Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr5

Orthogroup ID

OG0004387

Physical Location & Seq

Genomic Coordinates Reverse (-)

79005944 .. 79009626

Gene Structure 3683 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw5G045170.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 741 bp

ATGGTGGGATTTGCATATCCTCTTGGTTTCATGTCCACCAGTGGCTATGTCAGCCCAAACAAAGAGTTTCACTGGCTGGCTTCTGCCCTTTTTGGTATGCTTCTCTGCAAAATTGTTTACAAATTAACAGGTCTTATTAGCCTTCATAGCTTCAAGGAATATCAGAAATTGAGCAAAGCAGAAAAAGTTGAATGGAACAACCGGGGGTTCTCAACTGTTCATGCTATTGCTGTAGCGGTTGCATCTTTTTACCTTATACTCTTATCAGATACATTTCAGGAGGGTTATAGTGATGAGTTGATCGTTAGTAGAAGATCTACTTTTTCAGATACAACATTGGGGATCTCCATTGGTTATTTTCTGGCAGACATAGCAATGATTTTTTGGCATTTTCCTGCTTTAGGTGGACTGGAGTATGTTTTGCACCATGGACTATCTATGTTCTCAATCTTCCTTTCCCTTGTAAGTGGTGAAGGGCAGATTTACATACTAATGGTTCTGTTCTCTGAGAGCACAACTCCTTTTGTAAACCTAAGATGGTACTTGGATATTGCTGGTAAGAAGAACTCTAAGCTGTACGTCTGCAATGGTGTAGCATTGTTCCTGGGGTGGCTGGTTGCAAGGATTCTTTTGTTCATTTACTTTTTTGTCCACATGTTTTTCCATTTTCATCAAGTCAGACAATTTTTCCGTTGGGATTTTACAGCTTGCTCACGATACCTCCTGTGTTGGCAATCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006950 GO:0006970 GO:0008150 GO:0009628 GO:0009651 GO:0009987 GO:0019725 GO:0042592 GO:0043167 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0045454 GO:0046872 GO:0046914 GO:0050789 GO:0050794 GO:0050896 GO:0050897 GO:0065007 GO:0065008

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

TRAM_LAG1_CLN8

Protein Analysis

246

Amino Acids

28.31

Weight (kDa)

8.61

Isoelectric Point (pI)

32.48

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
TRAM_LAG1_CLN8	PF03798	64 - 232	6.9e-28	TLC domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004387)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G10360 AT4G10360 AT4G10360
fragaria_vesca	FvH4_3g41280 FvH4_3g41280 FvH4_3g41280 FvH4_3g41280 FvH4_3g41280 FvH4_3g41280 FvH4_3g41280 FvH4_3g41280 FvH4_3g41280
malus_domestica	MD03G1046000.v1.1 MD11G1048300.v1.1
prunus_persica	Prupe.6G037300_v2.0.a1 Prupe.6G037300_v2.0.a1 Prupe.6G037300_v2.0.a1 Prupe.6G037300_v2.0.a1 Prupe.6G037300_v2.0.a1 Prupe.6G037300_v2.0.a1
pyrus_communis	pycom03g03620 pycom11g03940
rosa_chinensis	RchiOBHm_Chr5g0074081
rosa_laevigata	RLG00000036452
rosa_multiflora	Rmu_sc0000573.1_g000071
rosa_roxburghii	Rroxscaffold_1G00007320
rosa_rugosa	Rorug05G0429100
rosa_samantha	Rh5AG486700 Rh5BG507000 Rh5CG530500 Rh5DG519400
rosa_wichuraiana	Rw5G045170

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	236
AclWI	GGATC	1 cut(s)	350
AfaI	GTAC	2 cut(s)	542, 578
AfiI	CCNNNNNNNGG	1 cut(s)	401
AflIII	ACRYGT	1 cut(s)	654
AgsI	TTSAA	2 cut(s)	154, 191
AjnI	CCWGG	1 cut(s)	603
AluBI	AGCT	3 cut(s)	150, 574, 707
AluI	AGCT	3 cut(s)	150, 574, 707
Alw21I	GWGCWC	1 cut(s)	515
AlwI	GGATC	1 cut(s)	350
AsuC2I	CCSGG	1 cut(s)	203
AsuHPI	GGTGA	1 cut(s)	482
Bbv12I	GWGCWC	1 cut(s)	515
BccI	CCATC	1 cut(s)	531
BciT130I	CCWGG	1 cut(s)	605
BcnI	CCSGG	1 cut(s)	203
BfmI	CTRYAG	1 cut(s)	231
BglII	AGATCT	1 cut(s)	314
Bme1390I	CCNGG	2 cut(s)	203, 605
BmrFI	CCNGG	2 cut(s)	203, 605
BmsI	GCATC	1 cut(s)	251
BplI	GAGNNNNNCTC	2 cut(s)	502, 534
BpmI	CTGGAG	1 cut(s)	431
BpuMI	CCSGG	1 cut(s)	203
BsaJI	CCNNGG	3 cut(s)	202, 427, 604
BsaXI	ACNNNNNCTCC	2 cut(s)	705, 735
Bsc4I	CCNNNNNNNGG	1 cut(s)	401
Bse1I	ACTGG	3 cut(s)	39, 77, 414
Bse3DI	GCAATG	2 cut(s)	381, 592
BseBI	CCWGG	1 cut(s)	605
BseDI	CCNNGG	3 cut(s)	202, 427, 604
BseLI	CCNNNNNNNGG	1 cut(s)	401
BseMI	GCAATG	2 cut(s)	381, 592
BseMII	CTCAG	1 cut(s)	498
BseNI	ACTGG	3 cut(s)	39, 77, 414
BsiHKAI	GWGCWC	1 cut(s)	515
BsiSI	CCGG	1 cut(s)	202
BslI	CCNNNNNNNGG	1 cut(s)	401
Bsp1286I	GDGCHC	1 cut(s)	515
Bsp143I	GATC	3 cut(s)	300, 314, 342
Bsp19I	CCATGG	1 cut(s)	427
BspACI	CCGC	1 cut(s)	236
BspCNI	CTCAG	1 cut(s)	499
BspHI	TCATGA	1 cut(s)	737
BspPI	GGATC	1 cut(s)	350
BsrDI	GCAATG	2 cut(s)	381, 592
BsrI	ACTGG	3 cut(s)	39, 77, 414
BssECI	CCNNGG	3 cut(s)	202, 427, 604
BssMI	GATC	3 cut(s)	300, 314, 342
BssT1I	CCWWGG	1 cut(s)	427
Bst2UI	CCWGG	1 cut(s)	605
Bst4CI	ACNGT	1 cut(s)	217
BstC8I	GCNNGC	2 cut(s)	78, 709
BstDEI	CTNAG	3 cut(s)	507, 533, 570
BstDSI	CCRYGG	1 cut(s)	427
BstENI	CCTNNNNNAGG	1 cut(s)	399
BstKTI	GATC	3 cut(s)	303, 317, 345
BstMBI	GATC	3 cut(s)	300, 314, 342
BstMWI	GCNNNNNNNGC	3 cut(s)	51, 147, 371
BstNI	CCWGG	1 cut(s)	605
BstNSI	RCATGY	1 cut(s)	658
BstSCI	CCNGG	2 cut(s)	201, 603
BstSFI	CTRYAG	1 cut(s)	231
BstX2I	RGATCY	2 cut(s)	314, 342
BstYI	RGATCY	2 cut(s)	314, 342
BtgI	CCRYGG	1 cut(s)	427
BtsIMutI	CAGTG	2 cut(s)	46, 70
Cac8I	GCNNGC	2 cut(s)	78, 709
CciI	TCATGA	1 cut(s)	737
Csp6I	GTAC	2 cut(s)	541, 577
CviAII	CATG	5 cut(s)	31, 221, 428, 655, 738
CviJI	RGCY	9 cut(s)	45, 54, 76, 80, 141, 150, 574, 613, 707
CviKI_1	RGCY	9 cut(s)	45, 54, 76, 80, 141, 150, 574, 613, 707
CviQI	GTAC	2 cut(s)	541, 577
DdeI	CTNAG	3 cut(s)	507, 533, 570
DpnI	GATC	3 cut(s)	302, 316, 344
DpnII	GATC	3 cut(s)	300, 314, 342
Eco130I	CCWWGG	1 cut(s)	427
EcoNI	CCTNNNNNAGG	1 cut(s)	399
EcoRII	CCWGG	1 cut(s)	603
EcoT14I	CCWWGG	1 cut(s)	427
ErhI	CCWWGG	1 cut(s)	427
FaeI	CATG	5 cut(s)	34, 224, 431, 658, 741
FalI	AAGNNNNNCTT	2 cut(s)	304, 336
FatI	CATG	5 cut(s)	30, 220, 427, 654, 737
GsuI	CTGGAG	1 cut(s)	431
HapII	CCGG	1 cut(s)	202
Hin1II	CATG	5 cut(s)	34, 224, 431, 658, 741
HinfI	GANTC	1 cut(s)	625
HpaII	CCGG	1 cut(s)	202
HphI	GGTGA	1 cut(s)	482
Hpy166II	GTNNAC	5 cut(s)	36, 118, 407, 529, 652
Hpy188I	TCNGA	5 cut(s)	165, 268, 328, 508, 680
Hpy188III	TCNNGA	3 cut(s)	278, 714, 738
Hpy8I	GTNNAC	5 cut(s)	36, 118, 407, 529, 652
HpyAV	CCTTC	2 cut(s)	152, 467
HpyCH4III	ACNGT	1 cut(s)	217
HpyCH4IV	ACGT	1 cut(s)	579
HpyCH4V	TGCA	6 cut(s)	14, 108, 242, 424, 585, 620
HpyF10VI	GCNNNNNNNGC	3 cut(s)	51, 147, 371
HpyF3I	CTNAG	3 cut(s)	507, 533, 570
HpySE526I	ACGT	1 cut(s)	579
Hsp92II	CATG	5 cut(s)	34, 224, 431, 658, 741
Kzo9I	GATC	3 cut(s)	300, 314, 342
LweI	GCATC	1 cut(s)	251
MaeII	ACGT	1 cut(s)	579
MalI	GATC	3 cut(s)	302, 316, 344
MboI	GATC	3 cut(s)	300, 314, 342
MboII	GAAGA	3 cut(s)	324, 442, 574
MflI	RGATCY	2 cut(s)	314, 342
MhlI	GDGCHC	1 cut(s)	515
MluCI	AATT	4 cut(s)	111, 122, 167, 683
MnlI	CCTC	3 cut(s)	30, 274, 731
MseI	TTAA	1 cut(s)	125
MslI	CAYNNNNRTG	2 cut(s)	374, 491
MspI	CCGG	1 cut(s)	202
MspR9I	CCNGG	2 cut(s)	203, 605
MvaI	CCWGG	1 cut(s)	605
MwoI	GCNNNNNNNGC	3 cut(s)	51, 147, 371
NciI	CCSGG	1 cut(s)	203
NcoI	CCATGG	1 cut(s)	427
NdeII	GATC	3 cut(s)	300, 314, 342
NlaIII	CATG	5 cut(s)	34, 224, 431, 658, 741
NspI	RCATGY	1 cut(s)	658
PagI	TCATGA	1 cut(s)	737
PciI	ACATGT	1 cut(s)	654
PfeI	GAWTC	1 cut(s)	625
PscI	ACATGT	1 cut(s)	654
Psp6I	CCWGG	1 cut(s)	603
PspGI	CCWGG	1 cut(s)	603
PsuI	RGATCY	2 cut(s)	314, 342
RsaI	GTAC	2 cut(s)	542, 578
RsaNI	GTAC	2 cut(s)	541, 577
RseI	CAYNNNNRTG	2 cut(s)	374, 491
SaqAI	TTAA	1 cut(s)	125
Sau3AI	GATC	3 cut(s)	300, 314, 342
ScrFI	CCNGG	2 cut(s)	203, 605
SduI	GDGCHC	1 cut(s)	515
SetI	ASST	9 cut(s)	133, 152, 255, 406, 534, 576, 582, 709, 723
SfaNI	GCATC	1 cut(s)	251
SfcI	CTRYAG	1 cut(s)	231
SmiMI	CAYNNNNRTG	2 cut(s)	374, 491
Sse9I	AATT	4 cut(s)	111, 122, 167, 683
SsiI	CCGC	1 cut(s)	236
StyD4I	CCNGG	2 cut(s)	201, 603
StyI	CCWWGG	1 cut(s)	427
TaaI	ACNGT	1 cut(s)	217
TaiI	ACGT	1 cut(s)	582
TasI	AATT	4 cut(s)	111, 122, 167, 683
TfiI	GAWTC	1 cut(s)	625
Tru1I	TTAA	1 cut(s)	125
Tru9I	TTAA	1 cut(s)	125
TscAI	CASTG	2 cut(s)	46, 77
TspDTI	ATGAA	5 cut(s)	19, 134, 209, 625, 659
TspGWI	ACGGA	1 cut(s)	680
TspRI	CASTG	2 cut(s)	46, 77
XagI	CCTNNNNNAGG	1 cut(s)	399
XceI	RCATGY	1 cut(s)	658

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.