RLG00000036452

Transmembrane protein 56-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr7
OG0004387
Physical Location & Seq
Reverse (-)
80798878 .. 80803726
4849 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000036452

Sequence Viewer

Length: 1308 bp
ATGAATCGCCGTGGCGGAGGAGGACTTGGGAGTGGAACCGCCGTCATCGTTGGTGGAGAAGTCGTTGACTTCGAATTCGGCGCTGTGATCCGTGGAGAAGTGGTGGCTGGAGGAGGCGAAGGAGCCTGCCAGTCGTCGAGGTCGACTCCGATCTGGACCAAGTCGTCGAGATCGATTCCTCTGGTGACGACGCCGTGGTGGGCGGCCCGAGTCTGGAGGAGAGAGGTAGACTGCCTGGGTGGAGCGCCGGAGCCTGAGACTGCTTGGGTCGAGCGCCGGAGCCTGAGACTGCCTGGGTCGAGCGCCGGAGCAGGAGACGGCCTGACTCGTGCGCCGGAGCCGGAGAAGGAAATTTTGCTTGCCTTTGAATTGTTTGATTTGAAGGGTTTAATCCAACAAGGGACTATGGTGGGATTTGCATATCCTCTTGGTTTTATGTCCACCAGTGGCTATGTCAGCCCAAACAAAGAGTTTCACTGGCTGGCTTCTGCCCTTTTTGGTATGCTTCTCTGCAAAATTGTTTACAAATTAACAGGTCTTATTAGCCTTCATAGCTTCAAAGAATATCAGAAATTGAGCAAAGCAGAAAAAGTTGAATGGAACAACCGGGGGTTCTCAACTGTTCATGCTATTGCTGTAGCAGTTGCATCTTTTTACCTTATACTCTTATCAGATACATTTCATGAGGGTTATAGTGATGAGCTGATCGTTAGTAGAAGATCTACTTTTTCAGATACAACATTGGGGATCTCCATTGGTTATTTTCTGGCAGACATAGCAATGATTTTTTGGCATTTTCCTGCTTTAGGTGGACTGGAGTATGTTTTGCACCATGGACTATCTATGTTCTCAATCTTCCTTTCCCTTGTAAGTGGTGAAGGGCAGATTTACATACTAATGGTTTTGTTCTCTGAGAGCACAACTCCTTTTGTAAACCTAAGATGGTACTTGGATATTGCTGGTAAGAAGAACTCTAAGCTGTACGTCTGCAATGGTGTAGCATTGTTCCTGGGGTGGCTGGTTGCAAGGATTCTTTTGTTCATTTACTTTTTCATCCACATGTTTTTCCATTTTCATCAAGTCAAGACAATTTTTCCATTGGGATTTTACAGCTTGCTCACGATACCTCCTGTGTTGGCAATAATGAATCTGTTTTGGTTTTGGAAGATTGCCAAAGTGTACATTGTCAAATTTAAAGATTTGGTTTTGCAACTCTCAAAGGGACAAAAGGGGGAATGCATGGGTGTGAGTTTCCAAGAGAAGAGAACAAACCCTGATGTGGGATGTATGATGAGTCATCTTTTATGA

Protein Analysis

436

Amino Acids

48.44

Weight (kDa)

8.75

Isoelectric Point (pI)

37.53

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TRAM_LAG1_CLN8 PF03798 199 - 392 4.9e-34 TLC domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 163
AccI GTMKAC 2 cut(s) 143, 228
AciI CCGC 3 cut(s) 15, 39, 203
AclWI GGATC 2 cut(s) 82, 755
AcsI RAATTY 3 cut(s) 74, 351, 1190
AcyI GRCGYC 1 cut(s) 191
AfaI GTAC 3 cut(s) 947, 983, 1181
AfiI CCNNNNNNNGG 4 cut(s) 213, 806, 1279, 1280
AflIII ACRYGT 1 cut(s) 1059
AgsI TTSAA 4 cut(s) 368, 382, 559, 596
AjnI CCWGG 3 cut(s) 234, 292, 1008
AluBI AGCT 4 cut(s) 555, 703, 979, 1113
AluI AGCT 4 cut(s) 555, 703, 979, 1113
Alw21I GWGCWC 1 cut(s) 920
Alw26I GTCTC 3 cut(s) 251, 280, 309
AlwI GGATC 2 cut(s) 82, 755
Ama87I CYCGRG 1 cut(s) 207
AoxI GGCC 2 cut(s) 204, 319
ApoI RAATTY 3 cut(s) 74, 351, 1190
ArsI GACNNNNNNTTYG 2 cut(s) 59, 91
AspLEI GCGC 5 cut(s) 83, 247, 276, 305, 334
AspS9I GGNCC 2 cut(s) 156, 205
AsuC2I CCSGG 1 cut(s) 608
AsuHPI GGTGA 2 cut(s) 196, 887
AsuII TTCGAA 1 cut(s) 72
AvaI CYCGRG 1 cut(s) 207
AvaII GGWCC 1 cut(s) 156
BauI CACGAG 1 cut(s) 327
Bbv12I GWGCWC 1 cut(s) 920
BccI CCATC 1 cut(s) 936
BceAI ACGGC 3 cut(s) 26, 178, 334
BciT130I CCWGG 3 cut(s) 236, 294, 1010
BcnI CCSGG 1 cut(s) 608
BcoDI GTCTC 3 cut(s) 251, 280, 309
BfmI CTRYAG 1 cut(s) 636
BfoI RGCGCY 4 cut(s) 84, 248, 277, 306
BglII AGATCT 1 cut(s) 719
BisI GCNGC 1 cut(s) 204
BlsI GCNGC 1 cut(s) 205
Bme1390I CCNGG 4 cut(s) 236, 294, 608, 1010
Bme18I GGWCC 1 cut(s) 156
BmeT110I CYCGRG 1 cut(s) 207
BmgT120I GGNCC 2 cut(s) 156, 205
BmiI GGNNCC 5 cut(s) 37, 124, 252, 281, 339
BmrFI CCNGG 4 cut(s) 236, 294, 608, 1010
BmsI GCATC 1 cut(s) 656
BplI GAGNNNNNCTC 4 cut(s) 130, 162, 907, 939
BpmI CTGGAG 3 cut(s) 129, 235, 836
Bpu14I TTCGAA 1 cut(s) 72
BpuMI CCSGG 1 cut(s) 608
Bsa29I ATCGAT 1 cut(s) 173
BsaHI GRCGYC 1 cut(s) 191
BsaJI CCNNGG 8 cut(s) 10, 91, 194, 235, 293, 607, 832, 1009
BsaXI ACNNNNNCTCC 6 cut(s) 48, 78, 87, 117, 1111, 1141
Bsc4I CCNNNNNNNGG 4 cut(s) 213, 806, 1279, 1280
Bse1I ACTGG 4 cut(s) 130, 444, 482, 819
Bse3DI GCAATG 2 cut(s) 786, 997
BseBI CCWGG 3 cut(s) 236, 294, 1010
BseCI ATCGAT 1 cut(s) 173
BseDI CCNNGG 8 cut(s) 10, 91, 194, 235, 293, 607, 832, 1009
BseGI GGATG 2 cut(s) 1053, 1289
BseLI CCNNNNNNNGG 4 cut(s) 213, 806, 1279, 1280
BseMI GCAATG 2 cut(s) 786, 997
BseMII CTCAG 3 cut(s) 246, 275, 903
BseNI ACTGG 4 cut(s) 130, 444, 482, 819
BseRI GAGGAG 3 cut(s) 33, 126, 232
BshFI GGCC 2 cut(s) 206, 321
BshVI ATCGAT 1 cut(s) 173
BsiHKAI GWGCWC 1 cut(s) 920
BsiHKCI CYCGRG 1 cut(s) 207
BsiSI CCGG 6 cut(s) 248, 277, 306, 335, 341, 607
BslFI GGGAC 2 cut(s) 415, 1236
BslI CCNNNNNNNGG 4 cut(s) 213, 806, 1279, 1280
BsmAI GTCTC 3 cut(s) 251, 280, 309
BsmBI CGTCTC 1 cut(s) 309
BsmFI GGGAC 2 cut(s) 415, 1236
BsmI GAATGC 1 cut(s) 1241
BsnI GGCC 2 cut(s) 206, 321
BsoBI CYCGRG 1 cut(s) 207
Bsp119I TTCGAA 1 cut(s) 72
Bsp1286I GDGCHC 1 cut(s) 920
Bsp1407I TGTACA 1 cut(s) 1179
Bsp143I GATC 6 cut(s) 87, 150, 170, 705, 719, 747
Bsp19I CCATGG 1 cut(s) 832
BspACI CCGC 3 cut(s) 15, 39, 203
BspANI GGCC 2 cut(s) 206, 321
BspCNI CTCAG 3 cut(s) 247, 276, 904
BspDI ATCGAT 1 cut(s) 173
BspHI TCATGA 1 cut(s) 682
BspLI GGNNCC 5 cut(s) 37, 124, 252, 281, 339
BspPI GGATC 2 cut(s) 82, 755
BspT104I TTCGAA 1 cut(s) 72
BsrDI GCAATG 2 cut(s) 786, 997
BsrGI TGTACA 1 cut(s) 1179
BsrI ACTGG 4 cut(s) 130, 444, 482, 819
BssECI CCNNGG 8 cut(s) 10, 91, 194, 235, 293, 607, 832, 1009
BssMI GATC 6 cut(s) 87, 150, 170, 705, 719, 747
BssNI GRCGYC 1 cut(s) 191
BssSI CACGAG 1 cut(s) 327
BssT1I CCWWGG 1 cut(s) 832
Bst2BI CACGAG 1 cut(s) 327
Bst2UI CCWGG 3 cut(s) 236, 294, 1010
Bst4CI ACNGT 1 cut(s) 622
Bst6I CTCTTC 1 cut(s) 1256
BstACI GRCGYC 1 cut(s) 191
BstAUI TGTACA 1 cut(s) 1179
BstBI TTCGAA 1 cut(s) 72
BstC8I GCNNGC 4 cut(s) 127, 360, 483, 1115
BstDEI CTNAG 5 cut(s) 255, 284, 912, 938, 975
BstDSI CCRYGG 4 cut(s) 10, 91, 194, 832
BstENI CCTNNNNNAGG 1 cut(s) 804
BstF5I GGATG 2 cut(s) 1053, 1289
BstH2I RGCGCY 4 cut(s) 84, 248, 277, 306
BstHHI GCGC 5 cut(s) 83, 247, 276, 305, 334
BstKTI GATC 6 cut(s) 90, 153, 173, 708, 722, 750
BstMAI GTCTC 3 cut(s) 251, 280, 309
BstMBI GATC 6 cut(s) 87, 150, 170, 705, 719, 747
BstMWI GCNNNNNNNGC 3 cut(s) 456, 552, 776
BstNI CCWGG 3 cut(s) 236, 294, 1010
BstNSI RCATGY 1 cut(s) 1063
BstSCI CCNGG 4 cut(s) 234, 292, 606, 1008
BstSFI CTRYAG 1 cut(s) 636
BstX2I RGATCY 2 cut(s) 719, 747
BstYI RGATCY 2 cut(s) 719, 747
Bsu15I ATCGAT 1 cut(s) 173
BsuRI GGCC 2 cut(s) 206, 321
BsuTUI ATCGAT 1 cut(s) 173
BtgI CCRYGG 4 cut(s) 10, 91, 194, 832
BtsCI GGATG 2 cut(s) 1053, 1289
BtsIMutI CAGTG 2 cut(s) 451, 475
Cac8I GCNNGC 4 cut(s) 127, 360, 483, 1115
CciI TCATGA 1 cut(s) 682
CfoI GCGC 5 cut(s) 83, 247, 276, 305, 334
Cfr13I GGNCC 2 cut(s) 156, 205
ClaI ATCGAT 1 cut(s) 173
CseI GACGC 1 cut(s) 199
Csp6I GTAC 3 cut(s) 946, 982, 1180
CviAII CATG 5 cut(s) 626, 683, 833, 1060, 1240
CviQI GTAC 3 cut(s) 946, 982, 1180
DdeI CTNAG 5 cut(s) 255, 284, 912, 938, 975
DpnI GATC 6 cut(s) 89, 152, 172, 707, 721, 749
DpnII GATC 6 cut(s) 87, 150, 170, 705, 719, 747
DraI TTTAAA 1 cut(s) 1195
DrdI GACNNNNNNGTC 1 cut(s) 163
DseDI GACNNNNNNGTC 1 cut(s) 163
Eam1104I CTCTTC 1 cut(s) 1256
EarI CTCTTC 1 cut(s) 1256
EciI GGCGGA 1 cut(s) 30
Eco130I CCWWGG 1 cut(s) 832
Eco47I GGWCC 1 cut(s) 156
Eco88I CYCGRG 1 cut(s) 207
EcoNI CCTNNNNNAGG 1 cut(s) 804
EcoRI GAATTC 1 cut(s) 74
EcoRII CCWGG 3 cut(s) 234, 292, 1008
EcoT14I CCWWGG 1 cut(s) 832
EcoT22I ATGCAT 1 cut(s) 1241
ErhI CCWWGG 1 cut(s) 832
Esp3I CGTCTC 1 cut(s) 309
FaeI CATG 5 cut(s) 629, 686, 836, 1063, 1243
FalI AAGNNNNNCTT 2 cut(s) 709, 741
FaqI GGGAC 2 cut(s) 415, 1236
FatI CATG 5 cut(s) 625, 682, 832, 1059, 1239
FblI GTMKAC 2 cut(s) 143, 228
Fnu4HI GCNGC 1 cut(s) 204
FokI GGATG 2 cut(s) 1040, 1296
Fsp4HI GCNGC 1 cut(s) 204
GlaI GCGC 5 cut(s) 82, 246, 275, 304, 333
GluI GCNGC 1 cut(s) 204
GsuI CTGGAG 3 cut(s) 129, 235, 836
HaeII RGCGCY 4 cut(s) 84, 248, 277, 306
HaeIII GGCC 2 cut(s) 206, 321
HapII CCGG 6 cut(s) 248, 277, 306, 335, 341, 607
HgaI GACGC 1 cut(s) 199
HhaI GCGC 5 cut(s) 83, 247, 276, 305, 334
Hin1I GRCGYC 1 cut(s) 191
Hin1II CATG 5 cut(s) 629, 686, 836, 1063, 1243
Hin6I GCGC 5 cut(s) 81, 245, 274, 303, 332
HinP1I GCGC 5 cut(s) 81, 245, 274, 303, 332
HincII GTYRAC 2 cut(s) 67, 144
HindII GTYRAC 2 cut(s) 67, 144
HinfI GANTC 8 cut(s) 4, 145, 175, 210, 325, 1030, 1147, 1294
HpaII CCGG 6 cut(s) 248, 277, 306, 335, 341, 607
HphI GGTGA 2 cut(s) 196, 887
Hpy166II GTNNAC 8 cut(s) 67, 144, 229, 441, 523, 812, 934, 1180
Hpy188I TCNGA 5 cut(s) 150, 570, 673, 733, 913
Hpy188III TCNNGA 6 cut(s) 154, 168, 214, 683, 1084, 1120
Hpy8I GTNNAC 8 cut(s) 67, 144, 229, 441, 523, 812, 934, 1180
Hpy99I CGWCG 3 cut(s) 139, 169, 193
HpyAV CCTTC 5 cut(s) 113, 340, 376, 557, 872
HpyCH4III ACNGT 1 cut(s) 622
HpyCH4IV ACGT 1 cut(s) 984
HpyCH4V TGCA 8 cut(s) 419, 513, 647, 829, 990, 1025, 1210, 1239
HpyF10VI GCNNNNNNNGC 3 cut(s) 456, 552, 776
HpyF3I CTNAG 5 cut(s) 255, 284, 912, 938, 975
HpySE526I ACGT 1 cut(s) 984
Hsp92I GRCGYC 1 cut(s) 191
Hsp92II CATG 5 cut(s) 629, 686, 836, 1063, 1243
HspAI GCGC 5 cut(s) 81, 245, 274, 303, 332
Kzo9I GATC 6 cut(s) 87, 150, 170, 705, 719, 747
LmnI GCTCC 6 cut(s) 122, 242, 250, 279, 308, 337
LweI GCATC 1 cut(s) 656
MaeII ACGT 1 cut(s) 984
MaeIII GTNAC 1 cut(s) 184
MalI GATC 6 cut(s) 89, 152, 172, 707, 721, 749
MboI GATC 6 cut(s) 87, 150, 170, 705, 719, 747
MboII GAAGA 5 cut(s) 729, 847, 979, 1177, 1273
MflI RGATCY 2 cut(s) 719, 747
MhlI GDGCHC 1 cut(s) 920
MluCI AATT 8 cut(s) 74, 351, 368, 516, 527, 572, 1089, 1190
MlyI GAGTC 4 cut(s) 139, 219, 319, 1303
MmeI TCCRAC 1 cut(s) 418
Mph1103I ATGCAT 1 cut(s) 1241
MseI TTAA 3 cut(s) 389, 530, 1194
MslI CAYNNNNRTG 4 cut(s) 779, 896, 1058, 1244
MspI CCGG 6 cut(s) 248, 277, 306, 335, 341, 607
MspR9I CCNGG 4 cut(s) 236, 294, 608, 1010
Mva1269I GAATGC 1 cut(s) 1241
MvaI CCWGG 3 cut(s) 236, 294, 1010
MwoI GCNNNNNNNGC 3 cut(s) 456, 552, 776
NciI CCSGG 1 cut(s) 608
NcoI CCATGG 1 cut(s) 832
NdeII GATC 6 cut(s) 87, 150, 170, 705, 719, 747
NlaIII CATG 5 cut(s) 629, 686, 836, 1063, 1243
NlaIV GGNNCC 5 cut(s) 37, 124, 252, 281, 339
NmuCI GTSAC 1 cut(s) 184
NsiI ATGCAT 1 cut(s) 1241
NspI RCATGY 1 cut(s) 1063
NspV TTCGAA 1 cut(s) 72
PagI TCATGA 1 cut(s) 682
PciI ACATGT 1 cut(s) 1059
PcsI WCGNNNNNNNCGW 3 cut(s) 69, 140, 170
PctI GAATGC 1 cut(s) 1241
PfeI GAWTC 4 cut(s) 4, 175, 1030, 1147
PflFI GACNNNGTC 1 cut(s) 160
PkrI GCNGC 1 cut(s) 205
PleI GAGTC 4 cut(s) 139, 218, 319, 1302
PpsI GAGTC 4 cut(s) 139, 218, 319, 1302
PscI ACATGT 1 cut(s) 1059
Psp6I CCWGG 3 cut(s) 234, 292, 1008
PspGI CCWGG 3 cut(s) 234, 292, 1008
PspN4I GGNNCC 5 cut(s) 37, 124, 252, 281, 339
PspPI GGNCC 2 cut(s) 156, 205
PsuI RGATCY 2 cut(s) 719, 747
PsyI GACNNNGTC 1 cut(s) 160
RsaI GTAC 3 cut(s) 947, 983, 1181
RsaNI GTAC 3 cut(s) 946, 982, 1180
RseI CAYNNNNRTG 4 cut(s) 779, 896, 1058, 1244
SalI GTCGAC 1 cut(s) 142
SaqAI TTAA 3 cut(s) 389, 530, 1194
SatI GCNGC 1 cut(s) 204
Sau3AI GATC 6 cut(s) 87, 150, 170, 705, 719, 747
Sau96I GGNCC 2 cut(s) 156, 205
SchI GAGTC 4 cut(s) 139, 219, 319, 1303
ScrFI CCNGG 4 cut(s) 236, 294, 608, 1010
SduI GDGCHC 1 cut(s) 920
SfaNI GCATC 1 cut(s) 656
SfcI CTRYAG 1 cut(s) 636
SfuI TTCGAA 1 cut(s) 72
SinI GGWCC 1 cut(s) 156
SmiMI CAYNNNNRTG 4 cut(s) 779, 896, 1058, 1244
Sse9I AATT 8 cut(s) 74, 351, 368, 516, 527, 572, 1089, 1190
SsiI CCGC 3 cut(s) 15, 39, 203
StyD4I CCNGG 4 cut(s) 234, 292, 606, 1008
StyI CCWWGG 1 cut(s) 832
TaaI ACNGT 1 cut(s) 622
TaiI ACGT 1 cut(s) 987
TaqI TCGA 7 cut(s) 72, 137, 143, 167, 173, 270, 299
TasI AATT 8 cut(s) 74, 351, 368, 516, 527, 572, 1089, 1190
TatI WGTACW 1 cut(s) 1179
TauI GCSGC 1 cut(s) 206
TfiI GAWTC 4 cut(s) 4, 175, 1030, 1147
Tru1I TTAA 3 cut(s) 389, 530, 1194
Tru9I TTAA 3 cut(s) 389, 530, 1194
TscAI CASTG 2 cut(s) 451, 482
TseFI GTSAC 1 cut(s) 184
Tsp45I GTSAC 1 cut(s) 184
TspDTI ATGAA 8 cut(s) 17, 539, 614, 671, 1030, 1042, 1064, 1160
TspGWI ACGGA 1 cut(s) 80
TspRI CASTG 2 cut(s) 451, 482
Tth111I GACNNNGTC 1 cut(s) 160
VpaK11BI GGWCC 1 cut(s) 156
XagI CCTNNNNNAGG 1 cut(s) 804
XapI RAATTY 3 cut(s) 74, 351, 1190
XceI RCATGY 1 cut(s) 1063
XmiI GTMKAC 2 cut(s) 143, 228
Zsp2I ATGCAT 1 cut(s) 1241
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.