Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr17

Orthogroup ID

OG0017342

Physical Location & Seq

Genomic Coordinates Reverse (-)

13618531 .. 13624825

Gene Structure 6295 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD17G1149200.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 4620 bp

ATGGACGGCATAGACACCTTCGAATTCGAAAAATCCTCCTCTAGCCCCCTGCCACGCCACCCCACGCCCGTCAGCTCTCGCTATGGCTCCCGCTCCCTCACCCCGATCAGCACCAACTCCCGGTCCACCCAAAACCGAACCCCCGGCAGCCGGAGGTCCCGCCACACCACGCCCCCCACAACCCCATTTGCAGCTGACAATGACGTGTCATGGCAAGGGGAGATTTCGTGGCAGTTTGAGCCCAGAGGGTGGAGCGACACTCGCAATTTGGGTTCAGCTTTGAGCCCGTGGGCCACGACCAGCACAACCTCCGAAGCCCACATAGTTCACCGCTCTGCCAATTACTACTACCTCTCAAGAACCAGTAGAAGCGCTGCCATTAATAACCCAAATTACAATTCTGTCCTTGATGGCAGGCTTGAGCTTCAAAGCTATGTTGCTTCTCCAAGGGATAATAATGGGAATAGCAACATTAATTTGAGTAATAGTAGTGAGAGTTCTTTAGTTTTTGTAAAGAGTAGCTATGGTACACAAAATAATAAGTCCCCAAGATTGGAAAAAATAAAGGAGTTGGGAAGTGGAAATTACAGTGGAAGTGGTCCATTGGCTAGAACAGATGTGCTCAGTCTGATCAACTATGATCAAACACCATACCGGAATGAAGATGACCCATCCGAAGTTTCGGGTCATGGGATGTCAAATAATTTTGGTCAAGACCCCGATGGTCATTTTTACAATCATGGCCATCGTGGTACAGCGAAAATTATAGGACATGATGACCATGGTCACGAGTTGTCACATGTGGGACATGATCATCATCGTCACAGTTATGATGATCATGCCAGGCAATCAACAGTCTTTAGCCGCCATTACGGCAGCGTTGATGGGTATGCCGATAGTGATCAATGTTCGGGTTACGATGAGGAAGAGGAGGATGAAGAAGATGAGGTGCCACCAAAGCAAGTAGGGTTGCTTAGCTTGTTCAAGTATTCAACAAAGTGGGATATGGTTCTTGTGTTTTTGGGATGCATTGGTGCTCTTATTAATGGAGGGTCTCTTCCTTGGTACTCTTATCTTTTTGGACAGTTTGTGAACAAGATTGCTATTGAATCAACGTACGCTGACAAGAATCAGATGATGAATGATATCGAAACGATATGCCTGTATATGGCTGGACTAGCATCAATAGTTGTAGTTGGAGCATACATGGAGATTACTTGCTGGAGAATGGTGGGGGAGAGATCTGCTCAAAGAATAAGAAGAGAATATCTAAGAGCAGTTCTACGGCAGGACATTAGCTTTTTCGATACAGAAATCACAGCGGGGGACATTATGCATGGAATTTCTAGTGATGTTGCTCAAATCCAAGAAGTTATGGGGGAGAAGATGGCGCATTTCATTCACCACATATGTACCTTCATATGTGGATACACAGTTGGATTTCTGAGGTCATGGAAGATCTCTCTAGTAGTCTTTTCAGTCATACCGTTGATGATGTTCTGTAGTATCGCTTACAAGGCAGTTTATGTTGGCCTCACAACGAAAGAAGAGGTTTCTTACCGGAAAACTGGTAGTGTAGCTGAGCAAGCAATCAGCTCAATCAGAACTGTGTTTTCCTTTGTTGCGGAGGATCACCTAGCTGAAAAATACGCGGATTTATTGAACAAGTTGGTGCCTTTTGGAGCAACGATCGGCTTCGCTAAGGGTGCTGGAGTGGGAGTTATCTATCTGGTTTCGTATTCAACATGGGCGTTGGCTTTCTGGTATGGTGCTGTTTTGGTTGCTAAGGGAGAGATCACTGGAGGCGCCGCCATTGCTTGTTTCTTTGGTGTCAATGTTGGGGGAAGGGCCTTGGCGTTGTCTCTTTCATACTTTGCTCAGTTTGCACAAGGCACAGTAGCAGCAGGCCGGGTGTTTGAAATTATAGATAGAGTTCCAGAGATAGACCCCTACAGCTCAGTAGGCAGGACCCTGCCGAGTGCTCGAGGAAGGATTGAATTTAAAGACGTTTCTTTTTCATACCCGTCCCGTTTGAATGCTCCGATTCTTTATTCCCTTAATCTGGTTATCCCATCTTCAAAGACACTAGCACTCGTTGGCGCTAGCGGAGGTGGAAAGTCCACCATTTTCGCTCTTATAGAGAGGTTCTATGACCCTAACCAAGGTACAATCACATTGGACGGTTATGATTTAAGGACGCTGCAGGTGAAGTGGCTGAGAGATCAGATAGGTATGGTCGGCCAGGAGCCGGTGCTCTTTGCCACAAGCATACTAGAAAATGTGTTAATGGGGAAGGAGAATGCCACCAAGAAGGAAGCAATTTCTGCCTGCATTGCTGCTAATGCCAACAGCTTCATTTCTGACCTTCCACAAGGCTATGACACTCAGGTTGGAGACAAAGGAACACTGCTGTCAGGAGGTCAAAAGCAAAGAATCGCATTGGCTCGAGCGATGATCAAAGACCCTAGAATCCTTCTCTTGGATGAACCTACCAGTGCCTTAGACCCTGAATCCGAGGCTGCAGTCCAAAAGGCTATTGACAAGATCTCCTTTGGCCGAACAGCGATTGTAATTGCTCACAGGCTATCAACAGTAAGAAATTCTCACACCATAGTTGTTCTTGACTCTGGCTCTGTCGTTGAGATTGGTAATCACCGCCAGCTCATGGAAAAAGCCGGTGCCTACTATAGCCTTGTTGAGCTTGCTGCTGATGGAGTAACAAAACCTTTGTTGAAACAAAATGAAACTCAGAAAGTCACTCAGTTTTCAGCGGTGGATATGCATGATTTGTCAAGATCGCAATTCACTCAAGAGAAAAATCAAGTAGAGGAGAAAGATGTCCAGAACCTAAAACCAAAAAAGGTTCAACTTTCGGATATATGGTTGTTGCAAAGACCAGAGGTGCCAACGCTCTTAGTAGGGTTTCTTTTTGGTATGAATGTAGGTGCAATTTTGTCTCTCTTTCCTTTCGTTCTAGGTCTAGCCCTCGAAATATATTTCTATAAAGACCCATCGAAAATCAAGAAAAAAGTTGAGCCTCTTTGTTTAGCACTTGTTGGGCTTGGCATTGGGAACATACTCTTCATGACAGGACAACAAGGCTTGTGTGGCTGGGCGGGAACAAAACTTACAATGAGAGTGCGAAACCTCCTGTTTCGTTCGATATTAAAACAAGAGCCTGGGTGGTTTGACTCCGAAAAAAATTCGAAAGCAGTTCTGGTCTCGATGCTCTCGATTGATTCTGTCAGTTTTCGTTCGGTCCATGTCGATCGATTATCAGTACTGTTGATGGGCTTGAGTTCAGGTATCGTGGGACTTTGTTTGTGCTTTTGGCTTGATAAGTGGCTAACTCTTCTGGCTGCTGCTCTCGCTCCTTTGACCCTTGGTGCAAGTTACTTCAGCTTGATCATAAATTTAGGGCCAAAACTCGACAACGATGCTTATGCTAAAGCGAGCAACATTGCTGCCGGTGCAGTTTCAAACATAAGGACAGTCACAACATTTTCTGCTCAGCAACAGTTGGTTAATTCCTTTGAAAGAGCTTTATTGGGGCCGAAGAGGAAATCGGTTAAAAGGTCACAAATCATGGGCCTAACACTAGGCTTTTCGGAAGGTGCTTTGTATGGAGCATACACCTTGACTCTTTGGTTTGGTGGTTACCTTGTGAAAGAAGGCAAAGCAAGCTTCGGCAATGTGTACAAAATTTTTCTCATCCTTGTTTTGAGTTCGTTTTCTGTTGGACAATTAGCCGGTCTTGCACCAGACACATCCATGGCTGCAACAGCAATTCCAGCAGTTTTCGATATCATTACTCGCAAGCCATTAATCAGCAGCAGCAGAGAAAAAGAAATGAAGCTTGACCGGTCGAAACCATTGGACATTCAGTTCAAAATGGTGACATTTGCATACCCTTCTAGGCCAGATGTGAACGTGTTGAGTAACTTTTGCTTGAAGGTCAAAGGCGGTAGCACAGTGGCACTGGTGGGTGGAAGCGGATCCGGGAAATCTACGGTGATATGGTTAATACAGAGGTTTTATGATCCAATTCAAGGGAAGGTGATGATGGGAGGGGTGGATTTGAGGGAGATAAATCTGAAATGGCTGAGAGGGCAAATAGCTCTAGTGGGTCAAGAGCTTACATTGTTTGCAGGCACTATAAGAGAAAATATTGCTTTTGGAAACCCTAGTGCTTCACGGGGTGAAATTGAAGAAGCTGCAAGGGAAGCTTATATTCACGAGTTCATTAGTAGCCTCCCTCAAGGCTATGAAACTCAGGTTGGTGAGAGTGGAGCCCAGATATCCGGGGGGCAGAAGCAAAGGATTGCCATAGCAAGGGCAATACTGAAGAAATCAAAGGTACTGCTTCTAGACGAAGCAAGTAGTGCACTGGATTTGGAATCGGAGAGACACATACAATATGCACTTAGGAAGATCAGCAAACGGGCTACAACCATCATAGTGGCTCACCGGCTTTTGACGATCCGAGAGGCTGATATGATAGCGGTTATGAGCAACGGTGCCATCACCGAATATGGGAGCCATGAGACACTTATGGCCTCTCACCTTAATGGTGTGTATGCTAGTTTGGTGCGTGCAGAAACTGAAGTCAATGCATTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0005215 GO:0005575 GO:0005623 GO:0005886 GO:0006810 GO:0007275 GO:0008150 GO:0008361 GO:0009314 GO:0009411 GO:0009416 GO:0009605 GO:0009606 GO:0009628 GO:0009629 GO:0009630 GO:0009637 GO:0009639 GO:0009640 GO:0009653 GO:0009719 GO:0009725 GO:0009733 GO:0009791 GO:0009908 GO:0009914 GO:0009926 GO:0009958 GO:0009966 GO:0009987 GO:0010033 GO:0010218 GO:0010315 GO:0010329 GO:0010540 GO:0010541 GO:0010646 GO:0010817 GO:0010928 GO:0015562 GO:0016020 GO:0016043 GO:0022414 GO:0022622 GO:0022857 GO:0023051 GO:0032501 GO:0032502 GO:0032535 GO:0042221 GO:0043473 GO:0043476 GO:0043478 GO:0043479 GO:0043480 GO:0043481 GO:0044464 GO:0048364 GO:0048367 GO:0048437 GO:0048438 GO:0048443 GO:0048466 GO:0048527 GO:0048528 GO:0048583 GO:0048608 GO:0048646 GO:0048731 GO:0048827 GO:0048856 GO:0048859 GO:0050789 GO:0050794 GO:0050896 GO:0051179 GO:0051234 GO:0055085 GO:0060918 GO:0061458 GO:0065007 GO:0065008 GO:0071840 GO:0071944 GO:0080161 GO:0090066 GO:0090567 GO:0090691 GO:0090696 GO:0099402

KEGG Pathways

Metabolic & Signaling

ko02010 ko04976 ko05206 ko05226 map02010 map04976 map05206 map05226

Pfam Domains

Protein Families

ABC_membrane ABC_tran

Protein Analysis

1540

Amino Acids

168.72

Weight (kDa)

8.12

Isoelectric Point (pI)

38.27

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ABC_membrane	PF00664	339 - 612	1.7e-56	ABC transporter transmembrane region
ABC_tran	PF00005	685 - 832	8.6e-31	ABC transporter
ABC_membrane	PF00664	971 - 1242	3.9e-44	ABC transporter transmembrane region
ABC_tran	PF00005	1313 - 1460	9.6e-30	ABC transporter

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0017342)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g35260
malus_domestica	MD09G1177100.v1.1 MD17G1149200.v1.1
prunus_persica	Prupe.3G036400_v2.0.a1
rosa_chinensis	RchiOBHm_Chr2g0146621
rosa_laevigata	RLG00000020211
rosa_multiflora	Rmu_sc0001986.1_g000032
rosa_roxburghii	Rroxscaffold_2G00100000
rosa_rugosa	Rorug02G0395800 Rorug02G0395800
rosa_samantha	Rh2BG464800 Rh2DG473800
rosa_wichuraiana	Rw2G036930

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	2194
Acc36I	ACCTGC	1 cut(s)	2194
AccB1I	GGYRCC	6 cut(s)	949, 1672, 1805, 2678, 2902, 4517
AccB7I	CCANNNNNTGG	2 cut(s)	249, 2665
AccBSI	CCGCTC	2 cut(s)	93, 333
AccII	CGCG	1 cut(s)	1652
AclWI	GGATC	5 cut(s)	1638, 3990, 4003, 4034, 4474
AcoI	YGGCCR	3 cut(s)	742, 2239, 2554
AcsI	RAATTY	7 cut(s)	23, 1341, 1997, 2599, 3202, 3412, 3702
AcuI	CTGAAG	2 cut(s)	3382, 4364
AcyI	GRCGYC	1 cut(s)	1806
AdeI	CACNNNGTG	1 cut(s)	4199
AfaI	GTAC	9 cut(s)	529, 754, 1067, 1118, 1414, 2167, 3282, 3698, 4359
AfeI	AGCGCT	1 cut(s)	373
AflIII	ACRYGT	3 cut(s)	204, 799, 3930
AgeI	ACCGGT	1 cut(s)	3861
AjiI	CACGTC	1 cut(s)	205
AjnI	CCWGG	3 cut(s)	842, 2241, 3178
AjuI	GAANNNNNNNTTGG	4 cut(s)	382, 414, 4260, 4292
AloI	GAACNNNNNNTCC	2 cut(s)	3869, 3901
Alw21I	GWGCWC	5 cut(s)	624, 1039, 1984, 2256, 4387
Alw26I	GTCTC	7 cut(s)	1059, 1866, 2388, 2961, 3226, 4399, 4538
Alw44I	GTGCAC	1 cut(s)	4383
AlwI	GGATC	5 cut(s)	1638, 3990, 4003, 4034, 4474
AlwNI	CAGNNNCTG	1 cut(s)	4601
Ama87I	CYCGRG	2 cut(s)	1983, 2445
Aor51HI	AGCGCT	1 cut(s)	373
ApaLI	GTGCAC	1 cut(s)	4383
ApoI	RAATTY	7 cut(s)	23, 1341, 1997, 2599, 3202, 3412, 3702
AseI	ATTAAT	4 cut(s)	381, 474, 1044, 3824
AsiGI	ACCGGT	1 cut(s)	3861
AspLEI	GCGC	4 cut(s)	374, 1393, 1808, 2102
AsuC2I	CCSGG	5 cut(s)	121, 144, 1910, 4000, 4303
AsuII	TTCGAA	3 cut(s)	21, 27, 3206
AsuNHI	GCTAGC	1 cut(s)	2102
AvaI	CYCGRG	2 cut(s)	1983, 2445
AvaII	GGWCC	5 cut(s)	123, 156, 599, 1968, 3259
BaeGI	GKGCMC	1 cut(s)	4387
BaeI	ACNNNNGTAYC	2 cut(s)	1396, 1429
BalI	TGGCCA	1 cut(s)	744
BamHI	GGATCC	1 cut(s)	3995
BanI	GGYRCC	6 cut(s)	949, 1672, 1805, 2678, 2902, 4517
BanII	GRGCYC	3 cut(s)	243, 287, 4294
BauI	CACGAG	2 cut(s)	788, 4235
Bbv12I	GWGCWC	5 cut(s)	624, 1039, 1984, 2256, 4387
BceAI	ACGGC	3 cut(s)	22, 889, 1301
BcgI	CGANNNNNNTGC	4 cut(s)	3419, 3425, 3453, 3459
BciT130I	CCWGG	3 cut(s)	844, 2243, 3180
BciVI	GTATCC	1 cut(s)	1421
BclI	TGATCA	7 cut(s)	630, 640, 811, 835, 901, 2454, 3405
BcnI	CCSGG	5 cut(s)	121, 144, 1910, 4000, 4303
BcoDI	GTCTC	7 cut(s)	1059, 1866, 2388, 2961, 3226, 4399, 4538
BfmI	CTRYAG	5 cut(s)	1501, 1951, 2201, 2520, 2686
BfoI	RGCGCY	3 cut(s)	375, 1809, 2103
BfuAI	ACCTGC	1 cut(s)	2194
BfuI	GTATCC	1 cut(s)	1421
BglI	GCCNNNNNGGC	1 cut(s)	873
BglII	AGATCT	3 cut(s)	1241, 1458, 2544
BlpI	GCTNAGC	3 cut(s)	974, 1581, 3510
BmcAI	AGTACT	1 cut(s)	3282
Bme1390I	CCNGG	8 cut(s)	121, 144, 844, 1910, 2243, 3180, 4000, 4303
Bme18I	GGWCC	5 cut(s)	123, 156, 599, 1968, 3259
BmeT110I	CYCGRG	2 cut(s)	1983, 2445
BmgBI	CACGTC	1 cut(s)	205
BmrFI	CCNGG	8 cut(s)	121, 144, 844, 1910, 2243, 3180, 4000, 4303
BmsI	GCATC	4 cut(s)	1016, 1190, 3216, 3427
BmtI	GCTAGC	1 cut(s)	2106
BoxI	GACNNNNGTC	1 cut(s)	783
BplI	GAGNNNNNCTC	4 cut(s)	244, 276, 1231, 1263
BpmI	CTGGAG	3 cut(s)	1243, 1731, 1821
Bpu10I	CCTNAGC	2 cut(s)	1701, 1785
Bpu1102I	GCTNAGC	3 cut(s)	974, 1581, 3510
Bpu14I	TTCGAA	3 cut(s)	21, 27, 3206
BpuEI	CTTGAG	5 cut(s)	340, 440, 2793, 3316, 4242
BpuMI	CCSGG	5 cut(s)	121, 144, 1910, 4000, 4303
Bsa29I	ATCGAT	1 cut(s)	3271
BsaBI	GATNNNNATC	2 cut(s)	816, 900
BsaHI	GRCGYC	1 cut(s)	1806
BsaI	GGTCTC	2 cut(s)	1059, 3226
BsaWI	WCCGGW	3 cut(s)	654, 1560, 3861
BsaXI	ACNNNNNCTCC	6 cut(s)	212, 242, 1704, 1734, 2531, 2561
Bse118I	RCCGGY	6 cut(s)	2248, 2675, 3467, 3749, 3861, 4467
Bse1I	ACTGG	6 cut(s)	363, 1573, 1804, 2493, 3984, 4392
Bse3DI	GCAATG	4 cut(s)	1812, 2331, 3459, 3697
Bse8I	GATNNNNATC	2 cut(s)	816, 900
BseBI	CCWGG	3 cut(s)	844, 2243, 3180
BseCI	ATCGAT	1 cut(s)	3271
BseGI	GGATG	7 cut(s)	671, 699, 940, 1031, 2488, 3711, 3767
BseJI	GATNNNNATC	2 cut(s)	816, 900
BseMI	GCAATG	4 cut(s)	1812, 2331, 3459, 3697
BseNI	ACTGG	6 cut(s)	363, 1573, 1804, 2493, 3984, 4392
BseRI	GAGGAG	3 cut(s)	28, 944, 2843
BseSI	GKGCMC	1 cut(s)	4387
BseYI	CCCAGC	1 cut(s)	3111
BsgI	GTGCAG	2 cut(s)	3492, 4614
Bsh1236I	CGCG	1 cut(s)	1652
Bsh1285I	CGRYCG	3 cut(s)	1692, 3271, 3866
BshNI	GGYRCC	6 cut(s)	949, 1672, 1805, 2678, 2902, 4517
BshTI	ACCGGT	1 cut(s)	3861
BshVI	ATCGAT	1 cut(s)	3271
BsiEI	CGRYCG	3 cut(s)	1692, 3271, 3866
BsiHKAI	GWGCWC	5 cut(s)	624, 1039, 1984, 2256, 4387
BsiHKCI	CYCGRG	2 cut(s)	1983, 2445
BsiWI	CGTACG	1 cut(s)	1116
BslFI	GGGAC	6 cut(s)	142, 529, 819, 1340, 2011, 3327
BsmAI	GTCTC	7 cut(s)	1059, 1866, 2388, 2961, 3226, 4399, 4538
BsmFI	GGGAC	6 cut(s)	142, 529, 819, 1340, 2011, 3327
BsmI	GAATGC	2 cut(s)	2041, 2305
Bso31I	GGTCTC	2 cut(s)	1059, 3226
BsoBI	CYCGRG	2 cut(s)	1983, 2445
Bsp119I	TTCGAA	3 cut(s)	21, 27, 3206
Bsp1286I	GDGCHC	8 cut(s)	243, 287, 624, 1039, 1984, 2256, 4294, 4387
Bsp1407I	TGTACA	1 cut(s)	3696
Bsp1720I	GCTNAGC	3 cut(s)	974, 1581, 3510
Bsp19I	CCATGG	2 cut(s)	781, 3771
BspDI	ATCGAT	1 cut(s)	3271
BspFNI	CGCG	1 cut(s)	1652
BspHI	TCATGA	1 cut(s)	3084
BspMAI	CTGCAG	2 cut(s)	2205, 2524
BspMI	ACCTGC	1 cut(s)	2194
BspOI	GCTAGC	1 cut(s)	2106
BspPI	GGATC	5 cut(s)	1638, 3990, 4003, 4034, 4474
BspT104I	TTCGAA	3 cut(s)	21, 27, 3206
BspT107I	GGYRCC	6 cut(s)	949, 1672, 1805, 2678, 2902, 4517
BspTNI	GGTCTC	2 cut(s)	1059, 3226
BsrBI	CCGCTC	2 cut(s)	93, 333
BsrDI	GCAATG	4 cut(s)	1812, 2331, 3459, 3697
BsrFI	RCCGGY	6 cut(s)	2248, 2675, 3467, 3749, 3861, 4467
BsrGI	TGTACA	1 cut(s)	3696
BsrI	ACTGG	6 cut(s)	363, 1573, 1804, 2493, 3984, 4392
BssAI	RCCGGY	6 cut(s)	2248, 2675, 3467, 3749, 3861, 4467
BssNI	GRCGYC	1 cut(s)	1806
BssSI	CACGAG	2 cut(s)	788, 4235
BssT1I	CCWWGG	7 cut(s)	446, 781, 1061, 1851, 2161, 3382, 3771
Bst2BI	CACGAG	2 cut(s)	788, 4235
Bst2UI	CCWGG	3 cut(s)	844, 2243, 3180
Bst6I	CTCTTC	7 cut(s)	921, 1062, 1255, 1542, 3086, 3357, 3551
BstACI	GRCGYC	1 cut(s)	1806
BstAPI	GCANNNNNTGC	2 cut(s)	2324, 4382
BstAUI	TGTACA	1 cut(s)	3696
BstBI	TTCGAA	3 cut(s)	21, 27, 3206
BstDSI	CCRYGG	3 cut(s)	287, 781, 3771
BstEII	GGTNACC	1 cut(s)	3656
BstENI	CCTNNNNNAGG	1 cut(s)	2160
BstF5I	GGATG	7 cut(s)	671, 699, 940, 1031, 2488, 3711, 3767
BstFNI	CGCG	1 cut(s)	1652
BstH2I	RGCGCY	3 cut(s)	375, 1809, 2103
BstHHI	GCGC	4 cut(s)	374, 1393, 1808, 2102
BstMAI	GTCTC	7 cut(s)	1059, 1866, 2388, 2961, 3226, 4399, 4538
BstMCI	CGRYCG	3 cut(s)	1692, 3271, 3866
BstNI	CCWGG	3 cut(s)	844, 2243, 3180
BstNSI	RCATGY	1 cut(s)	803
BstPAI	GACNNNNGTC	1 cut(s)	783
BstPI	GGTNACC	1 cut(s)	3656
BstSCI	CCNGG	8 cut(s)	119, 142, 842, 1908, 2241, 3178, 3998, 4301
BstSFI	CTRYAG	5 cut(s)	1501, 1951, 2201, 2520, 2686
BstSLI	GKGCMC	1 cut(s)	4387
BstUI	CGCG	1 cut(s)	1652
BstX2I	RGATCY	4 cut(s)	1241, 1458, 2544, 3995
BstXI	CCANNNNNNTGG	1 cut(s)	4459
BstYI	RGATCY	4 cut(s)	1241, 1458, 2544, 3995
Bsu15I	ATCGAT	1 cut(s)	3271
BsuI	GTATCC	1 cut(s)	1421
BsuTUI	ATCGAT	1 cut(s)	3271
BtgI	CCRYGG	3 cut(s)	287, 781, 3771
BtgZI	GCGATG	1 cut(s)	2465
BtrI	CACGTC	1 cut(s)	205
BtsCI	GGATG	7 cut(s)	671, 699, 940, 1031, 2488, 3711, 3767
BtsI	GCAGTG	1 cut(s)	2405
BtsIMutI	CAGTG	7 cut(s)	595, 1797, 2405, 2500, 3977, 3978, 4385
BveI	ACCTGC	1 cut(s)	2194
CaiI	CAGNNNCTG	1 cut(s)	4601
CciI	TCATGA	1 cut(s)	3084
CfoI	GCGC	4 cut(s)	374, 1393, 1808, 2102
Cfr10I	RCCGGY	6 cut(s)	2248, 2675, 3467, 3749, 3861, 4467
ClaI	ATCGAT	1 cut(s)	3271
CseI	GACGC	1 cut(s)	2206
Csp6I	GTAC	9 cut(s)	528, 753, 1066, 1117, 1413, 2166, 3281, 3697, 4358
CspAI	ACCGGT	1 cut(s)	3861
CviQI	GTAC	9 cut(s)	528, 753, 1066, 1117, 1413, 2166, 3281, 3697, 4358
DinI	GGCGCC	1 cut(s)	1807
DraI	TTTAAA	1 cut(s)	2002
DraIII	CACNNNGTG	1 cut(s)	4199
EaeI	YGGCCR	3 cut(s)	742, 2239, 2554
Eam1104I	CTCTTC	7 cut(s)	921, 1062, 1255, 1542, 3086, 3357, 3551
EarI	CTCTTC	7 cut(s)	921, 1062, 1255, 1542, 3086, 3357, 3551
Eco130I	CCWWGG	7 cut(s)	446, 781, 1061, 1851, 2161, 3382, 3771
Eco24I	GRGCYC	3 cut(s)	243, 287, 4294
Eco31I	GGTCTC	2 cut(s)	1059, 3226
Eco32I	GATATC	3 cut(s)	1147, 3805, 4299
Eco47I	GGWCC	5 cut(s)	123, 156, 599, 1968, 3259
Eco47III	AGCGCT	1 cut(s)	373
Eco57I	CTGAAG	2 cut(s)	3382, 4364
Eco88I	CYCGRG	2 cut(s)	1983, 2445
Eco91I	GGTNACC	1 cut(s)	3656
EcoNI	CCTNNNNNAGG	1 cut(s)	2160
EcoO109I	RGGNCCY	3 cut(s)	156, 1848, 1968
EcoO65I	GGTNACC	1 cut(s)	3656
EcoRI	GAATTC	1 cut(s)	23
EcoRII	CCWGG	3 cut(s)	842, 2241, 3178
EcoRV	GATATC	3 cut(s)	1147, 3805, 4299
EcoT14I	CCWWGG	7 cut(s)	446, 781, 1061, 1851, 2161, 3382, 3771
EcoT22I	ATGCAT	4 cut(s)	1031, 1338, 2784, 4615
EcoT38I	GRGCYC	3 cut(s)	243, 287, 4294
EgeI	GGCGCC	1 cut(s)	1807
EheI	GGCGCC	1 cut(s)	1807
ErhI	CCWWGG	7 cut(s)	446, 781, 1061, 1851, 2161, 3382, 3771
FalI	AAGNNNNNCTT	4 cut(s)	2534, 2566, 4210, 4242
FaqI	GGGAC	6 cut(s)	142, 529, 819, 1340, 2011, 3327
FauI	CCCGC	4 cut(s)	98, 167, 1315, 3109
FauNDI	CATATG	2 cut(s)	1409, 1421
FbaI	TGATCA	7 cut(s)	630, 640, 811, 835, 901, 2454, 3405
FokI	GGATG	7 cut(s)	658, 706, 947, 1038, 2495, 3698, 3754
FriOI	GRGCYC	3 cut(s)	243, 287, 4294
GlaI	GCGC	4 cut(s)	373, 1392, 1807, 2101
GsaI	CCCAGC	1 cut(s)	3115
GsuI	CTGGAG	3 cut(s)	1243, 1731, 1821
HaeII	RGCGCY	3 cut(s)	375, 1809, 2103
HgaI	GACGC	1 cut(s)	2206
HhaI	GCGC	4 cut(s)	374, 1393, 1808, 2102
Hin1I	GRCGYC	1 cut(s)	1806
Hin6I	GCGC	4 cut(s)	372, 1391, 1806, 2100
HinP1I	GCGC	4 cut(s)	372, 1391, 1806, 2100
HindIII	AAGCTT	3 cut(s)	3682, 3854, 4224
Hpy166II	GTNNAC	8 cut(s)	126, 328, 530, 1093, 2121, 3697, 3928, 4385
Hpy8I	GTNNAC	8 cut(s)	126, 328, 530, 1093, 2121, 3697, 3928, 4385
HpyCH4IV	ACGT	4 cut(s)	204, 1115, 2007, 3930
HpySE526I	ACGT	4 cut(s)	204, 1115, 2007, 3930
Hsp92I	GRCGYC	1 cut(s)	1806
HspAI	GCGC	4 cut(s)	372, 1391, 1806, 2100
KasI	GGCGCC	1 cut(s)	1805
Ksp22I	TGATCA	7 cut(s)	630, 640, 811, 835, 901, 2454, 3405
LweI	GCATC	4 cut(s)	1016, 1190, 3216, 3427
MaeII	ACGT	4 cut(s)	204, 1115, 2007, 3930
MbiI	CCGCTC	2 cut(s)	93, 333
MflI	RGATCY	4 cut(s)	1241, 1458, 2544, 3995
MhlI	GDGCHC	8 cut(s)	243, 287, 624, 1039, 1984, 2256, 4294, 4387
MlsI	TGGCCA	1 cut(s)	744
MluNI	TGGCCA	1 cut(s)	744
Mly113I	GGCGCC	1 cut(s)	1806
MlyI	GAGTC	3 cut(s)	2618, 3185, 3634
MmeI	TCCRAC	4 cut(s)	1177, 1417, 2371, 3718
Mox20I	TGGCCA	1 cut(s)	744
Mph1103I	ATGCAT	4 cut(s)	1031, 1338, 2784, 4615
MscI	TGGCCA	1 cut(s)	744
MslI	CAYNNNNRTG	4 cut(s)	828, 3770, 4457, 4566
Msp20I	TGGCCA	1 cut(s)	744
MspA1I	CMGCKG	3 cut(s)	194, 1322, 2771
MspR9I	CCNGG	8 cut(s)	121, 144, 844, 1910, 2243, 3180, 4000, 4303
Mva1269I	GAATGC	2 cut(s)	2041, 2305
MvaI	CCWGG	3 cut(s)	844, 2243, 3180
MvnI	CGCG	1 cut(s)	1652
NarI	GGCGCC	1 cut(s)	1806
NciI	CCSGG	5 cut(s)	121, 144, 1910, 4000, 4303
NcoI	CCATGG	2 cut(s)	781, 3771
NdeI	CATATG	2 cut(s)	1409, 1421
NheI	GCTAGC	1 cut(s)	2102
NmeAIII	GCCGAG	1 cut(s)	2001
NmuCI	GTSAC	7 cut(s)	785, 795, 821, 2755, 3493, 3576, 3895
NsiI	ATGCAT	4 cut(s)	1031, 1338, 2784, 4615
NspI	RCATGY	1 cut(s)	803
NspV	TTCGAA	3 cut(s)	21, 27, 3206
PaeR7I	CTCGAG	2 cut(s)	1983, 2445
PagI	TCATGA	1 cut(s)	3084
PaqCI	CACCTGC	1 cut(s)	2194
PciI	ACATGT	1 cut(s)	799
PcsI	WCGNNNNNNNCGW	1 cut(s)	3230
PctI	GAATGC	2 cut(s)	2041, 2305
PfeI	GAWTC	8 cut(s)	1109, 1129, 2044, 2433, 2469, 2510, 3239, 4397
Pfl23II	CGTACG	1 cut(s)	1116
PflMI	CCANNNNNTGG	2 cut(s)	249, 2665
PfoI	TCCNGGA	1 cut(s)	3998
PinAI	ACCGGT	1 cut(s)	3861
Ple19I	CGATCG	2 cut(s)	1692, 3271
PleI	GAGTC	3 cut(s)	2618, 3185, 3634
PluTI	GGCGCC	1 cut(s)	1809
PpsI	GAGTC	3 cut(s)	2618, 3185, 3634
PpuMI	RGGWCCY	2 cut(s)	156, 1968
PscI	ACATGT	1 cut(s)	799
PshAI	GACNNNNGTC	1 cut(s)	783
PshBI	ATTAAT	4 cut(s)	381, 474, 1044, 3824
Psp5II	RGGWCCY	2 cut(s)	156, 1968
Psp6I	CCWGG	3 cut(s)	842, 2241, 3178
PspEI	GGTNACC	1 cut(s)	3656
PspFI	CCCAGC	1 cut(s)	3111
PspGI	CCWGG	3 cut(s)	842, 2241, 3178
PspLI	CGTACG	1 cut(s)	1116
PspPPI	RGGWCCY	2 cut(s)	156, 1968
PspXI	VCTCGAGB	2 cut(s)	1983, 2445
PsrI	GAACNNNNNNTAC	4 cut(s)	481, 513, 3112, 3144
PstI	CTGCAG	2 cut(s)	2205, 2524
PstNI	CAGNNNCTG	1 cut(s)	4601
PsuI	RGATCY	4 cut(s)	1241, 1458, 2544, 3995
PvuI	CGATCG	2 cut(s)	1692, 3271
PvuII	CAGCTG	1 cut(s)	194
RsaI	GTAC	9 cut(s)	529, 754, 1067, 1118, 1414, 2167, 3282, 3698, 4359
RsaNI	GTAC	9 cut(s)	528, 753, 1066, 1117, 1413, 2166, 3281, 3697, 4358
RseI	CAYNNNNRTG	4 cut(s)	828, 3770, 4457, 4566
ScaI	AGTACT	1 cut(s)	3282
SchI	GAGTC	3 cut(s)	2618, 3185, 3634
ScrFI	CCNGG	8 cut(s)	121, 144, 844, 1910, 2243, 3180, 4000, 4303
SduI	GDGCHC	8 cut(s)	243, 287, 624, 1039, 1984, 2256, 4294, 4387
SfaNI	GCATC	4 cut(s)	1016, 1190, 3216, 3427
SfcI	CTRYAG	5 cut(s)	1501, 1951, 2201, 2520, 2686
SfoI	GGCGCC	1 cut(s)	1807
Sfr274I	CTCGAG	2 cut(s)	1983, 2445
SfuI	TTCGAA	3 cut(s)	21, 27, 3206
SinI	GGWCC	5 cut(s)	123, 156, 599, 1968, 3259
SlaI	CTCGAG	2 cut(s)	1983, 2445
SmiMI	CAYNNNNRTG	4 cut(s)	828, 3770, 4457, 4566
SmlI	CTYRAG	7 cut(s)	355, 419, 1983, 2445, 2808, 3295, 4257
SmoI	CTYRAG	7 cut(s)	355, 419, 1983, 2445, 2808, 3295, 4257
SspDI	GGCGCC	1 cut(s)	1805
SspI	AATATT	1 cut(s)	4168
StyD4I	CCNGG	8 cut(s)	119, 142, 842, 1908, 2241, 3178, 3998, 4301
StyI	CCWWGG	7 cut(s)	446, 781, 1061, 1851, 2161, 3382, 3771
TaiI	ACGT	4 cut(s)	207, 1118, 2010, 3933
TaqII	GACCGA	1 cut(s)	3247
TatI	WGTACW	2 cut(s)	3280, 3696
TauI	GCSGC	2 cut(s)	867, 1811
TfiI	GAWTC	8 cut(s)	1109, 1129, 2044, 2433, 2469, 2510, 3239, 4397
TscAI	CASTG	7 cut(s)	595, 1804, 2412, 2500, 3978, 3984, 4392
TseFI	GTSAC	7 cut(s)	785, 795, 821, 2755, 3493, 3576, 3895
Tsp45I	GTSAC	7 cut(s)	785, 795, 821, 2755, 3493, 3576, 3895
TspRI	CASTG	7 cut(s)	595, 1804, 2412, 2500, 3978, 3984, 4392
Van91I	CCANNNNNTGG	2 cut(s)	249, 2665
VneI	GTGCAC	1 cut(s)	4383
VpaK11BI	GGWCC	5 cut(s)	123, 156, 599, 1968, 3259
VspI	ATTAAT	4 cut(s)	381, 474, 1044, 3824
XagI	CCTNNNNNAGG	1 cut(s)	2160
XapI	RAATTY	7 cut(s)	23, 1341, 1997, 2599, 3202, 3412, 3702
XbaI	TCTAGA	1 cut(s)	4366
XceI	RCATGY	1 cut(s)	803
XhoI	CTCGAG	2 cut(s)	1983, 2445
ZrmI	AGTACT	1 cut(s)	3282
Zsp2I	ATGCAT	4 cut(s)	1031, 1338, 2784, 4615

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.