MD09G1179500.v1.1

phosphatase 2c

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr09
OG0006212
Physical Location & Seq
Forward (+)
15368755 .. 15369159
405 bp
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UTR
Exon/CDS
Intron
MD09G1179500.v1.1.491

Sequence Viewer

Length: 405 bp
ATGGGTTCGTGTTGTTCGACGCAGAAAAGCTTAGGGCAGAGGATTGACATGGTGGAGGAGCAGAGCAAAGTGGATTACACAGACGACGCTTCTCCGAAGGCCAGAGGCGGCTCGAAACGGTGGAAGAGGAAGAAGCCGAGAGGTGAGCAAGTGGATTGCAGAGACTTGGGCCATCAGATTGATATTCCGGGTAGATTGATCGGCAATGGAAGTAGCAAAGTCGCCTGCTTGTATACCCAGCAGGGAAAGAAAGGGACCAATCAGGACGCCATGCTTGTCTGGGAGAATTTCGCCACAAGAAGTGATACAACATTTTGTGGGGTGTTTGACGGGCATGGTCCATTTGGTCATATGGTCGCCAAGAAAGTTCGGGACTCTCTTCCTCTTATACTATGCACTCAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005623 GO:0005886 GO:0016020 GO:0044464 GO:0071944
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PP2C

Protein Analysis

135

Amino Acids

14.79

Weight (kDa)

9.11

Isoelectric Point (pI)

37.43

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 233
AciI CCGC 1 cut(s) 108
AcsI RAATTY 1 cut(s) 286
AcyI GRCGYC 1 cut(s) 267
AluBI AGCT 1 cut(s) 30
AluI AGCT 1 cut(s) 30
Alw26I GTCTC 1 cut(s) 156
AoxI GGCC 2 cut(s) 99, 169
ApoI RAATTY 1 cut(s) 286
AspS9I GGNCC 3 cut(s) 169, 255, 338
AsuC2I CCSGG 1 cut(s) 189
AsuHPI GGTGA 1 cut(s) 155
AvaII GGWCC 2 cut(s) 255, 338
BccI CCATC 1 cut(s) 180
BcnI CCSGG 1 cut(s) 189
BcoDI GTCTC 1 cut(s) 156
BisI GCNGC 1 cut(s) 109
BlsI GCNGC 1 cut(s) 110
Bme1390I CCNGG 1 cut(s) 189
Bme18I GGWCC 2 cut(s) 255, 338
BmgT120I GGNCC 3 cut(s) 169, 255, 338
BmiI GGNNCC 1 cut(s) 256
BmrFI CCNGG 1 cut(s) 189
Bpu10I CCTNAGC 1 cut(s) 31
BpuMI CCSGG 1 cut(s) 189
BsaHI GRCGYC 1 cut(s) 267
Bse3DI GCAATG 1 cut(s) 211
BseMI GCAATG 1 cut(s) 211
BseRI GAGGAG 1 cut(s) 71
BseYI CCCAGC 1 cut(s) 237
BshFI GGCC 2 cut(s) 101, 171
BsiSI CCGG 1 cut(s) 188
BslFI GGGAC 2 cut(s) 268, 386
BsmAI GTCTC 1 cut(s) 156
BsmFI GGGAC 2 cut(s) 268, 386
BsnI GGCC 2 cut(s) 101, 171
Bsp143I GATC 1 cut(s) 198
BspACI CCGC 1 cut(s) 108
BspANI GGCC 2 cut(s) 101, 171
BspLI GGNNCC 1 cut(s) 256
BsrDI GCAATG 1 cut(s) 211
BssMI GATC 1 cut(s) 198
BssNAI GTATAC 1 cut(s) 234
BssNI GRCGYC 1 cut(s) 267
Bst1107I GTATAC 1 cut(s) 234
Bst4CI ACNGT 1 cut(s) 120
Bst6I CTCTTC 2 cut(s) 119, 384
BstACI GRCGYC 1 cut(s) 267
BstC8I GCNNGC 1 cut(s) 226
BstDEI CTNAG 2 cut(s) 31, 399
BstKTI GATC 1 cut(s) 201
BstMAI GTCTC 1 cut(s) 156
BstMBI GATC 1 cut(s) 198
BstSCI CCNGG 1 cut(s) 187
BstZ17I GTATAC 1 cut(s) 234
BsuRI GGCC 2 cut(s) 101, 171
Cac8I GCNNGC 1 cut(s) 226
Cfr13I GGNCC 3 cut(s) 169, 255, 338
CseI GACGC 3 cut(s) 28, 95, 275
CviAII CATG 3 cut(s) 49, 271, 335
CviJI RGCY 5 cut(s) 30, 101, 111, 136, 171
CviKI_1 RGCY 5 cut(s) 30, 101, 111, 136, 171
DdeI CTNAG 2 cut(s) 31, 399
DpnI GATC 1 cut(s) 200
DpnII GATC 1 cut(s) 198
Eam1104I CTCTTC 2 cut(s) 119, 384
EarI CTCTTC 2 cut(s) 119, 384
Eco47I GGWCC 2 cut(s) 255, 338
FaeI CATG 3 cut(s) 52, 274, 338
FaiI YATR 8 cut(s) 50, 234, 272, 336, 351, 353, 389, 394
FaqI GGGAC 2 cut(s) 268, 386
FatI CATG 3 cut(s) 48, 270, 334
FauNDI CATATG 1 cut(s) 351
FblI GTMKAC 1 cut(s) 233
Fnu4HI GCNGC 1 cut(s) 109
Fsp4HI GCNGC 1 cut(s) 109
GluI GCNGC 1 cut(s) 109
GsaI CCCAGC 1 cut(s) 241
HaeIII GGCC 2 cut(s) 101, 171
HapII CCGG 1 cut(s) 188
HgaI GACGC 3 cut(s) 28, 95, 275
Hin1I GRCGYC 1 cut(s) 267
Hin1II CATG 3 cut(s) 52, 274, 338
HindIII AAGCTT 1 cut(s) 28
HinfI GANTC 1 cut(s) 374
HpaII CCGG 1 cut(s) 188
HphI GGTGA 1 cut(s) 155
Hpy166II GTNNAC 1 cut(s) 234
Hpy188I TCNGA 2 cut(s) 96, 177
Hpy188III TCNNGA 2 cut(s) 263, 371
Hpy8I GTNNAC 1 cut(s) 234
Hpy99I CGWCG 2 cut(s) 22, 89
HpyAV CCTTC 1 cut(s) 91
HpyCH4III ACNGT 1 cut(s) 120
HpyCH4V TGCA 2 cut(s) 159, 396
HpyF3I CTNAG 2 cut(s) 31, 399
Hsp92I GRCGYC 1 cut(s) 267
Hsp92II CATG 3 cut(s) 52, 274, 338
Kzo9I GATC 1 cut(s) 198
LmnI GCTCC 1 cut(s) 58
LpnPI CCDG 7 cut(s) 115, 201, 227, 238, 248, 251, 265
MalI GATC 1 cut(s) 200
MboI GATC 1 cut(s) 198
MboII GAAGA 3 cut(s) 136, 142, 371
MluCI AATT 1 cut(s) 286
MlyI GAGTC 1 cut(s) 368
MnlI CCTC 6 cut(s) 33, 49, 98, 120, 134, 393
MspI CCGG 1 cut(s) 188
MspR9I CCNGG 1 cut(s) 189
NciI CCSGG 1 cut(s) 189
NdeI CATATG 1 cut(s) 351
NdeII GATC 1 cut(s) 198
NlaIII CATG 3 cut(s) 52, 274, 338
NlaIV GGNNCC 1 cut(s) 256
NmeAIII GCCGAG 1 cut(s) 162
PcsI WCGNNNNNNNCGW 1 cut(s) 14
PkrI GCNGC 1 cut(s) 110
PleI GAGTC 1 cut(s) 368
PpsI GAGTC 1 cut(s) 368
PspFI CCCAGC 1 cut(s) 237
PspN4I GGNNCC 1 cut(s) 256
PspPI GGNCC 3 cut(s) 169, 255, 338
SatI GCNGC 1 cut(s) 109
Sau3AI GATC 1 cut(s) 198
Sau96I GGNCC 3 cut(s) 169, 255, 338
SchI GAGTC 1 cut(s) 368
ScrFI CCNGG 1 cut(s) 189
SetI ASST 2 cut(s) 32, 145
SinI GGWCC 2 cut(s) 255, 338
Sse9I AATT 1 cut(s) 286
SsiI CCGC 1 cut(s) 108
StyD4I CCNGG 1 cut(s) 187
TaaI ACNGT 1 cut(s) 120
TaqI TCGA 2 cut(s) 17, 113
TasI AATT 1 cut(s) 286
TauI GCSGC 1 cut(s) 111
VpaK11BI GGWCC 2 cut(s) 255, 338
XapI RAATTY 1 cut(s) 286
XmiI GTMKAC 1 cut(s) 233
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.