Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr09

Orthogroup ID

OG0017342

Physical Location & Seq

Genomic Coordinates Forward (+)

15177862 .. 15184085

Gene Structure 6224 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD09G1177100.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 4629 bp

ATGGCCGGTATAGACTCCTCCTTCGATTTCGAACAATCCTCCTCCAGTCACCGCCCGCCACGCCACCCCACGCCCTTTAGCTCCAGCTCCTTCACCCCGGTCAGCTCCAACTCCCAGTTTAACCAAAGCCGAACCCCTGGCAGCCGGAGGTCCCGCCACACCACGCCCCCCACGACTCCATTTGCCGCAGACAACGACAAGTCGTGGCAAGGCGAGATTTCGTGGCAGTTTGAGCCAACCGGGTGGAGCGACACGCGAAATTTGGGCTCAGTTTTGAGCCCATGGGCCACGGCAAGCACAACCTCCGAGGCCCACATAGTTCGCCGCTCCGCCAATTACTACTACCTCTCAAGAACTAGCAGACGCGCTGCCAGGAATAACCCAAATTACAATTCTGTCCCTGATGGCAGGCTTGAGCTTCAAAGCTATGTTGCTCCTCCTAGGGTTAATAATGGGAATGGCAACATTAATTTGAATAATAATAGTGAGAGATCTTTAATTTTTGCAAATAGTAGCTATGGTACACAACATAAAAAGCCCCCAAGATTGGAAAAAATAAAGGAGTTGGGAAGTGGGAATTATAGCGGAAGTGGTCCATTAGCTAGAAAAGATGTGCTCGGTCTGATCGACTATGATCATCCACCAAACCGGGCAGAAGATGACGCATCCGAAGTTTTGGGTCATGGGATGTCACATAATTTGGGTCATGACCTTGGTGGTCATTTTTACGATCATGGCCATCACAGTCACCATGGTACGTCAAAAATTATAGGACACGATGACTATGGTCGCGGGTCGTCACATGTGGGACATACTCATCATCTTCACGGTTATGATGATCATGCATGGCGATCAACAGTCTCTGGCCAACATAACGGCGGCGTTGATGGGTATGCCGATAGCGATCAAGGTTCGGGTTACGATGAAGAGGATGATGAAGAAGAAGATGCCGTGCCACCAAAGCAAGTAGGTTTGCTCAGCTTGTTCAAGTATTCAACAAAGTGGGATATGGTTCTTGTGTTTCTGGGATGCATTGGTGCTCTTATTAATGGAGGGTCTCTTCCATGGTACTCGTTTCTTTTCGGAACGTTTGTGAACAAGATTGCTATTGAATCAAAGTACGCTGACAAGACTCAGATGATGGATGATATCGAAACGATAGCCCTGGATATGGTTGGATTAGCAGCAATAGTTGTAGTTGGAGCATACATGGAGATTACCTGTTGGAGAATGGTAGGGGAGAGATCTGCTCAAAGAATAAGAAGAGAATATCTAAGAGCAGTTCTACGGCAGGACATTAGCTTTTTCGACACAGAGATCGCCGCCGGCGACATTATGCATGGAATTTCTAGTGATGTTGCTCAAATCCAAGAAGTTATGGGGGAGAAGATGGCACATTTCATTCACCACATATGTACTTTCATATGTGGATACACCGTTGGATTTCTGAAGTCATGGAAGATCTCTCTGGTAGTCCTCTCAGTCATACCACTGATGATGTTCTGTGGTATCGCTTACAAAGCGGTTTATGTTGGCCTCGCTACGAAAGAAGAGGTTTCTTACCGTAAAGCTGGTAATGTAGCCGAGCAAGCGATCAGTTCAATCAGAACTGTGTTTTCCTTTGTTGCAGAGGATCTTCTGGCTGAAAGATACGCAGATTTATTGAACAAATTGGTGCCTTTTGGAGCAAGGATCGGCTTCGCTAAGGGTGCTGGAGTGGGAGTTATCTATCTGGTTTCGTATTCAACATGGGCGTTGGCTTTCTGGTATGGTAGTATTTTGGTTTCTAAGGGAGAGATCTCTGGAGGCGCCGCCATTGCTTGTTTCTTCGGCGTCAATGTTGGGGGAAGGGGCTTGGCGTTGTCCCTATCATACTTCGCTCAGTTTTCACAAGGCACAGTAGCAGCGGGCCGGGTATTTGAAATTATAGACAGAGTTCCGGAGATAGACCCCTACAGCTCAGTAGGCAGGACCCTGCCGAGTACTCGAGGAAGGATTGAATTTAAAGGCGTTTCTTTCTCATACCCATCTCGTATGGATGCTCCGATTCTTCATTCCCTGAGTCTGGTTATCCCATCTTCGAAGAGTGTAGCACTTGTTGGCGCTAGCGGAGGTGGAAAGTCCACCATTTTCGCTCTTATAGAGAGGTTCTATGACCCTAACCAAGGTACAATCACATTGGATGGTCATGATTTAAGGATGCTTCAGGTGAAATGGCTAAGAGATCAGATAGGTATGGTCGGCCAGGAGCCCGTACTCTTTGCCACAAGTATATTAGAAAATGTGTTAATGGGGAAGGAGAATGCCACCAAGAAGGAAGCGATTTCCGCCTGCATTGCTGCCAATGCCAACAGCTTCATTTCTGGCCTTCCACAAGGCTATGACACTCAGGTTGGAGACAGAGGAACACTGCTGTCAGGAGGTCAGAAGCAAAGAATCGCATTGGCTCGAGCGATGATCAAAGACCCTAGAATCCTTCTCTTGGATGAACCTACCAGCGCCTTAGACCCTGAATCCGAGGCTGCAGTCCAAAAGGCTATTGACAAGATCTCCTCAGGCCGAACATCGATTGTAATTGCTCACAGGCTATCGACAGTAAGAAATTCTCACACCATCGTTGTTCTTGACTCTGGCTCTGTGGTTGAGATTGGTAATCATCGCCAGCTCATGGAAAAAGCAGGTGCCTACTATAGCCTTGTTGAGCTTGCCGCTGATGGTGTAACAAAACCTTTGTTGAAACAAAATGATAATCAGAAAGTTACTCAGTTTTCAGTGTCTGATATGCATGATTTGTCAAGATCGCCATTCGCTCAAGAGAAAAGCCAAGTAGAGGAGAAAGATGTCCAAAAACAAAAACCAAAAAAGGTTAAACTTTTGGATATATGGTTGTTACAAAGACCAGAGGTTCCAATGCTCTTAGTAGGGTTCTTCTTGGGTATGAATGGAGGTGCAATTTTGTCTATCTTTCCTTTTATTCTCGGCCTAGCCCTTGAAATATATTTCGATAATGACCCATCAAAAATTAACAAAAAAATTGACCCTCTTTGTTTAGCACTTGTTGGGCTTGGCCTTGGGAACATACTCTTAATGACAGGACAACAAGGGTTGTGTGGCTGGGCTGGAACAAAACTCACATTGAGAGTGCGAAACCTCCTGTTTCGTTCCATACTAAAACAAGAGCCTGGTTGGTTTGACTCCGAAGAAAATTCGAAATCAGTTCTGGTCTCGAGGCTCTCAGTTGATTCTGTCAGTTTTCGTTCAGTCCATATTGATCGATTATCAGTCTTGTTGATGGGTTTGAGTTCAGCCATCGTGGGACTTGGTTTGTCCCTTTGGATTAATAGGTGGCTAACTCTTTTGGCAGCTGCTCTCACTCCTTTGACTCTCGGTGCAAGTTACTTGAGCTTGATCATAAATTTAGGGCCAAAACTCGACAATGATGCTTATGCGAAAGCGAGCAACATTGCTTCTGGTGCTGTTTCAAACATAAGGACAGTCACAACATTTTCTGCTCAGCAACAGTTGGTTAAGTCCTTCGAAAGAGCTTTATTGGGGCCAAAGAGAAAATCAGTTAAGAGGTCACAAATCATGGGCCTAACACTAGGGTTTTCTCAAGGTGTTATGTATGGAGCATACACCTTAACCCTTTGGTTTGGTGGTTACCTTGTGAAAGAAGGCAAAGCAAGCTTCGGCGATGTGTATCAAATTTTTCTTATCCTTGTTTTGAGTTCGTTTTCTGTTGGACAATTAGCCGGTCTTGCACCAGACACATCCATGGCTTCAATAGCAATTCCAGCAGTTTTCGATATCATTACTCGCAAGCCATTAATCAGCAGCAGCAGCAGCAGAGAAAAAGAAAGGAAGCTTGACCGGTCGAAACCATTGGACATTCAATTCAAAATGGTGACATTCGCCTACCCTTCTAGGCCAGATGTGACCGTGCTGAGTGACTTTTGCTTGAAGGTCAAAGGCGGTAGCACGGTGGCATTGGCGGGCGGAAGCGGGTCCGGGAAATCGACGGTGATATGGTTAATACAGAGGTTTTATGATCCAATTCAAGGGAAGGTGCTGATGGGAGGGGTGGATTTGAGGGAGATAAATCTGAAGTGGTTGAGAAGGCAAATAGCTCTAGTGGGTCAAGAGCCTACATTGTTTGCAGGCACTATGAGAGAGAATATTGCTTTTGGAAACCCTAATGCTTCATGGTCTGAAATTGAAGACGCTGCAAGGGAAGCTTATATCCACAACTTCATTAGTAGCCTCCCTCAAGGCTATGAAACTCAGGTTGGTGAGAGTGGGACCCAGCTATCTGGGGGCCAGAAGCAAAGGATTGCCATAGCAAGGGCTATACTGAAGAAATCAAAGGTACTACTTCTAGACGAAGCAAGTAGTGCACTGGATTTGGAATCAGAGAGGCACATACAAGAGGCACTTAAGAAGATCAGCAAAAGGGCTACAACCATCATAGTGGCTCACCGACTTTCGACAATCCGAGAGGCCGATATGATAGCGGTGATGAGCAACGGTGCCATCACAGAATATGGGAGCCATGATGCACTTATGGCCTCTCACCTTAACGGTGTGTACGCTAGCTTGGTGCGTGCAGAAACTGAAGCCAATGCGTTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0005215 GO:0005575 GO:0005623 GO:0005886 GO:0006810 GO:0007275 GO:0008150 GO:0008361 GO:0009314 GO:0009411 GO:0009416 GO:0009605 GO:0009606 GO:0009628 GO:0009629 GO:0009630 GO:0009637 GO:0009639 GO:0009640 GO:0009653 GO:0009719 GO:0009725 GO:0009733 GO:0009791 GO:0009908 GO:0009914 GO:0009926 GO:0009958 GO:0009966 GO:0009987 GO:0010033 GO:0010218 GO:0010315 GO:0010329 GO:0010540 GO:0010541 GO:0010646 GO:0010817 GO:0010928 GO:0015562 GO:0016020 GO:0016043 GO:0022414 GO:0022622 GO:0022857 GO:0023051 GO:0032501 GO:0032502 GO:0032535 GO:0042221 GO:0043473 GO:0043476 GO:0043478 GO:0043479 GO:0043480 GO:0043481 GO:0044464 GO:0048364 GO:0048367 GO:0048437 GO:0048438 GO:0048443 GO:0048466 GO:0048527 GO:0048528 GO:0048583 GO:0048608 GO:0048646 GO:0048731 GO:0048827 GO:0048856 GO:0048859 GO:0050789 GO:0050794 GO:0050896 GO:0051179 GO:0051234 GO:0055085 GO:0060918 GO:0061458 GO:0065007 GO:0065008 GO:0071840 GO:0071944 GO:0080161 GO:0090066 GO:0090567 GO:0090691 GO:0090696 GO:0099402

KEGG Pathways

Metabolic & Signaling

ko02010 ko04976 ko05206 ko05226 map02010 map04976 map05206 map05226

Pfam Domains

Protein Families

ABC_membrane ABC_tran

Protein Analysis

1543

Amino Acids

168.27

Weight (kDa)

8.57

Isoelectric Point (pI)

41.03

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ABC_membrane	PF00664	340 - 613	3e-54	ABC transporter transmembrane region
ABC_tran	PF00005	684 - 833	2.1e-31	ABC transporter
ABC_membrane	PF00664	972 - 1242	2e-47	ABC transporter transmembrane region
SMC_N	PF02463	1172 - 1506	5.4e-07	RecF/RecN/SMC N terminal domain
ABC_tran	PF00005	1316 - 1463	2.5e-30	ABC transporter
ABC_ATPase	PF09818	1412 - 1514	7.2e-06	P-loop domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

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Orthologous Genes (Group: OG0017342)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g35260
malus_domestica	MD09G1177100.v1.1 MD17G1149200.v1.1
prunus_persica	Prupe.3G036400_v2.0.a1
rosa_chinensis	RchiOBHm_Chr2g0146621
rosa_laevigata	RLG00000020211
rosa_multiflora	Rmu_sc0001986.1_g000032
rosa_roxburghii	Rroxscaffold_2G00100000
rosa_rugosa	Rorug02G0395800 Rorug02G0395800
rosa_samantha	Rh2BG464800 Rh2DG473800
rosa_wichuraiana	Rw2G036930

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	2669
Acc36I	ACCTGC	1 cut(s)	2669
AccB1I	GGYRCC	4 cut(s)	1675, 1808, 2681, 4526
AccB7I	CCANNNNNTGG	1 cut(s)	2668
AccBSI	CCGCTC	1 cut(s)	327
AccII	CGCG	3 cut(s)	256, 366, 792
AccIII	TCCGGA	1 cut(s)	1939
AclI	AACGTT	1 cut(s)	1088
AclWI	GGATC	3 cut(s)	1641, 1700, 4043
AcoI	YGGCCR	4 cut(s)	3, 736, 865, 2242
AcsI	RAATTY	7 cut(s)	259, 1344, 2000, 2602, 3205, 3415, 3705
AcuI	CTGAAG	4 cut(s)	1469, 2189, 4124, 4373
AcyI	GRCGYC	2 cut(s)	1809, 1833
AfiI	CCNNNNNNNGG	9 cut(s)	547, 1171, 2065, 2165, 2482, 2668, 2830, 4058, 4341
AflII	CTTAAG	1 cut(s)	4433
AflIII	ACRYGT	1 cut(s)	802
AgeI	ACCGGT	1 cut(s)	3870
AjnI	CCWGG	5 cut(s)	136, 371, 1164, 2244, 3181
AjuI	GAANNNNNNNTTGG	4 cut(s)	376, 408, 4269, 4301
Alw21I	GWGCWC	3 cut(s)	618, 1042, 4396
Alw26I	GTCTC	4 cut(s)	865, 1062, 2391, 3229
Alw44I	GTGCAC	1 cut(s)	4392
AlwI	GGATC	3 cut(s)	1641, 1700, 4043
AlwNI	CAGNNNCTG	3 cut(s)	863, 2777, 4610
Ama87I	CYCGRG	3 cut(s)	1986, 2448, 3226
Aor13HI	TCCGGA	1 cut(s)	1939
ApaLI	GTGCAC	1 cut(s)	4392
ApoI	RAATTY	7 cut(s)	259, 1344, 2000, 2602, 3205, 3415, 3705
ArsI	GACNNNNNNTTYG	1 cut(s)	37
AseI	ATTAAT	4 cut(s)	468, 1047, 3339, 3827
AsiGI	ACCGGT	1 cut(s)	3870
AspA2I	CCTAGG	1 cut(s)	440
AspLEI	GCGC	4 cut(s)	368, 1811, 2105, 2501
AsuC2I	CCSGG	5 cut(s)	98, 241, 650, 1913, 4009
AsuII	TTCGAA	4 cut(s)	30, 2081, 3209, 3537
AsuNHI	GCTAGC	2 cut(s)	2105, 4589
AvaI	CYCGRG	3 cut(s)	1986, 2448, 3226
AvaII	GGWCC	5 cut(s)	150, 593, 1971, 4005, 4299
AvrII	CCTAGG	1 cut(s)	440
AxyI	CCTNAGG	1 cut(s)	2554
BaeGI	GKGCMC	1 cut(s)	4396
BalI	TGGCCA	2 cut(s)	738, 867
BanI	GGYRCC	4 cut(s)	1675, 1808, 2681, 4526
BanII	GRGCYC	3 cut(s)	269, 281, 2253
BbsI	GAAGAC	1 cut(s)	4224
Bbv12I	GWGCWC	3 cut(s)	618, 1042, 4396
BceAI	ACGGC	4 cut(s)	306, 892, 935, 1304
BcgI	CGANNNNNNTGC	2 cut(s)	3422, 3456
BciT130I	CCWGG	5 cut(s)	138, 373, 1166, 2246, 3183
BciVI	GTATCC	1 cut(s)	1424
BclI	TGATCA	4 cut(s)	634, 838, 2457, 3408
BcnI	CCSGG	5 cut(s)	98, 241, 650, 1913, 4009
BcoDI	GTCTC	4 cut(s)	865, 1062, 2391, 3229
BfmI	CTRYAG	3 cut(s)	1954, 2523, 2689
BfoI	RGCGCY	3 cut(s)	1812, 2106, 2502
BfrI	CTTAAG	1 cut(s)	4433
BfuAI	ACCTGC	1 cut(s)	2669
BfuI	GTATCC	1 cut(s)	1424
BglII	AGATCT	5 cut(s)	491, 1244, 1461, 1797, 2547
BlnI	CCTAGG	1 cut(s)	440
BlpI	GCTNAGC	2 cut(s)	977, 3513
BmcAI	AGTACT	1 cut(s)	1984
Bme18I	GGWCC	5 cut(s)	150, 593, 1971, 4005, 4299
BmeT110I	CYCGRG	3 cut(s)	1986, 2448, 3226
BmrI	ACTGGG	1 cut(s)	109
BmsI	GCATC	7 cut(s)	674, 937, 1019, 2029, 2190, 3430, 4543
BmtI	GCTAGC	2 cut(s)	2109, 4593
BmuI	ACTGGG	1 cut(s)	109
BoxI	GACNNNNGTC	1 cut(s)	786
BpiI	GAAGAC	1 cut(s)	4224
BplI	GAGNNNNNCTC	2 cut(s)	1234, 1266
BpmI	CTGGAG	4 cut(s)	28, 67, 1734, 1824
Bpu10I	CCTNAGC	1 cut(s)	1704
Bpu1102I	GCTNAGC	2 cut(s)	977, 3513
Bpu14I	TTCGAA	4 cut(s)	30, 2081, 3209, 3537
BpuEI	CTTGAG	6 cut(s)	334, 434, 2796, 3421, 3597, 4251
BpuMI	CCSGG	5 cut(s)	98, 241, 650, 1913, 4009
Bsa29I	ATCGAT	2 cut(s)	2567, 3274
BsaBI	GATNNNNATC	2 cut(s)	903, 3699
BsaHI	GRCGYC	2 cut(s)	1809, 1833
BsaI	GGTCTC	2 cut(s)	1062, 3229
BsaWI	WCCGGW	2 cut(s)	1939, 3870
BsaXI	ACNNNNNCTCC	4 cut(s)	1707, 1737, 2534, 2564
Bsc4I	CCNNNNNNNGG	9 cut(s)	547, 1171, 2065, 2165, 2482, 2668, 2830, 4058, 4341
Bse118I	RCCGGY	4 cut(s)	5, 1325, 3752, 3870
Bse1I	ACTGG	3 cut(s)	45, 115, 4401
Bse21I	CCTNAGG	1 cut(s)	2554
Bse3DI	GCAATG	3 cut(s)	1815, 2334, 3462
Bse8I	GATNNNNATC	2 cut(s)	903, 3699
BseAI	TCCGGA	1 cut(s)	1939
BseBI	CCWGG	5 cut(s)	138, 373, 1166, 2246, 3183
BseCI	ATCGAT	2 cut(s)	2567, 3274
BseJI	GATNNNNATC	2 cut(s)	903, 3699
BseLI	CCNNNNNNNGG	9 cut(s)	547, 1171, 2065, 2165, 2482, 2668, 2830, 4058, 4341
BseMI	GCAATG	3 cut(s)	1815, 2334, 3462
BseNI	ACTGG	3 cut(s)	45, 115, 4401
BseRI	GAGGAG	5 cut(s)	7, 31, 426, 2542, 2846
BseSI	GKGCMC	1 cut(s)	4396
BseYI	CCCAGC	2 cut(s)	3114, 4302
BsgI	GTGCAG	1 cut(s)	4623
Bsh1236I	CGCG	3 cut(s)	256, 366, 792
Bsh1285I	CGRYCG	1 cut(s)	3875
BshNI	GGYRCC	4 cut(s)	1675, 1808, 2681, 4526
BshTI	ACCGGT	1 cut(s)	3870
BshVI	ATCGAT	2 cut(s)	2567, 3274
BsiEI	CGRYCG	1 cut(s)	3875
BsiHKAI	GWGCWC	3 cut(s)	618, 1042, 4396
BsiHKCI	CYCGRG	3 cut(s)	1986, 2448, 3226
BslFI	GGGAC	7 cut(s)	136, 383, 822, 1849, 3313, 3330, 4312
BslI	CCNNNNNNNGG	9 cut(s)	547, 1171, 2065, 2165, 2482, 2668, 2830, 4058, 4341
BsmAI	GTCTC	4 cut(s)	865, 1062, 2391, 3229
BsmFI	GGGAC	7 cut(s)	136, 383, 822, 1849, 3313, 3330, 4312
BsmI	GAATGC	1 cut(s)	2308
Bso31I	GGTCTC	2 cut(s)	1062, 3229
BsoBI	CYCGRG	3 cut(s)	1986, 2448, 3226
Bsp119I	TTCGAA	4 cut(s)	30, 2081, 3209, 3537
Bsp1286I	GDGCHC	6 cut(s)	269, 281, 618, 1042, 2253, 4396
Bsp13I	TCCGGA	1 cut(s)	1939
Bsp1720I	GCTNAGC	2 cut(s)	977, 3513
Bsp19I	CCATGG	4 cut(s)	281, 751, 1064, 3774
BspDI	ATCGAT	2 cut(s)	2567, 3274
BspEI	TCCGGA	1 cut(s)	1939
BspFNI	CGCG	3 cut(s)	256, 366, 792
BspHI	TCATGA	2 cut(s)	706, 2188
BspMAI	CTGCAG	1 cut(s)	2527
BspMI	ACCTGC	1 cut(s)	2669
BspOI	GCTAGC	2 cut(s)	2109, 4593
BspPI	GGATC	3 cut(s)	1641, 1700, 4043
BspT104I	TTCGAA	4 cut(s)	30, 2081, 3209, 3537
BspT107I	GGYRCC	4 cut(s)	1675, 1808, 2681, 4526
BspTI	CTTAAG	1 cut(s)	4433
BspTNI	GGTCTC	2 cut(s)	1062, 3229
BsrBI	CCGCTC	1 cut(s)	327
BsrDI	GCAATG	3 cut(s)	1815, 2334, 3462
BsrFI	RCCGGY	4 cut(s)	5, 1325, 3752, 3870
BsrI	ACTGG	3 cut(s)	45, 115, 4401
BssAI	RCCGGY	4 cut(s)	5, 1325, 3752, 3870
BssNI	GRCGYC	2 cut(s)	1809, 1833
BssT1I	CCWWGG	8 cut(s)	281, 440, 712, 751, 1064, 2164, 3070, 3774
Bst2UI	CCWGG	5 cut(s)	138, 373, 1166, 2246, 3183
Bst6I	CTCTTC	5 cut(s)	921, 1065, 1258, 1545, 2078
BstACI	GRCGYC	2 cut(s)	1809, 1833
BstAFI	CTTAAG	1 cut(s)	4433
BstAPI	GCANNNNNTGC	1 cut(s)	4391
BstBI	TTCGAA	4 cut(s)	30, 2081, 3209, 3537
BstDSI	CCRYGG	5 cut(s)	281, 288, 751, 1064, 3774
BstEII	GGTNACC	1 cut(s)	3659
BstENI	CCTNNNNNAGG	1 cut(s)	2163
BstFNI	CGCG	3 cut(s)	256, 366, 792
BstH2I	RGCGCY	3 cut(s)	1812, 2106, 2502
BstHHI	GCGC	4 cut(s)	368, 1811, 2105, 2501
BstMAI	GTCTC	4 cut(s)	865, 1062, 2391, 3229
BstMCI	CGRYCG	1 cut(s)	3875
BstNI	CCWGG	5 cut(s)	138, 373, 1166, 2246, 3183
BstNSI	RCATGY	1 cut(s)	806
BstPAI	GACNNNNGTC	1 cut(s)	786
BstPI	GGTNACC	1 cut(s)	3659
BstSFI	CTRYAG	3 cut(s)	1954, 2523, 2689
BstSLI	GKGCMC	1 cut(s)	4396
BstUI	CGCG	3 cut(s)	256, 366, 792
BstV2I	GAAGAC	1 cut(s)	4224
BstX2I	RGATCY	6 cut(s)	491, 1244, 1461, 1633, 1797, 2547
BstXI	CCANNNNNNTGG	3 cut(s)	243, 4310, 4468
BstYI	RGATCY	6 cut(s)	491, 1244, 1461, 1633, 1797, 2547
Bsu15I	ATCGAT	2 cut(s)	2567, 3274
Bsu36I	CCTNAGG	1 cut(s)	2554
BsuI	GTATCC	1 cut(s)	1424
BsuTUI	ATCGAT	2 cut(s)	2567, 3274
BtgI	CCRYGG	5 cut(s)	281, 288, 751, 1064, 3774
BtgZI	GCGATG	3 cut(s)	2468, 2642, 3708
BtsI	GCAGTG	1 cut(s)	2408
BtsIMutI	CAGTG	4 cut(s)	1490, 2408, 2778, 4394
BveI	ACCTGC	1 cut(s)	2669
CaiI	CAGNNNCTG	3 cut(s)	863, 2777, 4610
CciI	TCATGA	2 cut(s)	706, 2188
CfoI	GCGC	4 cut(s)	368, 1811, 2105, 2501
Cfr10I	RCCGGY	4 cut(s)	5, 1325, 3752, 3870
ClaI	ATCGAT	2 cut(s)	2567, 3274
CseI	GACGC	4 cut(s)	372, 671, 1822, 4229
CspAI	ACCGGT	1 cut(s)	3870
DinI	GGCGCC	1 cut(s)	1810
DraI	TTTAAA	1 cut(s)	2005
EaeI	YGGCCR	4 cut(s)	3, 736, 865, 2242
Eam1104I	CTCTTC	5 cut(s)	921, 1065, 1258, 1545, 2078
EarI	CTCTTC	5 cut(s)	921, 1065, 1258, 1545, 2078
EciI	GGCGGA	3 cut(s)	319, 2317, 4011
Eco130I	CCWWGG	8 cut(s)	281, 440, 712, 751, 1064, 2164, 3070, 3774
Eco24I	GRGCYC	3 cut(s)	269, 281, 2253
Eco31I	GGTCTC	2 cut(s)	1062, 3229
Eco32I	GATATC	2 cut(s)	1150, 3808
Eco47I	GGWCC	5 cut(s)	150, 593, 1971, 4005, 4299
Eco57I	CTGAAG	4 cut(s)	1469, 2189, 4124, 4373
Eco81I	CCTNAGG	1 cut(s)	2554
Eco88I	CYCGRG	3 cut(s)	1986, 2448, 3226
Eco91I	GGTNACC	1 cut(s)	3659
EcoNI	CCTNNNNNAGG	1 cut(s)	2163
EcoO109I	RGGNCCY	3 cut(s)	150, 1971, 4299
EcoO65I	GGTNACC	1 cut(s)	3659
EcoRII	CCWGG	5 cut(s)	136, 371, 1164, 2244, 3181
EcoRV	GATATC	2 cut(s)	1150, 3808
EcoT14I	CCWWGG	8 cut(s)	281, 440, 712, 751, 1064, 2164, 3070, 3774
EcoT22I	ATGCAT	4 cut(s)	847, 1034, 1341, 2787
EcoT38I	GRGCYC	3 cut(s)	269, 281, 2253
EgeI	GGCGCC	1 cut(s)	1810
EheI	GGCGCC	1 cut(s)	1810
ErhI	CCWWGG	8 cut(s)	281, 440, 712, 751, 1064, 2164, 3070, 3774
FalI	AAGNNNNNCTT	4 cut(s)	4219, 4251, 4416, 4448
FaqI	GGGAC	7 cut(s)	136, 383, 822, 1849, 3313, 3330, 4312
FauI	CCCGC	6 cut(s)	63, 161, 785, 1900, 3985, 3995
FauNDI	CATATG	2 cut(s)	1412, 1424
FbaI	TGATCA	4 cut(s)	634, 838, 2457, 3408
FriOI	GRGCYC	3 cut(s)	269, 281, 2253
GlaI	GCGC	4 cut(s)	367, 1810, 2104, 2500
GsaI	CCCAGC	2 cut(s)	3118, 4306
GsuI	CTGGAG	4 cut(s)	28, 67, 1734, 1824
HaeII	RGCGCY	3 cut(s)	1812, 2106, 2502
HgaI	GACGC	4 cut(s)	372, 671, 1822, 4229
HhaI	GCGC	4 cut(s)	368, 1811, 2105, 2501
Hin1I	GRCGYC	2 cut(s)	1809, 1833
Hin6I	GCGC	4 cut(s)	366, 1809, 2103, 2499
HinP1I	GCGC	4 cut(s)	366, 1809, 2103, 2499
HindIII	AAGCTT	3 cut(s)	3685, 3863, 4233
Hpy166II	GTNNAC	5 cut(s)	524, 1096, 2124, 4394, 4585
Hpy8I	GTNNAC	5 cut(s)	524, 1096, 2124, 4394, 4585
Hpy99I	CGWCG	1 cut(s)	4021
HpyCH4IV	ACGT	2 cut(s)	758, 1088
HpySE526I	ACGT	2 cut(s)	758, 1088
Hsp92I	GRCGYC	2 cut(s)	1809, 1833
HspAI	GCGC	4 cut(s)	366, 1809, 2103, 2499
KasI	GGCGCC	1 cut(s)	1808
KflI	GGGWCCC	1 cut(s)	4299
Kpn2I	TCCGGA	1 cut(s)	1939
KroI	GCCGGC	1 cut(s)	1325
KroNI	GCCGGC	1 cut(s)	1327
Ksp22I	TGATCA	4 cut(s)	634, 838, 2457, 3408
LweI	GCATC	7 cut(s)	674, 937, 1019, 2029, 2190, 3430, 4543
MaeII	ACGT	2 cut(s)	758, 1088
MbiI	CCGCTC	1 cut(s)	327
MflI	RGATCY	6 cut(s)	491, 1244, 1461, 1633, 1797, 2547
MhlI	GDGCHC	6 cut(s)	269, 281, 618, 1042, 2253, 4396
MlsI	TGGCCA	2 cut(s)	738, 867
MluNI	TGGCCA	2 cut(s)	738, 867
Mly113I	GGCGCC	1 cut(s)	1809
MlyI	GAGTC	7 cut(s)	8, 169, 1126, 2071, 2621, 3188, 3376
MmeI	TCCRAC	7 cut(s)	132, 1156, 1180, 1205, 1420, 2374, 3721
Mox20I	TGGCCA	2 cut(s)	738, 867
Mph1103I	ATGCAT	4 cut(s)	847, 1034, 1341, 2787
MreI	CGCCGGCG	1 cut(s)	1325
MroI	TCCGGA	1 cut(s)	1939
MroNI	GCCGGC	1 cut(s)	1325
MscI	TGGCCA	2 cut(s)	738, 867
MslI	CAYNNNNRTG	3 cut(s)	831, 3773, 4466
Msp20I	TGGCCA	2 cut(s)	738, 867
MspA1I	CMGCKG	3 cut(s)	1907, 2711, 3365
MspCI	CTTAAG	1 cut(s)	4433
Mva1269I	GAATGC	1 cut(s)	2308
MvaI	CCWGG	5 cut(s)	138, 373, 1166, 2246, 3183
MvnI	CGCG	3 cut(s)	256, 366, 792
NaeI	GCCGGC	1 cut(s)	1327
NarI	GGCGCC	1 cut(s)	1809
NciI	CCSGG	5 cut(s)	98, 241, 650, 1913, 4009
NcoI	CCATGG	4 cut(s)	281, 751, 1064, 3774
NdeI	CATATG	2 cut(s)	1412, 1424
NgoMIV	GCCGGC	1 cut(s)	1325
NheI	GCTAGC	2 cut(s)	2105, 4589
NmeAIII	GCCGAG	3 cut(s)	1609, 2004, 2958
NmuCI	GTSAC	9 cut(s)	47, 690, 746, 798, 3496, 3579, 3904, 3934, 3947
NsiI	ATGCAT	4 cut(s)	847, 1034, 1341, 2787
NspI	RCATGY	1 cut(s)	806
NspV	TTCGAA	4 cut(s)	30, 2081, 3209, 3537
PaeR7I	CTCGAG	3 cut(s)	1986, 2448, 3226
PagI	TCATGA	2 cut(s)	706, 2188
PaqCI	CACCTGC	1 cut(s)	2669
PciI	ACATGT	1 cut(s)	802
PcsI	WCGNNNNNNNCGW	3 cut(s)	170, 624, 1326
PctI	GAATGC	1 cut(s)	2308
PdiI	GCCGGC	1 cut(s)	1327
PfeI	GAWTC	7 cut(s)	1112, 2047, 2436, 2472, 2513, 3242, 4406
PflMI	CCANNNNNTGG	1 cut(s)	2668
PfoI	TCCNGGA	1 cut(s)	4007
PinAI	ACCGGT	1 cut(s)	3870
PleI	GAGTC	7 cut(s)	8, 169, 1126, 2070, 2621, 3188, 3376
PluTI	GGCGCC	1 cut(s)	1812
PpsI	GAGTC	7 cut(s)	8, 169, 1126, 2070, 2621, 3188, 3376
PpuMI	RGGWCCY	3 cut(s)	150, 1971, 4299
PscI	ACATGT	1 cut(s)	802
PshAI	GACNNNNGTC	1 cut(s)	786
PshBI	ATTAAT	4 cut(s)	468, 1047, 3339, 3827
Psp1406I	AACGTT	1 cut(s)	1088
Psp5II	RGGWCCY	3 cut(s)	150, 1971, 4299
Psp6I	CCWGG	5 cut(s)	136, 371, 1164, 2244, 3181
PspEI	GGTNACC	1 cut(s)	3659
PspFI	CCCAGC	2 cut(s)	3114, 4302
PspGI	CCWGG	5 cut(s)	136, 371, 1164, 2244, 3181
PspPPI	RGGWCCY	3 cut(s)	150, 1971, 4299
PspXI	VCTCGAGB	2 cut(s)	1986, 2448
PstI	CTGCAG	1 cut(s)	2527
PstNI	CAGNNNCTG	3 cut(s)	863, 2777, 4610
PsuI	RGATCY	6 cut(s)	491, 1244, 1461, 1633, 1797, 2547
PvuII	CAGCTG	1 cut(s)	3365
RseI	CAYNNNNRTG	3 cut(s)	831, 3773, 4466
ScaI	AGTACT	1 cut(s)	1984
SchI	GAGTC	7 cut(s)	8, 169, 1126, 2071, 2621, 3188, 3376
SduI	GDGCHC	6 cut(s)	269, 281, 618, 1042, 2253, 4396
SfaNI	GCATC	7 cut(s)	674, 937, 1019, 2029, 2190, 3430, 4543
SfcI	CTRYAG	3 cut(s)	1954, 2523, 2689
SfoI	GGCGCC	1 cut(s)	1810
Sfr274I	CTCGAG	3 cut(s)	1986, 2448, 3226
SfuI	TTCGAA	4 cut(s)	30, 2081, 3209, 3537
SgrAI	CRCCGGYG	1 cut(s)	1325
SinI	GGWCC	5 cut(s)	150, 593, 1971, 4005, 4299
SlaI	CTCGAG	3 cut(s)	1986, 2448, 3226
SmiMI	CAYNNNNRTG	3 cut(s)	831, 3773, 4466
SspDI	GGCGCC	1 cut(s)	1808
SspI	AATATT	1 cut(s)	4177
StyI	CCWWGG	8 cut(s)	281, 440, 712, 751, 1064, 2164, 3070, 3774
TaiI	ACGT	2 cut(s)	761, 1091
TaqII	GACCGA	1 cut(s)	608
TatI	WGTACW	2 cut(s)	1415, 1982
TauI	GCSGC	6 cut(s)	188, 327, 882, 1325, 1814, 2711
TfiI	GAWTC	7 cut(s)	1112, 2047, 2436, 2472, 2513, 3242, 4406
TscAI	CASTG	4 cut(s)	1497, 2415, 2778, 4401
TseFI	GTSAC	9 cut(s)	47, 690, 746, 798, 3496, 3579, 3904, 3934, 3947
Tsp45I	GTSAC	9 cut(s)	47, 690, 746, 798, 3496, 3579, 3904, 3934, 3947
TspRI	CASTG	4 cut(s)	1497, 2415, 2778, 4401
Van91I	CCANNNNNTGG	1 cut(s)	2668
Vha464I	CTTAAG	1 cut(s)	4433
VneI	GTGCAC	1 cut(s)	4392
VpaK11BI	GGWCC	5 cut(s)	150, 593, 1971, 4005, 4299
VspI	ATTAAT	4 cut(s)	468, 1047, 3339, 3827
XagI	CCTNNNNNAGG	1 cut(s)	2163
XapI	RAATTY	7 cut(s)	259, 1344, 2000, 2602, 3205, 3415, 3705
XbaI	TCTAGA	1 cut(s)	4375
XceI	RCATGY	1 cut(s)	806
XhoI	CTCGAG	3 cut(s)	1986, 2448, 3226
XmaJI	CCTAGG	1 cut(s)	440
ZrmI	AGTACT	1 cut(s)	1984
Zsp2I	ATGCAT	4 cut(s)	847, 1034, 1341, 2787

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.