Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr03

Orthogroup ID

OG0004387

Physical Location & Seq

Genomic Coordinates Forward (+)

3708859 .. 3713047

Gene Structure 4189 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD03G1046000.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 813 bp

ATGGTGGGATTTTCTTTTCCCTTTGGTTTAGTGTCCATATCTGGCTATCTTGCCCCTGAGAAAGAATTTCACTTGCTGGCATCTGTCCTCTTTGGCATCTTTCTCTGCGATATTGTTTACAGATTAACGCGCCTTATTAGCCTTCTCACCGTTGAGGGATATGACAAACTCAGCAAAGCAGAAAAAGTTGAATGGAACAACCGGGGGTTCTCAACTGTTCATGCTATTGCCGTAGCATTTGCATCATTTTACCTTGTAGTGTTGTCAGATACTTTTCATGAGGATCATCGTGATGAGCCAATCATTAGCAGAAGATCTACCTTTTCAAATACAACATTGGGGATCTCCATCGGATATTTTCTGTCAGACTTGGGAATGATTTTGTGGTATTTTCCTGCTTTAGGTGGACTGGAGTATGTTTTGCATCATGCACTATCTATGTACTCGATCTTTCTCTCCCTTTTAAGTGGAAAAGGCCACATTTACATACTAATGGTTCTGTTCTCTGAGAGCACGACTCCTTTCGTAAACATGAGATGGTACTTGGATGTTGCTGGTAAGAAGAACTCTAACCTGTACGTCGTCAATGGCGCAGCATTGTTCCTGGGGTGGCTGGTGGCAAGGATTCTTTTGTTCATTTACTTTTTCGTCCACTTGTTTATCCATTTCAATCAAGTCAAGACAATTTTCCCTCTGGGATTTTACAGCTTGTTCCTGGTGGCTCCAATGCTGGCTACAATGAATCTCATTTGGTTTTGGAAGATCACCAAAGGTTTGATCAAAACTGTTTCCAAGGCCAAACACAGTCAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006950 GO:0006970 GO:0008150 GO:0009628 GO:0009651 GO:0009987 GO:0019725 GO:0042592 GO:0043167 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0045454 GO:0046872 GO:0046914 GO:0050789 GO:0050794 GO:0050896 GO:0050897 GO:0065007 GO:0065008

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

TRAM_LAG1_CLN8

Protein Analysis

271

Amino Acids

30.76

Weight (kDa)

9.18

Isoelectric Point (pI)

29.03

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
TRAM_LAG1_CLN8	PF03798	64 - 257	6.4e-33	TLC domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004387)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G10360 AT4G10360 AT4G10360
fragaria_vesca	FvH4_3g41280 FvH4_3g41280 FvH4_3g41280 FvH4_3g41280 FvH4_3g41280 FvH4_3g41280 FvH4_3g41280 FvH4_3g41280 FvH4_3g41280
malus_domestica	MD03G1046000.v1.1 MD11G1048300.v1.1
prunus_persica	Prupe.6G037300_v2.0.a1 Prupe.6G037300_v2.0.a1 Prupe.6G037300_v2.0.a1 Prupe.6G037300_v2.0.a1 Prupe.6G037300_v2.0.a1 Prupe.6G037300_v2.0.a1
pyrus_communis	pycom03g03620 pycom11g03940
rosa_chinensis	RchiOBHm_Chr5g0074081
rosa_laevigata	RLG00000036452
rosa_multiflora	Rmu_sc0000573.1_g000071
rosa_roxburghii	Rroxscaffold_1G00007320
rosa_rugosa	Rorug05G0429100
rosa_samantha	Rh5AG486700 Rh5BG507000 Rh5CG530500 Rh5DG519400
rosa_wichuraiana	Rw5G045170

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	130
AclWI	GGATC	2 cut(s)	291, 350
AcsI	RAATTY	1 cut(s)	65
AfaI	GTAC	3 cut(s)	443, 542, 578
AfiI	CCNNNNNNNGG	1 cut(s)	401
AgsI	TTSAA	3 cut(s)	191, 327, 670
AjnI	CCWGG	2 cut(s)	603, 714
AluBI	AGCT	1 cut(s)	708
AluI	AGCT	1 cut(s)	708
Alw21I	GWGCWC	1 cut(s)	515
AlwI	GGATC	2 cut(s)	291, 350
AoxI	GGCC	2 cut(s)	475, 795
ApeKI	GCWGC	1 cut(s)	593
ApoI	RAATTY	1 cut(s)	65
AspLEI	GCGC	2 cut(s)	132, 593
AsuC2I	CCSGG	1 cut(s)	203
AsuHPI	GGTGA	2 cut(s)	139, 757
Bbv12I	GWGCWC	1 cut(s)	515
BbvI	GCAGC	1 cut(s)	605
BccI	CCATC	2 cut(s)	356, 531
BceAI	ACGGC	1 cut(s)	215
BciT130I	CCWGG	2 cut(s)	605, 716
BclI	TGATCA	1 cut(s)	777
BcnI	CCSGG	1 cut(s)	203
BglII	AGATCT	1 cut(s)	314
BisI	GCNGC	1 cut(s)	594
BlsI	GCNGC	1 cut(s)	595
Bme1390I	CCNGG	3 cut(s)	203, 605, 716
BmiI	GGNNCC	1 cut(s)	723
BmrFI	CCNGG	3 cut(s)	203, 605, 716
BmsI	GCATC	4 cut(s)	89, 105, 251, 433
BplI	GAGNNNNNCTC	2 cut(s)	502, 534
BpmI	CTGGAG	1 cut(s)	431
BpuMI	CCSGG	1 cut(s)	203
BsaBI	GATNNNNATC	1 cut(s)	347
BsaJI	CCNNGG	3 cut(s)	202, 604, 792
Bsc4I	CCNNNNNNNGG	1 cut(s)	401
Bse1I	ACTGG	1 cut(s)	414
Bse8I	GATNNNNATC	1 cut(s)	347
BseBI	CCWGG	2 cut(s)	605, 716
BseDI	CCNNGG	3 cut(s)	202, 604, 792
BseGI	GGATG	1 cut(s)	553
BseJI	GATNNNNATC	1 cut(s)	347
BseLI	CCNNNNNNNGG	1 cut(s)	401
BseMII	CTCAG	3 cut(s)	48, 184, 498
BseNI	ACTGG	1 cut(s)	414
BseXI	GCAGC	1 cut(s)	605
Bsh1236I	CGCG	1 cut(s)	130
BshFI	GGCC	2 cut(s)	477, 797
BsiHKAI	GWGCWC	1 cut(s)	515
BsiSI	CCGG	1 cut(s)	202
BslI	CCNNNNNNNGG	1 cut(s)	401
BsnI	GGCC	2 cut(s)	477, 797
Bsp1286I	GDGCHC	1 cut(s)	515
Bsp143I	GATC	6 cut(s)	283, 314, 342, 447, 762, 777
BspANI	GGCC	2 cut(s)	477, 797
BspCNI	CTCAG	3 cut(s)	49, 183, 499
BspFNI	CGCG	1 cut(s)	130
BspHI	TCATGA	1 cut(s)	277
BspLI	GGNNCC	1 cut(s)	723
BspPI	GGATC	2 cut(s)	291, 350
BsrI	ACTGG	1 cut(s)	414
BssECI	CCNNGG	3 cut(s)	202, 604, 792
BssMI	GATC	6 cut(s)	283, 314, 342, 447, 762, 777
BssT1I	CCWWGG	1 cut(s)	792
Bst2UI	CCWGG	2 cut(s)	605, 716
Bst4CI	ACNGT	4 cut(s)	151, 217, 787, 806
BstC8I	GCNNGC	2 cut(s)	78, 732
BstDEI	CTNAG	3 cut(s)	57, 170, 507
BstENI	CCTNNNNNAGG	1 cut(s)	399
BstF5I	GGATG	1 cut(s)	553
BstFNI	CGCG	1 cut(s)	130
BstHHI	GCGC	2 cut(s)	132, 593
BstKTI	GATC	6 cut(s)	286, 317, 345, 450, 765, 780
BstMBI	GATC	6 cut(s)	283, 314, 342, 447, 762, 777
BstMWI	GCNNNNNNNGC	1 cut(s)	138
BstNI	CCWGG	2 cut(s)	605, 716
BstSCI	CCNGG	3 cut(s)	201, 603, 714
BstUI	CGCG	1 cut(s)	130
BstV1I	GCAGC	1 cut(s)	605
BstX2I	RGATCY	2 cut(s)	314, 342
BstYI	RGATCY	2 cut(s)	314, 342
BsuRI	GGCC	2 cut(s)	477, 797
BtsCI	GGATG	1 cut(s)	553
Cac8I	GCNNGC	2 cut(s)	78, 732
CciI	TCATGA	1 cut(s)	277
CfoI	GCGC	2 cut(s)	132, 593
Csp6I	GTAC	3 cut(s)	442, 541, 577
CviAII	CATG	4 cut(s)	221, 278, 428, 532
CviJI	RGCY	9 cut(s)	45, 141, 298, 477, 613, 708, 722, 734, 797
CviKI_1	RGCY	9 cut(s)	45, 141, 298, 477, 613, 708, 722, 734, 797
CviQI	GTAC	3 cut(s)	442, 541, 577
DdeI	CTNAG	3 cut(s)	57, 170, 507
DpnI	GATC	6 cut(s)	285, 316, 344, 449, 764, 779
DpnII	GATC	6 cut(s)	283, 314, 342, 447, 762, 777
Eco130I	CCWWGG	1 cut(s)	792
EcoNI	CCTNNNNNAGG	1 cut(s)	399
EcoRII	CCWGG	2 cut(s)	603, 714
EcoT14I	CCWWGG	1 cut(s)	792
ErhI	CCWWGG	1 cut(s)	792
FaeI	CATG	4 cut(s)	224, 281, 431, 535
FaiI	YATR	9 cut(s)	38, 162, 222, 279, 417, 429, 440, 488, 533
FatI	CATG	4 cut(s)	220, 277, 427, 531
FbaI	TGATCA	1 cut(s)	777
Fnu4HI	GCNGC	1 cut(s)	594
FokI	GGATG	1 cut(s)	560
Fsp4HI	GCNGC	1 cut(s)	594
GlaI	GCGC	2 cut(s)	131, 592
GluI	GCNGC	1 cut(s)	594
GsuI	CTGGAG	1 cut(s)	431
HaeIII	GGCC	2 cut(s)	477, 797
HapII	CCGG	1 cut(s)	202
HhaI	GCGC	2 cut(s)	132, 593
Hin1II	CATG	4 cut(s)	224, 281, 431, 535
Hin6I	GCGC	2 cut(s)	130, 591
HinP1I	GCGC	2 cut(s)	130, 591
HinfI	GANTC	3 cut(s)	517, 625, 742
HpaII	CCGG	1 cut(s)	202
HphI	GGTGA	2 cut(s)	139, 757
Hpy166II	GTNNAC	4 cut(s)	118, 407, 529, 652
Hpy188I	TCNGA	4 cut(s)	268, 353, 367, 508
Hpy188III	TCNNGA	3 cut(s)	278, 290, 679
Hpy8I	GTNNAC	4 cut(s)	118, 407, 529, 652
Hpy99I	CGWCG	1 cut(s)	584
HpyAV	CCTTC	1 cut(s)	152
HpyCH4III	ACNGT	4 cut(s)	151, 217, 787, 806
HpyCH4IV	ACGT	1 cut(s)	579
HpyCH4V	TGCA	3 cut(s)	242, 424, 431
HpyF10VI	GCNNNNNNNGC	1 cut(s)	138
HpyF3I	CTNAG	3 cut(s)	57, 170, 507
HpySE526I	ACGT	1 cut(s)	579
Hsp92II	CATG	4 cut(s)	224, 281, 431, 535
HspAI	GCGC	2 cut(s)	130, 591
Ksp22I	TGATCA	1 cut(s)	777
Kzo9I	GATC	6 cut(s)	283, 314, 342, 447, 762, 777
LmnI	GCTCC	1 cut(s)	727
Lsp1109I	GCAGC	1 cut(s)	605
LweI	GCATC	4 cut(s)	89, 105, 251, 433
MaeII	ACGT	1 cut(s)	579
MalI	GATC	6 cut(s)	285, 316, 344, 449, 764, 779
MboI	GATC	6 cut(s)	283, 314, 342, 447, 762, 777
MboII	GAAGA	3 cut(s)	324, 574, 772
MflI	RGATCY	2 cut(s)	314, 342
MhlI	GDGCHC	1 cut(s)	515
MluCI	AATT	2 cut(s)	65, 684
MlyI	GAGTC	1 cut(s)	511
MnlI	CCTC	4 cut(s)	98, 148, 274, 702
MseI	TTAA	2 cut(s)	125, 464
MslI	CAYNNNNRTG	2 cut(s)	291, 491
MspI	CCGG	1 cut(s)	202
MspR9I	CCNGG	3 cut(s)	203, 605, 716
MvaI	CCWGG	2 cut(s)	605, 716
MvnI	CGCG	1 cut(s)	130
MwoI	GCNNNNNNNGC	1 cut(s)	138
NciI	CCSGG	1 cut(s)	203
NdeII	GATC	6 cut(s)	283, 314, 342, 447, 762, 777
NlaIII	CATG	4 cut(s)	224, 281, 431, 535
NlaIV	GGNNCC	1 cut(s)	723
PagI	TCATGA	1 cut(s)	277
PfeI	GAWTC	2 cut(s)	625, 742
PkrI	GCNGC	1 cut(s)	595
PleI	GAGTC	1 cut(s)	511
PpsI	GAGTC	1 cut(s)	511
Psp6I	CCWGG	2 cut(s)	603, 714
PspGI	CCWGG	2 cut(s)	603, 714
PspN4I	GGNNCC	1 cut(s)	723
PsuI	RGATCY	2 cut(s)	314, 342
RsaI	GTAC	3 cut(s)	443, 542, 578
RsaNI	GTAC	3 cut(s)	442, 541, 577
RseI	CAYNNNNRTG	2 cut(s)	291, 491
SaqAI	TTAA	2 cut(s)	125, 464
SatI	GCNGC	1 cut(s)	594
Sau3AI	GATC	6 cut(s)	283, 314, 342, 447, 762, 777
SchI	GAGTC	1 cut(s)	511
ScrFI	CCNGG	3 cut(s)	203, 605, 716
SduI	GDGCHC	1 cut(s)	515
SetI	ASST	7 cut(s)	255, 323, 406, 576, 582, 710, 775
SfaNI	GCATC	4 cut(s)	89, 105, 251, 433
SmiMI	CAYNNNNRTG	2 cut(s)	291, 491
Sse9I	AATT	2 cut(s)	65, 684
StyD4I	CCNGG	3 cut(s)	201, 603, 714
StyI	CCWWGG	1 cut(s)	792
TaaI	ACNGT	4 cut(s)	151, 217, 787, 806
TaiI	ACGT	1 cut(s)	582
TaqI	TCGA	1 cut(s)	446
TasI	AATT	2 cut(s)	65, 684
TatI	WGTACW	1 cut(s)	441
TfiI	GAWTC	2 cut(s)	625, 742
Tru1I	TTAA	2 cut(s)	125, 464
Tru9I	TTAA	2 cut(s)	125, 464
TseI	GCWGC	1 cut(s)	593
TspDTI	ATGAA	4 cut(s)	209, 266, 625, 755
XagI	CCTNNNNNAGG	1 cut(s)	399
XapI	RAATTY	1 cut(s)	65

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.