGAGGAGCTTGAGCATGCAAAGAATAGAGGAGCAAAAATTTATGCAGAAATTCGTGGTTATGGAATGTCAGGAGATGCACATCACATTACTCAACCACATGCTGATGGAAGAGGTGCCATTCTGGCCATGACGAGTGCCTTTAAACAGTCAGGTATTCATCCAAAACAAGTGGATTATGTAAACGCCCATGCCACCTCAACACCTTTGGGTGATGCAATAGAAGCCAATGCTATCAAACATATTTTCTCTGACCATGCGACATCAGGTGCTTTAGCCTTGTCCTCCACCAAGGGAGCTATTGGTCATCTCCTTGGTGCAGCTGGAGCTGTTGAAGCAATATTTTCTGTTTTGGCCATACACCATGGAATTGCACCACTAACACTGAATCTCTCAAAACCAGATCCGGTGTTTAATGATGCTTTCATGCCTTTGACGGCTTCAAAGGAAATGCCAATAAGAGCAGCTTTGTCGAACTCTTTTGGCTTTGGAGGAACGAATGCATCCCTGCTGTTTGCATCTGCTCCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0006996 GO:0008150 GO:0009657 GO:0009668 GO:0009987 GO:0010027 GO:0016043 GO:0061024 GO:0071840

KEGG Pathways

Metabolic & Signaling

ko00061 ko00780 ko01100 ko01212 map00061 map00780 map01100 map01212

Pfam Domains

Protein Families

Ketoacyl-synt_C ketoacyl-synt

Protein Analysis

472

Amino Acids

50.02

Weight (kDa)

6.76

Isoelectric Point (pI)

45.03

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0015277)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G04540
fragaria_vesca	FvH4_6g41780
malus_domestica	MD09G1117200.v1.1
prunus_persica	Prupe.3G206600_v2.0.a1 Prupe.3G206600_v2.0.a1
pyrus_communis	pycom09g04220
rosa_chinensis	RchiOBHm_Chr2g0157571
rosa_laevigata	RLG00000020999
rosa_multiflora	Rmu_sc0000195.1_g000042
rosa_roxburghii	Rroxscaffold_2G00092110
rosa_rugosa	Rorug02G0462200
rosa_samantha	Rh2AG526300 Rh2BG541000 Rh2CG511000 Rh2DG549500
rosa_wichuraiana	Rw2G043590

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	765
AccB1I	GGYRCC	1 cut(s)	1001
AccII	CGCG	1 cut(s)	293
AciI	CCGC	1 cut(s)	293
AclWI	GGATC	1 cut(s)	1283
AcoI	YGGCCR	3 cut(s)	372, 1011, 1239
AcsI	RAATTY	3 cut(s)	326, 924, 936
AcuI	CTGAAG	1 cut(s)	426
AfaI	GTAC	1 cut(s)	263
AgsI	TTSAA	7 cut(s)	22, 331, 349, 369, 698, 1220, 1329
AjnI	CCWGG	3 cut(s)	319, 374, 621
AloI	GAACNNNNNNTCC	2 cut(s)	329, 361
AluBI	AGCT	7 cut(s)	26, 277, 895, 1184, 1208, 1214, 1352
AluI	AGCT	7 cut(s)	26, 277, 895, 1184, 1208, 1214, 1352
Alw21I	GWGCWC	1 cut(s)	667
Alw26I	GTCTC	4 cut(s)	158, 172, 245, 475
Alw44I	GTGCAC	1 cut(s)	663
AlwI	GGATC	1 cut(s)	1283
AoxI	GGCC	3 cut(s)	372, 1011, 1239
ApaLI	GTGCAC	1 cut(s)	663
ApeKI	GCWGC	6 cut(s)	32, 401, 515, 638, 1205, 1349
ApoI	RAATTY	3 cut(s)	326, 924, 936
AseI	ATTAAT	1 cut(s)	578
AspLEI	GCGC	1 cut(s)	17
AspS9I	GGNCC	1 cut(s)	626
AsuC2I	CCSGG	1 cut(s)	571
AsuHPI	GGTGA	6 cut(s)	203, 271, 335, 689, 875, 1109
AvaII	GGWCC	1 cut(s)	626
BaeGI	GKGCMC	2 cut(s)	306, 667
BalI	TGGCCA	3 cut(s)	374, 1013, 1241
BanI	GGYRCC	1 cut(s)	1001
BbsI	GAAGAC	1 cut(s)	533
Bbv12I	GWGCWC	1 cut(s)	667
BbvI	GCAGC	6 cut(s)	19, 388, 502, 625, 1217, 1361
BccI	CCATC	2 cut(s)	842, 986
BceAI	ACGGC	2 cut(s)	663, 1338
BcgI	CGANNNNNNTGC	4 cut(s)	100, 134, 1338, 1372
BciT130I	CCWGG	3 cut(s)	321, 376, 623
BclI	TGATCA	1 cut(s)	448
BcnI	CCSGG	1 cut(s)	571
BcoDI	GTCTC	4 cut(s)	158, 172, 245, 475
BfaI	CTAG	1 cut(s)	741
BfmI	CTRYAG	1 cut(s)	639
BfoI	RGCGCY	1 cut(s)	18
BfuAI	ACCTGC	1 cut(s)	765
BglI	GCCNNNNNGGC	1 cut(s)	1010
BglII	AGATCT	1 cut(s)	223
BisI	GCNGC	7 cut(s)	33, 294, 402, 516, 639, 1206, 1350
BlsI	GCNGC	7 cut(s)	34, 295, 403, 517, 640, 1207, 1351
Bme1390I	CCNGG	4 cut(s)	321, 376, 571, 623
Bme18I	GGWCC	1 cut(s)	626
BmgT120I	GGNCC	1 cut(s)	626
BmiI	GGNNCC	3 cut(s)	313, 627, 1003
BmrFI	CCNGG	4 cut(s)	321, 376, 571, 623
BmrI	ACTGGG	1 cut(s)	135
BmuI	ACTGGG	1 cut(s)	135
BoxI	GACNNNNGTC	1 cut(s)	840
BpiI	GAAGAC	1 cut(s)	533
BpmI	CTGGAG	2 cut(s)	747, 1230
BpuEI	CTTGAG	4 cut(s)	204, 212, 798, 917
BpuMI	CCSGG	1 cut(s)	571
BsaAI	YACGTR	1 cut(s)	171
BsaBI	GATNNNNATC	2 cut(s)	578, 966
BsaI	GGTCTC	1 cut(s)	245
BsaJI	CCNNGG	6 cut(s)	319, 569, 622, 1176, 1198, 1249
BsaWI	WCCGGW	1 cut(s)	1291
BsaXI	ACNNNNNCTCC	2 cut(s)	155, 185
Bse1I	ACTGG	3 cut(s)	130, 493, 664
Bse8I	GATNNNNATC	2 cut(s)	578, 966
BseBI	CCWGG	3 cut(s)	321, 376, 623
BseDI	CCNNGG	6 cut(s)	319, 569, 622, 1176, 1198, 1249
BseGI	GGATG	5 cut(s)	438, 517, 696, 1045, 1388
BseJI	GATNNNNATC	2 cut(s)	578, 966
BseMII	CTCAG	1 cut(s)	486
BseNI	ACTGG	3 cut(s)	130, 493, 664
BseRI	GAGGAG	2 cut(s)	905, 930
BseSI	GKGCMC	2 cut(s)	306, 667
BseXI	GCAGC	6 cut(s)	19, 388, 502, 625, 1217, 1361
BsgI	GTGCAG	2 cut(s)	501, 1224
Bsh1236I	CGCG	1 cut(s)	293
BshFI	GGCC	3 cut(s)	374, 1013, 1241
BshNI	GGYRCC	1 cut(s)	1001
BsiHKAI	GWGCWC	1 cut(s)	667
BsiSI	CCGG	2 cut(s)	571, 1292
BslFI	GGGAC	1 cut(s)	639
BsmAI	GTCTC	4 cut(s)	158, 172, 245, 475
BsmFI	GGGAC	1 cut(s)	639
BsmI	GAATGC	1 cut(s)	1390
BsnI	GGCC	3 cut(s)	374, 1013, 1241
Bso31I	GGTCTC	1 cut(s)	245
Bsp1286I	GDGCHC	2 cut(s)	306, 667
Bsp143I	GATC	3 cut(s)	223, 448, 1288
Bsp19I	CCATGG	1 cut(s)	1249
BspACI	CCGC	1 cut(s)	293
BspANI	GGCC	3 cut(s)	374, 1013, 1241
BspCNI	CTCAG	1 cut(s)	485
BspFNI	CGCG	1 cut(s)	293
BspLI	GGNNCC	3 cut(s)	313, 627, 1003
BspMAI	CTGCAG	1 cut(s)	643
BspMI	ACCTGC	1 cut(s)	765
BspPI	GGATC	1 cut(s)	1283
BspT107I	GGYRCC	1 cut(s)	1001
BspTNI	GGTCTC	1 cut(s)	245
BsrI	ACTGG	3 cut(s)	130, 493, 664
BssECI	CCNNGG	6 cut(s)	319, 569, 622, 1176, 1198, 1249
BssMI	GATC	3 cut(s)	223, 448, 1288
BssT1I	CCWWGG	3 cut(s)	1176, 1198, 1249
Bst2UI	CCWGG	3 cut(s)	321, 376, 623
Bst4CI	ACNGT	2 cut(s)	839, 1035
Bst6I	CTCTTC	5 cut(s)	59, 79, 170, 811, 991
BstBAI	YACGTR	1 cut(s)	171
BstC8I	GCNNGC	1 cut(s)	903
BstDEI	CTNAG	3 cut(s)	354, 472, 551
BstDSI	CCRYGG	1 cut(s)	1249
BstF5I	GGATG	5 cut(s)	438, 517, 696, 1045, 1388
BstFNI	CGCG	1 cut(s)	293
BstH2I	RGCGCY	1 cut(s)	18
BstHHI	GCGC	1 cut(s)	17
BstKTI	GATC	3 cut(s)	226, 451, 1291
BstMAI	GTCTC	4 cut(s)	158, 172, 245, 475
BstMBI	GATC	3 cut(s)	223, 448, 1288
BstNI	CCWGG	3 cut(s)	321, 376, 623
BstNSI	RCATGY	3 cut(s)	70, 905, 989
BstPAI	GACNNNNGTC	1 cut(s)	840
BstSCI	CCNGG	4 cut(s)	319, 374, 569, 621
BstSFI	CTRYAG	1 cut(s)	639
BstSLI	GKGCMC	2 cut(s)	306, 667
BstUI	CGCG	1 cut(s)	293
BstV1I	GCAGC	6 cut(s)	19, 388, 502, 625, 1217, 1361
BstV2I	GAAGAC	1 cut(s)	533
BstX2I	RGATCY	2 cut(s)	223, 1288
BstYI	RGATCY	2 cut(s)	223, 1288
BsuRI	GGCC	3 cut(s)	374, 1013, 1241
BtgI	CCRYGG	1 cut(s)	1249
BtsCI	GGATG	5 cut(s)	438, 517, 696, 1045, 1388
BtsI	GCAGTG	1 cut(s)	648
BtsIMutI	CAGTG	4 cut(s)	123, 505, 648, 1268
BveI	ACCTGC	1 cut(s)	765
Cac8I	GCNNGC	1 cut(s)	903
CfoI	GCGC	1 cut(s)	17
Cfr13I	GGNCC	1 cut(s)	626
CseI	GACGC	1 cut(s)	527
Csp6I	GTAC	1 cut(s)	262
CspCI	CAANNNNNGTGG	2 cut(s)	1038, 1073
CviQI	GTAC	1 cut(s)	262
DdeI	CTNAG	3 cut(s)	354, 472, 551
DpnI	GATC	3 cut(s)	225, 450, 1290
DpnII	GATC	3 cut(s)	223, 448, 1288
DraI	TTTAAA	1 cut(s)	1030
EaeI	YGGCCR	3 cut(s)	372, 1011, 1239
Eam1104I	CTCTTC	5 cut(s)	59, 79, 170, 811, 991
EarI	CTCTTC	5 cut(s)	59, 79, 170, 811, 991
Eco130I	CCWWGG	3 cut(s)	1176, 1198, 1249
Eco31I	GGTCTC	1 cut(s)	245
Eco47I	GGWCC	1 cut(s)	626
Eco57I	CTGAAG	1 cut(s)	426
EcoRI	GAATTC	1 cut(s)	326
EcoRII	CCWGG	3 cut(s)	319, 374, 621
EcoT14I	CCWWGG	3 cut(s)	1176, 1198, 1249
EcoT22I	ATGCAT	1 cut(s)	1390
ErhI	CCWWGG	3 cut(s)	1176, 1198, 1249
FalI	AAGNNNNNCTT	4 cut(s)	399, 431, 1336, 1368
FaqI	GGGAC	1 cut(s)	639
FbaI	TGATCA	1 cut(s)	448
Fnu4HI	GCNGC	7 cut(s)	33, 294, 402, 516, 639, 1206, 1350
FokI	GGATG	5 cut(s)	445, 524, 703, 1032, 1375
Fsp4HI	GCNGC	7 cut(s)	33, 294, 402, 516, 639, 1206, 1350
FspBI	CTAG	1 cut(s)	741
GlaI	GCGC	1 cut(s)	16
GluI	GCNGC	7 cut(s)	33, 294, 402, 516, 639, 1206, 1350
GsuI	CTGGAG	2 cut(s)	747, 1230
HaeII	RGCGCY	1 cut(s)	18
HaeIII	GGCC	3 cut(s)	374, 1013, 1241
HapII	CCGG	2 cut(s)	571, 1292
HgaI	GACGC	1 cut(s)	527
HhaI	GCGC	1 cut(s)	17
Hin6I	GCGC	1 cut(s)	15
HinP1I	GCGC	1 cut(s)	15
HinfI	GANTC	7 cut(s)	114, 618, 694, 707, 737, 818, 1273
HpaII	CCGG	2 cut(s)	571, 1292
HphI	GGTGA	6 cut(s)	203, 271, 335, 689, 875, 1109
Hpy166II	GTNNAC	3 cut(s)	264, 665, 1069
Hpy188I	TCNGA	2 cut(s)	712, 1138
Hpy188III	TCNNGA	6 cut(s)	221, 229, 815, 825, 845, 957
Hpy8I	GTNNAC	3 cut(s)	264, 665, 1069
Hpy99I	CGWCG	3 cut(s)	66, 122, 549
HpyAV	CCTTC	1 cut(s)	860
HpyCH4III	ACNGT	2 cut(s)	839, 1035
HpyCH4IV	ACGT	1 cut(s)	170
HpyF3I	CTNAG	3 cut(s)	354, 472, 551
HpySE526I	ACGT	1 cut(s)	170
HspAI	GCGC	1 cut(s)	15
Ksp22I	TGATCA	1 cut(s)	448
Kzo9I	GATC	3 cut(s)	223, 448, 1288
LmnI	GCTCC	7 cut(s)	40, 358, 892, 917, 1181, 1211, 1414
Lsp1109I	GCAGC	6 cut(s)	19, 388, 502, 625, 1217, 1361
MaeI	CTAG	1 cut(s)	741
MaeII	ACGT	1 cut(s)	170
MaeIII	GTNAC	4 cut(s)	121, 139, 500, 643
MalI	GATC	3 cut(s)	225, 450, 1290
MboI	GATC	3 cut(s)	223, 448, 1288
MboII	GAAGA	7 cut(s)	46, 66, 187, 419, 533, 798, 1008
MflI	RGATCY	2 cut(s)	223, 1288
MhlI	GDGCHC	2 cut(s)	306, 667
MlsI	TGGCCA	3 cut(s)	374, 1013, 1241
MluCI	AATT	7 cut(s)	326, 349, 427, 698, 924, 936, 1254
MluNI	TGGCCA	3 cut(s)	374, 1013, 1241
MlyI	GAGTC	2 cut(s)	123, 746
Mox20I	TGGCCA	3 cut(s)	374, 1013, 1241
Mph1103I	ATGCAT	1 cut(s)	1390
MscI	TGGCCA	3 cut(s)	374, 1013, 1241
MseI	TTAA	5 cut(s)	417, 578, 788, 1029, 1299
MslI	CAYNNNNRTG	3 cut(s)	151, 689, 990
Msp20I	TGGCCA	3 cut(s)	374, 1013, 1241
MspA1I	CMGCKG	1 cut(s)	1208
MspI	CCGG	2 cut(s)	571, 1292
MspR9I	CCNGG	4 cut(s)	321, 376, 571, 623
Mva1269I	GAATGC	1 cut(s)	1390
MvaI	CCWGG	3 cut(s)	321, 376, 623
MvnI	CGCG	1 cut(s)	293
NciI	CCSGG	1 cut(s)	571
NcoI	CCATGG	1 cut(s)	1249
NdeII	GATC	3 cut(s)	223, 448, 1288
NlaIV	GGNNCC	3 cut(s)	313, 627, 1003
NmuCI	GTSAC	3 cut(s)	121, 500, 643
NsiI	ATGCAT	1 cut(s)	1390
NspI	RCATGY	3 cut(s)	70, 905, 989
PaeI	GCATGC	1 cut(s)	905
PctI	GAATGC	1 cut(s)	1390
PfeI	GAWTC	5 cut(s)	618, 694, 707, 818, 1273
PkrI	GCNGC	7 cut(s)	34, 295, 403, 517, 640, 1207, 1351
PleI	GAGTC	2 cut(s)	122, 745
PpsI	GAGTC	2 cut(s)	122, 745
Ppu21I	YACGTR	1 cut(s)	171
PshAI	GACNNNNGTC	1 cut(s)	840
PshBI	ATTAAT	1 cut(s)	578
Psp6I	CCWGG	3 cut(s)	319, 374, 621
PspGI	CCWGG	3 cut(s)	319, 374, 621
PspN4I	GGNNCC	3 cut(s)	313, 627, 1003
PspPI	GGNCC	1 cut(s)	626
PstI	CTGCAG	1 cut(s)	643
PsuI	RGATCY	2 cut(s)	223, 1288
PvuII	CAGCTG	1 cut(s)	1208
RsaI	GTAC	1 cut(s)	263
RsaNI	GTAC	1 cut(s)	262
RseI	CAYNNNNRTG	3 cut(s)	151, 689, 990
SaqAI	TTAA	5 cut(s)	417, 578, 788, 1029, 1299
SatI	GCNGC	7 cut(s)	33, 294, 402, 516, 639, 1206, 1350
Sau3AI	GATC	3 cut(s)	223, 448, 1288
Sau96I	GGNCC	1 cut(s)	626
SchI	GAGTC	2 cut(s)	123, 746
ScrFI	CCNGG	4 cut(s)	321, 376, 571, 623
SduI	GDGCHC	2 cut(s)	306, 667
SfcI	CTRYAG	1 cut(s)	639
SinI	GGWCC	1 cut(s)	626
SmiMI	CAYNNNNRTG	3 cut(s)	151, 689, 990
SmlI	CTYRAG	4 cut(s)	219, 227, 813, 896
SmoI	CTYRAG	4 cut(s)	219, 227, 813, 896
SphI	GCATGC	1 cut(s)	905
Sse9I	AATT	7 cut(s)	326, 349, 427, 698, 924, 936, 1254
SsiI	CCGC	1 cut(s)	293
SspI	AATATT	1 cut(s)	1227
SspMI	CTAG	1 cut(s)	741
StyD4I	CCNGG	4 cut(s)	319, 374, 569, 621
StyI	CCWWGG	3 cut(s)	1176, 1198, 1249
TaaI	ACNGT	2 cut(s)	839, 1035
TaiI	ACGT	1 cut(s)	173
TaqI	TCGA	2 cut(s)	844, 1358
TasI	AATT	7 cut(s)	326, 349, 427, 698, 924, 936, 1254
TauI	GCSGC	1 cut(s)	296
TfiI	GAWTC	5 cut(s)	618, 694, 707, 818, 1273
Tru1I	TTAA	5 cut(s)	417, 578, 788, 1029, 1299
Tru9I	TTAA	5 cut(s)	417, 578, 788, 1029, 1299
TscAI	CASTG	4 cut(s)	130, 505, 648, 1275
TseFI	GTSAC	3 cut(s)	121, 500, 643
TseI	GCWGC	6 cut(s)	32, 401, 515, 638, 1205, 1349
Tsp45I	GTSAC	3 cut(s)	121, 500, 643
TspDTI	ATGAA	5 cut(s)	248, 553, 623, 1034, 1300
TspRI	CASTG	4 cut(s)	130, 505, 648, 1275
VneI	GTGCAC	1 cut(s)	663
VpaK11BI	GGWCC	1 cut(s)	626
VspI	ATTAAT	1 cut(s)	578
XapI	RAATTY	3 cut(s)	326, 924, 936
XceI	RCATGY	3 cut(s)	70, 905, 989
XspI	CTAG	1 cut(s)	741
Zsp2I	ATGCAT	1 cut(s)	1390

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.