Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000005

Orthogroup ID

OG0004387

Physical Location & Seq

Genomic Coordinates Forward (+)

59694743 .. 59698749

Gene Structure 4007 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug05G0429100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1203 bp

ATGACCCAGTCGCCTTCAGACTCACTCCTCGATCATCATCCTCGTCCTCATCTTCTTGTGCCCGAAATCCCAATTGAGATCGTAAGCGACGAAGAGATGGCTCTGCTCGAAGCCGCCTTGCTCTCCGCTCGCTCTCTAATCCCTTCCACAGTGAGAGCGTTCCCTTCATTTCGATCCTCTCACTTCCCTTCCAACGCCAGGTCTATTCAGTCCATCACCCTCGTTTCCAAGAAGAGGTTTTCGGGTTGCTCCCAACCCGATATTGAGGATTCGGGTTTAGGGTTCAACACCACCCAGAAGAAGACCCGGTTGGCTGAGTCGTTTTTGCACCGCTTCAGGAGGAAGAAGGGCTTGTGCGTCACCGATTTAACTTCCGCGGAATGGTGTGAAAAACAGATGGAGTTTGAGCTCCTCGGCGGCAAGAAAAAAATTAGTAAGGCTATGAAAGCTGGTAGTAAGCGCCATGCAAAACTCGAAGAAGAGGTTCTAACAAGAGTTAAAGTTGATATCAAATCAGACGAAGATAAATTTGCTCTGAAGCTTTTGAATTGTATTACCGGCATAAATCAATTACAATTTGAAGGATTGACTCGAGAGCTACCTCTCATAGGTTTTGTAGAAGGTGTATGGATGGTGGGAGTGATTGATGAGGTTCAAATGCCTGCAACAGAAACCCAGAGAAATCCATTATTAGTTGACACAAAGACTCGTGTGAAAGATACACTTCCTGCTGAACCTCAACGAAGGAATGGAAGGCTTCAATTGATGTGCTACAAGTATATGTGGGACAATTTAGTTACTTCTGAATTCCCCTCCGACCAATTCTTTGATTATTTTTCCTTAAATCCTGATTGTGACTTATCTGAAGAAATCAGGGAGGTCACAGCTAAATCAGGGTGTCCAGCAAAGACCCTTGATGACGTAGTGAGATACTATAGAAATACCTGGAGCATGCTACCCCCTGCTCATGACCAACTTTTATTGAGATACGAGTTACAAAAAGACCATTCACTAATCGGCGAAGATAAATTTGCATACGACTCTGATTGGGTTGAGAAGCAAATTCAGTTTTCTCTCGAGTTCTGGTTAGGAGAGCGAGAAGCCAGTTACACTCCTGAGGAAGAGCGATGGAAATGCAACTTCTGTCAATTTGCTTCCACATGTCCTGCTAAAAGTGTAACCTGCAGCAACCTCCCGACTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006950 GO:0006970 GO:0008150 GO:0009628 GO:0009651 GO:0009987 GO:0019725 GO:0042592 GO:0043167 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0045454 GO:0046872 GO:0046914 GO:0050789 GO:0050794 GO:0050896 GO:0050897 GO:0065007 GO:0065008

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

TRAM_LAG1_CLN8

Protein Analysis

400

Amino Acids

45.79

Weight (kDa)

5.87

Isoelectric Point (pI)

48.02

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Exo5	PF09810	107 - 224	2.5e-37	Exonuclease V - a 5' deoxyribonuclease
PDDEXK_1	PF12705	189 - 389	2.5e-06	PD-(D/E)XK nuclease superfamily
Exo5	PF09810	224 - 292	4.7e-08	Exonuclease V - a 5' deoxyribonuclease
Exo5	PF09810	322 - 388	1.8e-11	Exonuclease V - a 5' deoxyribonuclease

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004387)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G10360 AT4G10360 AT4G10360
fragaria_vesca	FvH4_3g41280 FvH4_3g41280 FvH4_3g41280 FvH4_3g41280 FvH4_3g41280 FvH4_3g41280 FvH4_3g41280 FvH4_3g41280 FvH4_3g41280
malus_domestica	MD03G1046000.v1.1 MD11G1048300.v1.1
prunus_persica	Prupe.6G037300_v2.0.a1 Prupe.6G037300_v2.0.a1 Prupe.6G037300_v2.0.a1 Prupe.6G037300_v2.0.a1 Prupe.6G037300_v2.0.a1 Prupe.6G037300_v2.0.a1
pyrus_communis	pycom03g03620 pycom11g03940
rosa_chinensis	RchiOBHm_Chr5g0074081
rosa_laevigata	RLG00000036452
rosa_multiflora	Rmu_sc0000573.1_g000071
rosa_roxburghii	Rroxscaffold_1G00007320
rosa_rugosa	Rorug05G0429100
rosa_samantha	Rh5AG486700 Rh5BG507000 Rh5CG530500 Rh5DG519400
rosa_wichuraiana	Rw5G045170

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	1190
AccBSI	CCGCTC	1 cut(s)	128
AccII	CGCG	1 cut(s)	377
AciI	CCGC	6 cut(s)	114, 126, 331, 375, 377, 417
AclWI	GGATC	1 cut(s)	168
AcsI	RAATTY	4 cut(s)	527, 806, 1028, 1062
AcuI	CTGAAG	3 cut(s)	319, 557, 885
AfiI	CCNNNNNNNGG	4 cut(s)	198, 234, 381, 608
AflIII	ACRYGT	1 cut(s)	1160
AgsI	TTSAA	5 cut(s)	286, 547, 581, 656, 761
AjnI	CCWGG	2 cut(s)	197, 944
AjuI	GAANNNNNNNTTGG	2 cut(s)	293, 325
AluBI	AGCT	5 cut(s)	409, 449, 541, 598, 887
AluI	AGCT	5 cut(s)	409, 449, 541, 598, 887
Alw21I	GWGCWC	1 cut(s)	411
AlwI	GGATC	1 cut(s)	168
Ama87I	CYCGRG	2 cut(s)	591, 1076
ApeKI	GCWGC	1 cut(s)	1185
ApoI	RAATTY	4 cut(s)	527, 806, 1028, 1062
ArsI	GACNNNNNNTTYG	2 cut(s)	809, 841
Asp700I	GAANNNNTTC	1 cut(s)	483
AspLEI	GCGC	1 cut(s)	462
AsuC2I	CCSGG	1 cut(s)	307
AsuHPI	GGTGA	2 cut(s)	208, 352
AvaI	CYCGRG	2 cut(s)	591, 1076
AxyI	CCTNAGG	1 cut(s)	1116
BaeGI	GKGCMC	1 cut(s)	63
BanII	GRGCYC	1 cut(s)	411
BauI	CACGAG	1 cut(s)	708
BbsI	GAAGAC	1 cut(s)	308
Bbv12I	GWGCWC	1 cut(s)	411
BbvI	GCAGC	1 cut(s)	1197
BccI	CCATC	5 cut(s)	91, 221, 391, 625, 1122
BcgI	CGANNNNNNTGC	2 cut(s)	1116, 1150
BciT130I	CCWGG	2 cut(s)	199, 946
BcnI	CCSGG	1 cut(s)	307
BfmI	CTRYAG	2 cut(s)	934, 1183
BfoI	RGCGCY	1 cut(s)	463
BfuAI	ACCTGC	1 cut(s)	1190
BisI	GCNGC	3 cut(s)	114, 418, 1186
BlsI	GCNGC	3 cut(s)	115, 419, 1187
Bme1390I	CCNGG	3 cut(s)	199, 307, 946
BmeT110I	CYCGRG	2 cut(s)	591, 1076
BmrFI	CCNGG	3 cut(s)	199, 307, 946
BpiI	GAAGAC	1 cut(s)	308
BpmI	CTGGAG	1 cut(s)	967
BpuMI	CCSGG	1 cut(s)	307
BsaBI	GATNNNNATC	1 cut(s)	36
BsaJI	CCNNGG	2 cut(s)	375, 412
Bsc4I	CCNNNNNNNGG	4 cut(s)	198, 234, 381, 608
Bse118I	RCCGGY	1 cut(s)	557
Bse1I	ACTGG	2 cut(s)	7, 1104
Bse21I	CCTNAGG	1 cut(s)	1116
Bse8I	GATNNNNATC	1 cut(s)	36
BseBI	CCWGG	2 cut(s)	199, 946
BseDI	CCNNGG	2 cut(s)	375, 412
BseGI	GGATG	2 cut(s)	37, 636
BseJI	GATNNNNATC	1 cut(s)	36
BseLI	CCNNNNNNNGG	4 cut(s)	198, 234, 381, 608
BseMII	CTCAG	2 cut(s)	306, 1107
BseNI	ACTGG	2 cut(s)	7, 1104
BseRI	GAGGAG	2 cut(s)	17, 401
BseSI	GKGCMC	1 cut(s)	63
BseXI	GCAGC	1 cut(s)	1197
Bsh1236I	CGCG	1 cut(s)	377
BsiHKAI	GWGCWC	1 cut(s)	411
BsiHKCI	CYCGRG	2 cut(s)	591, 1076
BsiSI	CCGG	2 cut(s)	307, 558
BslFI	GGGAC	1 cut(s)	800
BslI	CCNNNNNNNGG	4 cut(s)	198, 234, 381, 608
BsmFI	GGGAC	1 cut(s)	800
BsoBI	CYCGRG	2 cut(s)	591, 1076
Bsp1286I	GDGCHC	2 cut(s)	63, 411
Bsp143I	GATC	3 cut(s)	31, 78, 173
BspACI	CCGC	6 cut(s)	114, 126, 331, 375, 377, 417
BspCNI	CTCAG	2 cut(s)	307, 1108
BspFNI	CGCG	1 cut(s)	377
BspHI	TCATGA	1 cut(s)	967
BspMAI	CTGCAG	1 cut(s)	1187
BspMI	ACCTGC	1 cut(s)	1190
BspPI	GGATC	1 cut(s)	168
BspQI	GCTCTTC	1 cut(s)	1116
BsrBI	CCGCTC	1 cut(s)	128
BsrFI	RCCGGY	1 cut(s)	557
BsrI	ACTGG	2 cut(s)	7, 1104
BssAI	RCCGGY	1 cut(s)	557
BssECI	CCNNGG	2 cut(s)	375, 412
BssMI	GATC	3 cut(s)	31, 78, 173
BssSI	CACGAG	1 cut(s)	708
Bst2BI	CACGAG	1 cut(s)	708
Bst2UI	CCWGG	2 cut(s)	199, 946
Bst4CI	ACNGT	1 cut(s)	151
Bst6I	CTCTTC	4 cut(s)	87, 227, 474, 1116
BstC8I	GCNNGC	3 cut(s)	130, 663, 953
BstDEI	CTNAG	3 cut(s)	315, 1116, 1200
BstDSI	CCRYGG	1 cut(s)	375
BstENI	CCTNNNNNAGG	1 cut(s)	606
BstF5I	GGATG	2 cut(s)	37, 636
BstFNI	CGCG	1 cut(s)	377
BstH2I	RGCGCY	1 cut(s)	463
BstHHI	GCGC	1 cut(s)	462
BstKTI	GATC	3 cut(s)	34, 81, 176
BstMBI	GATC	3 cut(s)	31, 78, 173
BstMWI	GCNNNNNNNGC	1 cut(s)	446
BstNI	CCWGG	2 cut(s)	199, 946
BstNSI	RCATGY	2 cut(s)	955, 1164
BstSCI	CCNGG	3 cut(s)	197, 305, 944
BstSFI	CTRYAG	2 cut(s)	934, 1183
BstSLI	GKGCMC	1 cut(s)	63
BstUI	CGCG	1 cut(s)	377
BstV1I	GCAGC	1 cut(s)	1197
BstV2I	GAAGAC	1 cut(s)	308
Bsu36I	CCTNAGG	1 cut(s)	1116
BtgI	CCRYGG	1 cut(s)	375
BtgZI	GCGATG	1 cut(s)	1141
BtsCI	GGATG	2 cut(s)	37, 636
BtsIMutI	CAGTG	1 cut(s)	156
BveI	ACCTGC	1 cut(s)	1190
Cac8I	GCNNGC	3 cut(s)	130, 663, 953
CciI	TCATGA	1 cut(s)	967
CfoI	GCGC	1 cut(s)	462
Cfr10I	RCCGGY	1 cut(s)	557
Cfr42I	CCGCGG	1 cut(s)	378
CseI	GACGC	1 cut(s)	346
CviAII	CATG	4 cut(s)	464, 952, 968, 1161
DdeI	CTNAG	3 cut(s)	315, 1116, 1200
DpnI	GATC	3 cut(s)	33, 80, 175
DpnII	GATC	3 cut(s)	31, 78, 173
Eam1104I	CTCTTC	4 cut(s)	87, 227, 474, 1116
EarI	CTCTTC	4 cut(s)	87, 227, 474, 1116
Ecl136II	GAGCTC	1 cut(s)	409
Eco24I	GRGCYC	1 cut(s)	411
Eco32I	GATATC	1 cut(s)	508
Eco53kI	GAGCTC	1 cut(s)	409
Eco57I	CTGAAG	3 cut(s)	319, 557, 885
Eco81I	CCTNAGG	1 cut(s)	1116
Eco88I	CYCGRG	2 cut(s)	591, 1076
EcoICRI	GAGCTC	1 cut(s)	409
EcoNI	CCTNNNNNAGG	1 cut(s)	606
EcoRI	GAATTC	1 cut(s)	806
EcoRII	CCWGG	2 cut(s)	197, 944
EcoRV	GATATC	1 cut(s)	508
EcoT38I	GRGCYC	1 cut(s)	411
FaeI	CATG	4 cut(s)	467, 955, 971, 1164
FalI	AAGNNNNNCTT	4 cut(s)	335, 367, 708, 740
FaqI	GGGAC	1 cut(s)	800
FatI	CATG	4 cut(s)	463, 951, 967, 1160
Fnu4HI	GCNGC	3 cut(s)	114, 418, 1186
FokI	GGATG	2 cut(s)	24, 643
FriOI	GRGCYC	1 cut(s)	411
Fsp4HI	GCNGC	3 cut(s)	114, 418, 1186
GlaI	GCGC	1 cut(s)	461
GluI	GCNGC	3 cut(s)	114, 418, 1186
GsuI	CTGGAG	1 cut(s)	967
HaeII	RGCGCY	1 cut(s)	463
HapII	CCGG	2 cut(s)	307, 558
HgaI	GACGC	1 cut(s)	346
HhaI	GCGC	1 cut(s)	462
Hin1II	CATG	4 cut(s)	467, 955, 971, 1164
Hin6I	GCGC	1 cut(s)	460
HinP1I	GCGC	1 cut(s)	460
HincII	GTYRAC	1 cut(s)	697
HindII	GTYRAC	1 cut(s)	697
HindIII	AAGCTT	1 cut(s)	539
HinfI	GANTC	6 cut(s)	20, 269, 317, 589, 706, 1040
HpaII	CCGG	2 cut(s)	307, 558
HphI	GGTGA	2 cut(s)	208, 352
Hpy166II	GTNNAC	1 cut(s)	697
Hpy188I	TCNGA	7 cut(s)	19, 517, 537, 805, 817, 865, 1045
Hpy188III	TCNNGA	7 cut(s)	337, 593, 848, 968, 1076, 1115, 1195
Hpy8I	GTNNAC	1 cut(s)	697
Hpy99I	CGWCG	1 cut(s)	92
HpyAV	CCTTC	9 cut(s)	24, 153, 174, 198, 340, 575, 614, 738, 747
HpyCH4III	ACNGT	1 cut(s)	151
HpyCH4IV	ACGT	1 cut(s)	921
HpyCH4V	TGCA	6 cut(s)	328, 467, 665, 1034, 1137, 1185
HpyF10VI	GCNNNNNNNGC	1 cut(s)	446
HpyF3I	CTNAG	3 cut(s)	315, 1116, 1200
HpySE526I	ACGT	1 cut(s)	921
Hsp92II	CATG	4 cut(s)	467, 955, 971, 1164
HspAI	GCGC	1 cut(s)	460
KspI	CCGCGG	1 cut(s)	378
Kzo9I	GATC	3 cut(s)	31, 78, 173
LguI	GCTCTTC	1 cut(s)	1116
LmnI	GCTCC	3 cut(s)	254, 414, 948
Lsp1109I	GCAGC	1 cut(s)	1197
MaeII	ACGT	1 cut(s)	921
MaeIII	GTNAC	7 cut(s)	358, 796, 854, 880, 993, 1106, 1177
MalI	GATC	3 cut(s)	33, 80, 175
MbiI	CCGCTC	1 cut(s)	128
MboI	GATC	3 cut(s)	31, 78, 173
MfeI	CAATTG	2 cut(s)	72, 761
MhlI	GDGCHC	2 cut(s)	63, 411
MlyI	GAGTC	5 cut(s)	14, 326, 583, 700, 1034
MmeI	TCCRAC	2 cut(s)	216, 840
MroXI	GAANNNNTTC	1 cut(s)	483
MseI	TTAA	3 cut(s)	368, 498, 842
MspA1I	CMGCKG	1 cut(s)	377
MspI	CCGG	2 cut(s)	307, 558
MspR9I	CCNGG	3 cut(s)	199, 307, 946
MunI	CAATTG	2 cut(s)	72, 761
MvaI	CCWGG	2 cut(s)	199, 946
MvnI	CGCG	1 cut(s)	377
MwoI	GCNNNNNNNGC	1 cut(s)	446
NciI	CCSGG	1 cut(s)	307
NdeII	GATC	3 cut(s)	31, 78, 173
NlaIII	CATG	4 cut(s)	467, 955, 971, 1164
NmeAIII	GCCGAG	1 cut(s)	393
NmuCI	GTSAC	3 cut(s)	358, 854, 880
NspI	RCATGY	2 cut(s)	955, 1164
PaeI	GCATGC	1 cut(s)	955
PaeR7I	CTCGAG	2 cut(s)	591, 1076
PagI	TCATGA	1 cut(s)	967
PciI	ACATGT	1 cut(s)	1160
PciSI	GCTCTTC	1 cut(s)	1116
PcsI	WCGNNNNNNNCGW	1 cut(s)	87
PdmI	GAANNNNTTC	1 cut(s)	483
PfeI	GAWTC	1 cut(s)	269
PflFI	GACNNNGTC	1 cut(s)	7
PkrI	GCNGC	3 cut(s)	115, 419, 1187
PleI	GAGTC	5 cut(s)	14, 325, 583, 700, 1034
PpsI	GAGTC	5 cut(s)	14, 325, 583, 700, 1034
PscI	ACATGT	1 cut(s)	1160
Psp124BI	GAGCTC	1 cut(s)	411
Psp6I	CCWGG	2 cut(s)	197, 944
PspGI	CCWGG	2 cut(s)	197, 944
PstI	CTGCAG	1 cut(s)	1187
PsyI	GACNNNGTC	1 cut(s)	7
SacI	GAGCTC	1 cut(s)	411
SacII	CCGCGG	1 cut(s)	378
SapI	GCTCTTC	1 cut(s)	1116
SaqAI	TTAA	3 cut(s)	368, 498, 842
SatI	GCNGC	3 cut(s)	114, 418, 1186
Sau3AI	GATC	3 cut(s)	31, 78, 173
SchI	GAGTC	5 cut(s)	14, 326, 583, 700, 1034
ScrFI	CCNGG	3 cut(s)	199, 307, 946
SduI	GDGCHC	2 cut(s)	63, 411
SfcI	CTRYAG	2 cut(s)	934, 1183
Sfr274I	CTCGAG	2 cut(s)	591, 1076
Sfr303I	CCGCGG	1 cut(s)	378
SgrBI	CCGCGG	1 cut(s)	378
SlaI	CTCGAG	2 cut(s)	591, 1076
SmlI	CTYRAG	2 cut(s)	591, 1076
SmoI	CTYRAG	2 cut(s)	591, 1076
SphI	GCATGC	1 cut(s)	955
SsiI	CCGC	6 cut(s)	114, 126, 331, 375, 377, 417
SstI	GAGCTC	1 cut(s)	411
StyD4I	CCNGG	3 cut(s)	197, 305, 944
TaaI	ACNGT	1 cut(s)	151
TaiI	ACGT	1 cut(s)	924
TaqI	TCGA	6 cut(s)	30, 108, 172, 474, 592, 1077
TauI	GCSGC	2 cut(s)	116, 420
TfiI	GAWTC	1 cut(s)	269
Tru1I	TTAA	3 cut(s)	368, 498, 842
Tru9I	TTAA	3 cut(s)	368, 498, 842
TscAI	CASTG	1 cut(s)	156
TseFI	GTSAC	3 cut(s)	358, 854, 880
TseI	GCWGC	1 cut(s)	1185
Tsp45I	GTSAC	3 cut(s)	358, 854, 880
TspDTI	ATGAA	2 cut(s)	156, 458
TspRI	CASTG	1 cut(s)	156
Tth111I	GACNNNGTC	1 cut(s)	7
XagI	CCTNNNNNAGG	1 cut(s)	606
XapI	RAATTY	4 cut(s)	527, 806, 1028, 1062
XceI	RCATGY	2 cut(s)	955, 1164
XhoI	CTCGAG	2 cut(s)	591, 1076
XmnI	GAANNNNTTC	1 cut(s)	483

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.