Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp06

Orthogroup ID

OG0004387

Physical Location & Seq

Genomic Coordinates Forward (+)

2818043 .. 2822293

Gene Structure 4251 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.6G037300.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 864 bp

ATGCTTCAAGAATCAAAACCCACCACAGGCCAGGAAACCGTACAAAGTAGAAACACTGAACAAAATTTTACCTTACAGAGAAATTACAGGCGCACAATCAAACCAACCCAATATCCGCAGAGCTCACAGCTCTTCACAGCACTTGAAGACTTCAGCTTTTCTCTGGTTTACAGATTAACACGTCTTATCAGCCTTCTTAGCTTCGAGGGATATCACAAACTGAGGAAAGCACAAAGAGTTGAATGGAACAACCGGGGGTTCTCAACTGTTCATGCTATTGCTGTAGCATTTTCATCTTTTTACCTCTTACTGTTGTCTGATACTTTTCATGAGGATCATCGTGATGAGCTAATCATTAGTAGAAGATCTACTTTGTCAGATACAACATTAGGGATCTCCATTGGATATTTTCTGGCAGACTTGGGAATGATATTTTGGCATTTTCCTGCTTTAGGTGGACTGGAGTATGTTTTGCACCATGCACTATCTATGTTCTCAATCTTTCTCTCCCTTGTAAGTGGAAAAGGGCAGATTTACATACTAATGGTTCTGTTCTCTGAGAGCACAACTCCTTTCGTGAACTTGAGATGGTACTTAGATGTTGCTGGTAAGAAGAACTCTAATCTGTACGTCATCAATGGTGTAGCATTGTTCCTGGGGTGGCTGGTTGCAAGGATTCTTTTGTTCATTTACTTTTTCATCCACATGTTTATCCATTTTGATCAAGTCAAGACAATTTTCCCTTTGGGCTTTTACAGCTTGCTCCTGGTGCCTCCTGTGTTAGCAGTAATGAATCTCGTTTGGTTTTGGAAGATTGTTAAAGGTTTAATTAAAACTGTTTCGAAGGCCACTCACAGTCAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006950 GO:0006970 GO:0008150 GO:0009628 GO:0009651 GO:0009987 GO:0019725 GO:0042592 GO:0043167 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0045454 GO:0046872 GO:0046914 GO:0050789 GO:0050794 GO:0050896 GO:0050897 GO:0065007 GO:0065008

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

TRAM_LAG1_CLN8

Protein Analysis

288

Amino Acids

33.17

Weight (kDa)

9.61

Isoelectric Point (pI)

38.73

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004387)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G10360 AT4G10360 AT4G10360
fragaria_vesca	FvH4_3g41280 FvH4_3g41280 FvH4_3g41280 FvH4_3g41280 FvH4_3g41280 FvH4_3g41280 FvH4_3g41280 FvH4_3g41280 FvH4_3g41280
malus_domestica	MD03G1046000.v1.1 MD11G1048300.v1.1
prunus_persica	Prupe.6G037300_v2.0.a1 Prupe.6G037300_v2.0.a1 Prupe.6G037300_v2.0.a1 Prupe.6G037300_v2.0.a1 Prupe.6G037300_v2.0.a1 Prupe.6G037300_v2.0.a1
pyrus_communis	pycom03g03620 pycom11g03940
rosa_chinensis	RchiOBHm_Chr5g0074081
rosa_laevigata	RLG00000036452
rosa_multiflora	Rmu_sc0000573.1_g000071
rosa_roxburghii	Rroxscaffold_1G00007320
rosa_rugosa	Rorug05G0429100
rosa_samantha	Rh5AG486700 Rh5BG507000 Rh5CG530500 Rh5DG519400
rosa_wichuraiana	Rw5G045170

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	769
AciI	CCGC	1 cut(s)	116
AclWI	GGATC	2 cut(s)	342, 401
AcsI	RAATTY	1 cut(s)	64
AcuI	CTGAAG	1 cut(s)	136
AfaI	GTAC	3 cut(s)	42, 593, 629
AfiI	CCNNNNNNNGG	2 cut(s)	26, 452
AflIII	ACRYGT	2 cut(s)	179, 705
AgsI	TTSAA	3 cut(s)	8, 146, 242
AjiI	CACGTC	1 cut(s)	182
AjnI	CCWGG	3 cut(s)	30, 654, 765
AjuI	GAANNNNNNNTTGG	2 cut(s)	418, 450
AluBI	AGCT	6 cut(s)	123, 130, 156, 201, 349, 759
AluI	AGCT	6 cut(s)	123, 130, 156, 201, 349, 759
Alw21I	GWGCWC	2 cut(s)	125, 566
AlwI	GGATC	2 cut(s)	342, 401
AoxI	GGCC	2 cut(s)	28, 846
ApoI	RAATTY	1 cut(s)	64
AspLEI	GCGC	1 cut(s)	93
AsuC2I	CCSGG	1 cut(s)	254
AsuII	TTCGAA	1 cut(s)	842
BanI	GGYRCC	1 cut(s)	769
BanII	GRGCYC	1 cut(s)	125
BbsI	GAAGAC	1 cut(s)	153
Bbv12I	GWGCWC	2 cut(s)	125, 566
BccI	CCATC	1 cut(s)	582
BciT130I	CCWGG	3 cut(s)	32, 656, 767
BclI	TGATCA	1 cut(s)	721
BcnI	CCSGG	1 cut(s)	254
BfmI	CTRYAG	1 cut(s)	282
BglII	AGATCT	1 cut(s)	365
Bme1390I	CCNGG	4 cut(s)	32, 254, 656, 767
BmgBI	CACGTC	1 cut(s)	182
BmiI	GGNNCC	1 cut(s)	771
BmrFI	CCNGG	4 cut(s)	32, 254, 656, 767
BpiI	GAAGAC	1 cut(s)	153
BplI	GAGNNNNNCTC	2 cut(s)	553, 585
BpmI	CTGGAG	1 cut(s)	482
Bpu14I	TTCGAA	1 cut(s)	842
BpuEI	CTTGAG	1 cut(s)	604
BpuMI	CCSGG	1 cut(s)	254
BsaJI	CCNNGG	2 cut(s)	253, 655
Bsc4I	CCNNNNNNNGG	2 cut(s)	26, 452
Bse1I	ACTGG	1 cut(s)	465
BseBI	CCWGG	3 cut(s)	32, 656, 767
BseDI	CCNNGG	2 cut(s)	253, 655
BseGI	GGATG	1 cut(s)	699
BseLI	CCNNNNNNNGG	2 cut(s)	26, 452
BseMII	CTCAG	2 cut(s)	212, 549
BseNI	ACTGG	1 cut(s)	465
BshFI	GGCC	2 cut(s)	30, 848
BshNI	GGYRCC	1 cut(s)	769
BsiHKAI	GWGCWC	2 cut(s)	125, 566
BsiSI	CCGG	1 cut(s)	253
BslI	CCNNNNNNNGG	2 cut(s)	26, 452
BsnI	GGCC	2 cut(s)	30, 848
Bsp119I	TTCGAA	1 cut(s)	842
Bsp1286I	GDGCHC	2 cut(s)	125, 566
Bsp143I	GATC	4 cut(s)	334, 365, 393, 721
BspACI	CCGC	1 cut(s)	116
BspANI	GGCC	2 cut(s)	30, 848
BspCNI	CTCAG	2 cut(s)	213, 550
BspHI	TCATGA	1 cut(s)	328
BspLI	GGNNCC	1 cut(s)	771
BspPI	GGATC	2 cut(s)	342, 401
BspQI	GCTCTTC	1 cut(s)	137
BspT104I	TTCGAA	1 cut(s)	842
BspT107I	GGYRCC	1 cut(s)	769
BsrI	ACTGG	1 cut(s)	465
BssECI	CCNNGG	2 cut(s)	253, 655
BssMI	GATC	4 cut(s)	334, 365, 393, 721
Bst2UI	CCWGG	3 cut(s)	32, 656, 767
Bst4CI	ACNGT	5 cut(s)	40, 268, 312, 838, 857
Bst6I	CTCTTC	1 cut(s)	137
BstBI	TTCGAA	1 cut(s)	842
BstC8I	GCNNGC	1 cut(s)	761
BstDEI	CTNAG	4 cut(s)	197, 221, 558, 595
BstENI	CCTNNNNNAGG	1 cut(s)	450
BstF5I	GGATG	1 cut(s)	699
BstHHI	GCGC	1 cut(s)	93
BstKTI	GATC	4 cut(s)	337, 368, 396, 724
BstMBI	GATC	4 cut(s)	334, 365, 393, 721
BstMWI	GCNNNNNNNGC	3 cut(s)	198, 756, 769
BstNI	CCWGG	3 cut(s)	32, 656, 767
BstNSI	RCATGY	1 cut(s)	709
BstSCI	CCNGG	4 cut(s)	30, 252, 654, 765
BstSFI	CTRYAG	1 cut(s)	282
BstV2I	GAAGAC	1 cut(s)	153
BstX2I	RGATCY	2 cut(s)	365, 393
BstYI	RGATCY	2 cut(s)	365, 393
BsuRI	GGCC	2 cut(s)	30, 848
BtrI	CACGTC	1 cut(s)	182
BtsCI	GGATG	1 cut(s)	699
BtsIMutI	CAGTG	1 cut(s)	54
Cac8I	GCNNGC	1 cut(s)	761
CciI	TCATGA	1 cut(s)	328
CfoI	GCGC	1 cut(s)	93
Csp6I	GTAC	3 cut(s)	41, 592, 628
CviAII	CATG	4 cut(s)	272, 329, 479, 706
CviQI	GTAC	3 cut(s)	41, 592, 628
DdeI	CTNAG	4 cut(s)	197, 221, 558, 595
DpnI	GATC	4 cut(s)	336, 367, 395, 723
DpnII	GATC	4 cut(s)	334, 365, 393, 721
Eam1104I	CTCTTC	1 cut(s)	137
EarI	CTCTTC	1 cut(s)	137
Ecl136II	GAGCTC	1 cut(s)	123
Eco24I	GRGCYC	1 cut(s)	125
Eco32I	GATATC	1 cut(s)	212
Eco53kI	GAGCTC	1 cut(s)	123
Eco57I	CTGAAG	1 cut(s)	136
EcoICRI	GAGCTC	1 cut(s)	123
EcoNI	CCTNNNNNAGG	1 cut(s)	450
EcoRII	CCWGG	3 cut(s)	30, 654, 765
EcoRV	GATATC	1 cut(s)	212
EcoT38I	GRGCYC	1 cut(s)	125
FaeI	CATG	4 cut(s)	275, 332, 482, 709
FaiI	YATR	7 cut(s)	273, 330, 468, 480, 491, 539, 707
FalI	AAGNNNNNCTT	2 cut(s)	355, 387
FatI	CATG	4 cut(s)	271, 328, 478, 705
FbaI	TGATCA	1 cut(s)	721
FokI	GGATG	1 cut(s)	686
FriOI	GRGCYC	1 cut(s)	125
GlaI	GCGC	1 cut(s)	92
GsuI	CTGGAG	1 cut(s)	482
HaeIII	GGCC	2 cut(s)	30, 848
HapII	CCGG	1 cut(s)	253
HhaI	GCGC	1 cut(s)	93
Hin1II	CATG	4 cut(s)	275, 332, 482, 709
Hin6I	GCGC	1 cut(s)	91
HinP1I	GCGC	1 cut(s)	91
HinfI	GANTC	3 cut(s)	11, 676, 793
HpaII	CCGG	1 cut(s)	253
Hpy166II	GTNNAC	3 cut(s)	169, 458, 580
Hpy188I	TCNGA	3 cut(s)	319, 379, 559
Hpy188III	TCNNGA	5 cut(s)	8, 329, 341, 577, 730
Hpy8I	GTNNAC	3 cut(s)	169, 458, 580
HpyAV	CCTTC	2 cut(s)	203, 838
HpyCH4III	ACNGT	5 cut(s)	40, 268, 312, 838, 857
HpyCH4IV	ACGT	2 cut(s)	181, 630
HpyCH4V	TGCA	3 cut(s)	475, 482, 671
HpyF10VI	GCNNNNNNNGC	3 cut(s)	198, 756, 769
HpyF3I	CTNAG	4 cut(s)	197, 221, 558, 595
HpySE526I	ACGT	2 cut(s)	181, 630
Hsp92II	CATG	4 cut(s)	275, 332, 482, 709
HspAI	GCGC	1 cut(s)	91
Ksp22I	TGATCA	1 cut(s)	721
Kzo9I	GATC	4 cut(s)	334, 365, 393, 721
LguI	GCTCTTC	1 cut(s)	137
LmnI	GCTCC	1 cut(s)	768
MaeII	ACGT	2 cut(s)	181, 630
MalI	GATC	4 cut(s)	336, 367, 395, 723
MboI	GATC	4 cut(s)	334, 365, 393, 721
MboII	GAAGA	5 cut(s)	124, 158, 375, 625, 823
MflI	RGATCY	2 cut(s)	365, 393
MhlI	GDGCHC	2 cut(s)	125, 566
MluCI	AATT	4 cut(s)	64, 82, 735, 828
MnlI	CCTC	5 cut(s)	199, 216, 314, 325, 783
MseI	TTAA	4 cut(s)	176, 819, 827, 831
MslI	CAYNNNNRTG	3 cut(s)	342, 542, 704
MspI	CCGG	1 cut(s)	253
MspR9I	CCNGG	4 cut(s)	32, 254, 656, 767
MvaI	CCWGG	3 cut(s)	32, 656, 767
MwoI	GCNNNNNNNGC	3 cut(s)	198, 756, 769
NciI	CCSGG	1 cut(s)	254
NdeII	GATC	4 cut(s)	334, 365, 393, 721
NlaIII	CATG	4 cut(s)	275, 332, 482, 709
NlaIV	GGNNCC	1 cut(s)	771
NspI	RCATGY	1 cut(s)	709
NspV	TTCGAA	1 cut(s)	842
PacI	TTAATTAA	1 cut(s)	831
PagI	TCATGA	1 cut(s)	328
PciI	ACATGT	1 cut(s)	705
PciSI	GCTCTTC	1 cut(s)	137
PfeI	GAWTC	3 cut(s)	11, 676, 793
PscI	ACATGT	1 cut(s)	705
Psp124BI	GAGCTC	1 cut(s)	125
Psp6I	CCWGG	3 cut(s)	30, 654, 765
PspGI	CCWGG	3 cut(s)	30, 654, 765
PspN4I	GGNNCC	1 cut(s)	771
PsuI	RGATCY	2 cut(s)	365, 393
RsaI	GTAC	3 cut(s)	42, 593, 629
RsaNI	GTAC	3 cut(s)	41, 592, 628
RseI	CAYNNNNRTG	3 cut(s)	342, 542, 704
SacI	GAGCTC	1 cut(s)	125
SapI	GCTCTTC	1 cut(s)	137
SaqAI	TTAA	4 cut(s)	176, 819, 827, 831
Sau3AI	GATC	4 cut(s)	334, 365, 393, 721
ScrFI	CCNGG	4 cut(s)	32, 254, 656, 767
SduI	GDGCHC	2 cut(s)	125, 566
SfcI	CTRYAG	1 cut(s)	282
SfuI	TTCGAA	1 cut(s)	842
SmiMI	CAYNNNNRTG	3 cut(s)	342, 542, 704
SmlI	CTYRAG	1 cut(s)	583
SmoI	CTYRAG	1 cut(s)	583
Sse9I	AATT	4 cut(s)	64, 82, 735, 828
SsiI	CCGC	1 cut(s)	116
SstI	GAGCTC	1 cut(s)	125
StyD4I	CCNGG	4 cut(s)	30, 252, 654, 765
TaaI	ACNGT	5 cut(s)	40, 268, 312, 838, 857
TaiI	ACGT	2 cut(s)	184, 633
TaqI	TCGA	2 cut(s)	204, 842
TasI	AATT	4 cut(s)	64, 82, 735, 828
TfiI	GAWTC	3 cut(s)	11, 676, 793
Tru1I	TTAA	4 cut(s)	176, 819, 827, 831
Tru9I	TTAA	4 cut(s)	176, 819, 827, 831
TscAI	CASTG	1 cut(s)	61
TspDTI	ATGAA	6 cut(s)	260, 282, 317, 676, 688, 806
TspRI	CASTG	1 cut(s)	61
XagI	CCTNNNNNAGG	1 cut(s)	450
XapI	RAATTY	1 cut(s)	64
XceI	RCATGY	1 cut(s)	709

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.