Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0004387

Physical Location & Seq

Genomic Coordinates Forward (+)

6420284 .. 6422460

Gene Structure 2177 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT4G10360.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 801 bp

ATGACAACCGATTCTGATGATGGTTTCGTTTCTTCAAGACAACTCCTTTTGCTTGCTTCGATTTGTTCTGGTGCTCTCATGTGCAAAATCGTTTATGACTTGACTCGTTTCATAAGTCCATTGCTCTTCAGTGTTTATGGAAAACTTGACAGCAAAGTTAGAATGGAATGGAACAATAGGGGATTCTCAACTTTTCATGCTGTGTTTACTTCTGTGGCTTCAATTTACTTCTTGGTGATATCTGATCAATTTGATGAGAATGTTCATGGTGATTCAGTCATTAATAGTACAACGAGGTTATCGGAATCTGTAATGGGGATCTCCTTAGGCTATTTTCTAGCAGACTTAGCAATGATCTTTTGGTATTTTCCTACTCTTGGTGGTATTGAATATGTTTTTCATCACTTCTTATCGATGTTTGCCATCATTCTTTCTGTCACAAGTGGGCAAAGTCAGTTCTACATCTTCTTAGTTCTCTTATCAGAGGCTACAACCCCGTTTGTTAATCTACGGTGGTACTTGGATAATAGTGGTCAAAAAGGCTCAAAGGCTTACACGCTCAACGGAATTGCTTTGTTCTTGGGGTGGCTGGTTGCGAGGGTCCTTTTGTTTATCTTCTTCTTTGTTCACATGTACCTCCATTTCCATCAGGTGAAGCAAGTGTTTCCACTGGGATTTTACAGCCTTCTTACGATACCACCGGCTCTAGCAGTGATGAATCTCCTTTGGTTCTGGAAAATCACCAAAGGATTGATCAAAACACTCTCCAAGGCGAAAACATCGGGGATGAAGAAACAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006950 GO:0006970 GO:0008150 GO:0009628 GO:0009651 GO:0009987 GO:0019725 GO:0042592 GO:0043167 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0045454 GO:0046872 GO:0046914 GO:0050789 GO:0050794 GO:0050896 GO:0050897 GO:0065007 GO:0065008

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

TRAM_LAG1_CLN8

Protein Analysis

266

Amino Acids

30.21

Weight (kDa)

9.13

Isoelectric Point (pI)

28.67

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
TRAM_LAG1_CLN8	PF03798	56 - 249	2.8e-35	TLC domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0004387)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G10360 AT4G10360 AT4G10360
fragaria_vesca	FvH4_3g41280 FvH4_3g41280 FvH4_3g41280 FvH4_3g41280 FvH4_3g41280 FvH4_3g41280 FvH4_3g41280 FvH4_3g41280 FvH4_3g41280
malus_domestica	MD03G1046000.v1.1 MD11G1048300.v1.1
prunus_persica	Prupe.6G037300_v2.0.a1 Prupe.6G037300_v2.0.a1 Prupe.6G037300_v2.0.a1 Prupe.6G037300_v2.0.a1 Prupe.6G037300_v2.0.a1 Prupe.6G037300_v2.0.a1
pyrus_communis	pycom03g03620 pycom11g03940
rosa_chinensis	RchiOBHm_Chr5g0074081
rosa_laevigata	RLG00000036452
rosa_multiflora	Rmu_sc0000573.1_g000071
rosa_roxburghii	Rroxscaffold_1G00007320
rosa_rugosa	Rorug05G0429100
rosa_samantha	Rh5AG486700 Rh5BG507000 Rh5CG530500 Rh5DG519400
rosa_wichuraiana	Rw5G045170

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	326
AcuI	CTGAAG	1 cut(s)	112
AfaI	GTAC	3 cut(s)	289, 518, 635
AfiI	CCNNNNNNNGG	1 cut(s)	377
AflIII	ACRYGT	1 cut(s)	630
AgsI	TTSAA	3 cut(s)	36, 222, 389
Alw21I	GWGCWC	1 cut(s)	76
AlwI	GGATC	1 cut(s)	326
AseI	ATTAAT	1 cut(s)	282
AspS9I	GGNCC	1 cut(s)	601
AsuHPI	GGTGA	4 cut(s)	247, 281, 664, 733
AvaII	GGWCC	1 cut(s)	601
AxyI	CCTNAGG	1 cut(s)	325
Bbv12I	GWGCWC	1 cut(s)	76
BccI	CCATC	3 cut(s)	14, 431, 654
BclI	TGATCA	2 cut(s)	244, 753
BfaI	CTAG	2 cut(s)	338, 707
Bme18I	GGWCC	1 cut(s)	601
BmgT120I	GGNCC	1 cut(s)	601
BmiI	GGNNCC	1 cut(s)	602
BmrI	ACTGGG	1 cut(s)	680
BmuI	ACTGGG	1 cut(s)	680
Bsa29I	ATCGAT	1 cut(s)	413
BsaJI	CCNNGG	1 cut(s)	768
Bsc4I	CCNNNNNNNGG	1 cut(s)	377
Bse118I	RCCGGY	1 cut(s)	700
Bse1I	ACTGG	1 cut(s)	675
Bse21I	CCTNAGG	1 cut(s)	325
Bse3DI	GCAATG	2 cut(s)	119, 357
BseCI	ATCGAT	1 cut(s)	413
BseDI	CCNNGG	1 cut(s)	768
BseGI	GGATG	1 cut(s)	792
BseLI	CCNNNNNNNGG	1 cut(s)	377
BseMI	GCAATG	2 cut(s)	119, 357
BseNI	ACTGG	1 cut(s)	675
BshVI	ATCGAT	1 cut(s)	413
BsiHKAI	GWGCWC	1 cut(s)	76
BsiSI	CCGG	1 cut(s)	701
BslI	CCNNNNNNNGG	1 cut(s)	377
Bsp1286I	GDGCHC	1 cut(s)	76
Bsp143I	GATC	4 cut(s)	244, 318, 354, 753
BspDI	ATCGAT	1 cut(s)	413
BspLI	GGNNCC	1 cut(s)	602
BspPI	GGATC	1 cut(s)	326
BspQI	GCTCTTC	1 cut(s)	131
BsrDI	GCAATG	2 cut(s)	119, 357
BsrFI	RCCGGY	1 cut(s)	700
BsrI	ACTGG	1 cut(s)	675
BssAI	RCCGGY	1 cut(s)	700
BssECI	CCNNGG	1 cut(s)	768
BssMI	GATC	4 cut(s)	244, 318, 354, 753
BssT1I	CCWWGG	1 cut(s)	768
Bst4CI	ACNGT	2 cut(s)	513, 798
Bst6I	CTCTTC	1 cut(s)	131
BstC8I	GCNNGC	1 cut(s)	54
BstDEI	CTNAG	3 cut(s)	325, 346, 469
BstF5I	GGATG	1 cut(s)	792
BstKTI	GATC	4 cut(s)	247, 321, 357, 756
BstMBI	GATC	4 cut(s)	244, 318, 354, 753
BstMWI	GCNNNNNNNGC	1 cut(s)	347
BstNSI	RCATGY	1 cut(s)	634
BstX2I	RGATCY	1 cut(s)	318
BstYI	RGATCY	1 cut(s)	318
Bsu15I	ATCGAT	1 cut(s)	413
Bsu36I	CCTNAGG	1 cut(s)	325
BsuTUI	ATCGAT	1 cut(s)	413
BtsCI	GGATG	1 cut(s)	792
BtsI	GCAGTG	1 cut(s)	717
BtsIMutI	CAGTG	3 cut(s)	136, 668, 717
Cac8I	GCNNGC	1 cut(s)	54
Cfr10I	RCCGGY	1 cut(s)	700
Cfr13I	GGNCC	1 cut(s)	601
ClaI	ATCGAT	1 cut(s)	413
Csp6I	GTAC	3 cut(s)	288, 517, 634
CviAII	CATG	4 cut(s)	79, 197, 266, 631
CviJI	RGCY	8 cut(s)	218, 330, 488, 543, 551, 589, 684, 704
CviKI_1	RGCY	8 cut(s)	218, 330, 488, 543, 551, 589, 684, 704
CviQI	GTAC	3 cut(s)	288, 517, 634
DdeI	CTNAG	3 cut(s)	325, 346, 469
DpnI	GATC	4 cut(s)	246, 320, 356, 755
DpnII	GATC	4 cut(s)	244, 318, 354, 753
Eam1104I	CTCTTC	1 cut(s)	131
EarI	CTCTTC	1 cut(s)	131
Eco130I	CCWWGG	1 cut(s)	768
Eco32I	GATATC	1 cut(s)	240
Eco47I	GGWCC	1 cut(s)	601
Eco57I	CTGAAG	1 cut(s)	112
Eco81I	CCTNAGG	1 cut(s)	325
EcoO109I	RGGNCCY	1 cut(s)	601
EcoRV	GATATC	1 cut(s)	240
EcoT14I	CCWWGG	1 cut(s)	768
ErhI	CCWWGG	1 cut(s)	768
FaeI	CATG	4 cut(s)	82, 200, 269, 634
FaiI	YATR	8 cut(s)	80, 96, 113, 138, 198, 267, 393, 632
FatI	CATG	4 cut(s)	78, 196, 265, 630
FbaI	TGATCA	2 cut(s)	244, 753
FspBI	CTAG	2 cut(s)	338, 707
HapII	CCGG	1 cut(s)	701
Hin1II	CATG	4 cut(s)	82, 200, 269, 634
HinfI	GANTC	6 cut(s)	11, 103, 183, 272, 305, 718
HpaII	CCGG	1 cut(s)	701
HphI	GGTGA	4 cut(s)	247, 281, 664, 733
Hpy166II	GTNNAC	2 cut(s)	207, 628
Hpy188I	TCNGA	4 cut(s)	16, 244, 304, 484
Hpy188III	TCNNGA	2 cut(s)	36, 733
Hpy8I	GTNNAC	2 cut(s)	207, 628
HpyAV	CCTTC	1 cut(s)	695
HpyCH4III	ACNGT	2 cut(s)	513, 798
HpyCH4V	TGCA	1 cut(s)	84
HpyF10VI	GCNNNNNNNGC	1 cut(s)	347
HpyF3I	CTNAG	3 cut(s)	325, 346, 469
Hsp92II	CATG	4 cut(s)	82, 200, 269, 634
Ksp22I	TGATCA	2 cut(s)	244, 753
Kzo9I	GATC	4 cut(s)	244, 318, 354, 753
LguI	GCTCTTC	1 cut(s)	131
LpnPI	CCDG	6 cut(s)	54, 575, 635, 656, 714, 718
MaeI	CTAG	2 cut(s)	338, 707
MaeIII	GTNAC	1 cut(s)	436
MalI	GATC	4 cut(s)	246, 320, 356, 755
MboI	GATC	4 cut(s)	244, 318, 354, 753
MboII	GAAGA	5 cut(s)	24, 118, 457, 607, 610
MflI	RGATCY	1 cut(s)	318
MhlI	GDGCHC	1 cut(s)	76
MluCI	AATT	3 cut(s)	222, 248, 567
MlyI	GAGTC	1 cut(s)	97
MnlI	CCTC	4 cut(s)	288, 478, 591, 647
MseI	TTAA	2 cut(s)	282, 504
MspI	CCGG	1 cut(s)	701
MwoI	GCNNNNNNNGC	1 cut(s)	347
NdeII	GATC	4 cut(s)	244, 318, 354, 753
NlaIII	CATG	4 cut(s)	82, 200, 269, 634
NlaIV	GGNNCC	1 cut(s)	602
NmuCI	GTSAC	1 cut(s)	436
NspI	RCATGY	1 cut(s)	634
PciI	ACATGT	1 cut(s)	630
PciSI	GCTCTTC	1 cut(s)	131
PfeI	GAWTC	5 cut(s)	11, 183, 272, 305, 718
PleI	GAGTC	1 cut(s)	97
PpsI	GAGTC	1 cut(s)	97
PpuMI	RGGWCCY	1 cut(s)	601
PscI	ACATGT	1 cut(s)	630
PshBI	ATTAAT	1 cut(s)	282
Psp5II	RGGWCCY	1 cut(s)	601
PspN4I	GGNNCC	1 cut(s)	602
PspPI	GGNCC	1 cut(s)	601
PspPPI	RGGWCCY	1 cut(s)	601
PsuI	RGATCY	1 cut(s)	318
RsaI	GTAC	3 cut(s)	289, 518, 635
RsaNI	GTAC	3 cut(s)	288, 517, 634
SapI	GCTCTTC	1 cut(s)	131
SaqAI	TTAA	2 cut(s)	282, 504
Sau3AI	GATC	4 cut(s)	244, 318, 354, 753
Sau96I	GGNCC	1 cut(s)	601
SchI	GAGTC	1 cut(s)	97
SduI	GDGCHC	1 cut(s)	76
SetI	ASST	3 cut(s)	299, 639, 654
SinI	GGWCC	1 cut(s)	601
Sse9I	AATT	3 cut(s)	222, 248, 567
SspMI	CTAG	2 cut(s)	338, 707
StyI	CCWWGG	1 cut(s)	768
TaaI	ACNGT	2 cut(s)	513, 798
TaqI	TCGA	2 cut(s)	59, 413
TasI	AATT	3 cut(s)	222, 248, 567
TatI	WGTACW	1 cut(s)	287
TfiI	GAWTC	5 cut(s)	11, 183, 272, 305, 718
Tru1I	TTAA	2 cut(s)	282, 504
Tru9I	TTAA	2 cut(s)	282, 504
TscAI	CASTG	3 cut(s)	136, 675, 717
TseFI	GTSAC	1 cut(s)	436
Tsp45I	GTSAC	1 cut(s)	436
TspDTI	ATGAA	5 cut(s)	100, 185, 254, 389, 731
TspGWI	ACGGA	1 cut(s)	579
TspRI	CASTG	3 cut(s)	136, 675, 717
VpaK11BI	GGWCC	1 cut(s)	601
VspI	ATTAAT	1 cut(s)	282
XceI	RCATGY	1 cut(s)	634
XspI	CTAG	2 cut(s)	338, 707

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.