Rh5BG507000

Transmembrane protein 56-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5B
OG0004387
Physical Location & Seq
Reverse (-)
80456972 .. 80460688
3717 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5BG507000.1

Sequence Viewer

Length: 960 bp
ATGCACTTACGCACCCACAGATTACCCAAGGCAAAAGGCAATAGGCAAAAGTCCAAAGAGAATCAAAACCCATTACACAAACATAGAAAACTTGAGCTACTAAGCCTCTGCGGAAGGAAATTTTGCTACCCTTTGATTTGTTTGGTAAGATTTGAAGGGTTTAATCCAGCGAGGGATGGCTATGTCAGCCCAAACAAAGAGTTTCACTGGCTGGCTTCTGCCCTTTTTGGTATGCTTCTCTGCAAAATTGTTTACAAATTAACAGGTCTTATTAGCCTTCATAGCTTCAAGGAATATCAGAAATTGAGCAAAGCAGAAAAAGTTGAATGGAACAACCGGGGGTTCTCAACTGTTCATGCTATTGCTGTAGCGGTTGCATCTTTTTACCTTATACTCTTATCAGATACATTTCAGGAGGGTTATAGTGATGAGTTGATCGTTAGTAGAAGATCTACTTTTTCAGATACAACATTGGGGATCTCCATTGGTTATTTTCTGGCAGACATAGCAATGATTTTTTGGCATTTTCCTGCTTTAGGTGGACTGGAGTATGTTTTGCACCATGGACTATCTATGTTCTCAATCTTCCTTTCCCTTGTAAGTGGTGAAGGGCAGATTTACATACTAATGGTTCTGTTCTCTGAGAGCACAACTCCTTTTGTAAACCTAAGATGGTACTTGGATATTGCTGGTAAGAAGAACTCTAAGCTGTACGTCTGCAATGGTGTAGCATTGTTCCTGGGTTGGCTGGTTGCAAGGATTCTTTTGTTCATTTACTTTTTCGTCCACATGTTTTTCCATTTTCATCAAGTCAAGACAATATTTCCGTTGGGATTTTACAGCTTGCTCACGATACCTCCTGTGTTGGCAATCATGAATCTGTTTTGGTTTTGGAAGATTGCCAAAGGTTTGATCAAAACAGTTTCAAAGGGCACACAGAAGACCATACACAGTCAGTGA

Protein Analysis

319

Amino Acids

36.69

Weight (kDa)

9.69

Isoelectric Point (pI)

26.85

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TRAM_LAG1_CLN8 PF03798 109 - 302 1.8e-34 TLC domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 111, 371
AclWI GGATC 1 cut(s) 485
AcsI RAATTY 1 cut(s) 119
AfaI GTAC 2 cut(s) 677, 713
AfiI CCNNNNNNNGG 1 cut(s) 536
AflIII ACRYGT 1 cut(s) 789
AgsI TTSAA 4 cut(s) 155, 289, 326, 927
AjnI CCWGG 1 cut(s) 738
AluBI AGCT 4 cut(s) 97, 285, 709, 843
AluI AGCT 4 cut(s) 97, 285, 709, 843
Alw21I GWGCWC 1 cut(s) 650
AlwI GGATC 1 cut(s) 485
ApoI RAATTY 1 cut(s) 119
AsuC2I CCSGG 1 cut(s) 338
AsuHPI GGTGA 1 cut(s) 617
BaeGI GKGCMC 1 cut(s) 935
BbsI GAAGAC 1 cut(s) 947
Bbv12I GWGCWC 1 cut(s) 650
BccI CCATC 2 cut(s) 170, 666
BciT130I CCWGG 1 cut(s) 740
BclI TGATCA 1 cut(s) 912
BcnI CCSGG 1 cut(s) 338
BfmI CTRYAG 1 cut(s) 366
BglII AGATCT 1 cut(s) 449
Bme1390I CCNGG 2 cut(s) 338, 740
BmrFI CCNGG 2 cut(s) 338, 740
BmsI GCATC 1 cut(s) 386
BpiI GAAGAC 1 cut(s) 947
BplI GAGNNNNNCTC 2 cut(s) 637, 669
BpmI CTGGAG 1 cut(s) 566
BpuEI CTTGAG 1 cut(s) 113
BpuMI CCSGG 1 cut(s) 338
BsaJI CCNNGG 4 cut(s) 27, 337, 562, 739
BsaXI ACNNNNNCTCC 2 cut(s) 841, 871
Bsc4I CCNNNNNNNGG 1 cut(s) 536
Bse1I ACTGG 2 cut(s) 212, 549
Bse3DI GCAATG 2 cut(s) 516, 727
BseBI CCWGG 1 cut(s) 740
BseDI CCNNGG 4 cut(s) 27, 337, 562, 739
BseGI GGATG 1 cut(s) 181
BseLI CCNNNNNNNGG 1 cut(s) 536
BseMI GCAATG 2 cut(s) 516, 727
BseMII CTCAG 1 cut(s) 633
BseNI ACTGG 2 cut(s) 212, 549
BseSI GKGCMC 1 cut(s) 935
BsiHKAI GWGCWC 1 cut(s) 650
BsiSI CCGG 1 cut(s) 337
BslI CCNNNNNNNGG 1 cut(s) 536
Bsp1286I GDGCHC 2 cut(s) 650, 935
Bsp143I GATC 4 cut(s) 435, 449, 477, 912
Bsp19I CCATGG 1 cut(s) 562
BspACI CCGC 2 cut(s) 111, 371
BspCNI CTCAG 1 cut(s) 634
BspHI TCATGA 1 cut(s) 873
BspPI GGATC 1 cut(s) 485
BsrDI GCAATG 2 cut(s) 516, 727
BsrI ACTGG 2 cut(s) 212, 549
BssECI CCNNGG 4 cut(s) 27, 337, 562, 739
BssMI GATC 4 cut(s) 435, 449, 477, 912
BssT1I CCWWGG 2 cut(s) 27, 562
Bst2UI CCWGG 1 cut(s) 740
Bst4CI ACNGT 3 cut(s) 352, 922, 953
BstC8I GCNNGC 2 cut(s) 213, 845
BstDEI CTNAG 4 cut(s) 101, 642, 668, 705
BstDSI CCRYGG 1 cut(s) 562
BstENI CCTNNNNNAGG 1 cut(s) 534
BstF5I GGATG 1 cut(s) 181
BstKTI GATC 4 cut(s) 438, 452, 480, 915
BstMBI GATC 4 cut(s) 435, 449, 477, 912
BstMWI GCNNNNNNNGC 3 cut(s) 186, 282, 506
BstNI CCWGG 1 cut(s) 740
BstNSI RCATGY 1 cut(s) 793
BstSCI CCNGG 2 cut(s) 336, 738
BstSFI CTRYAG 1 cut(s) 366
BstSLI GKGCMC 1 cut(s) 935
BstV2I GAAGAC 1 cut(s) 947
BstX2I RGATCY 2 cut(s) 449, 477
BstYI RGATCY 2 cut(s) 449, 477
BtgI CCRYGG 1 cut(s) 562
BtsCI GGATG 1 cut(s) 181
BtsIMutI CAGTG 1 cut(s) 205
Cac8I GCNNGC 2 cut(s) 213, 845
CciI TCATGA 1 cut(s) 873
Csp6I GTAC 2 cut(s) 676, 712
CviAII CATG 4 cut(s) 356, 563, 790, 874
CviQI GTAC 2 cut(s) 676, 712
DdeI CTNAG 4 cut(s) 101, 642, 668, 705
DpnI GATC 4 cut(s) 437, 451, 479, 914
DpnII GATC 4 cut(s) 435, 449, 477, 912
Eco130I CCWWGG 2 cut(s) 27, 562
EcoNI CCTNNNNNAGG 1 cut(s) 534
EcoRII CCWGG 1 cut(s) 738
EcoT14I CCWWGG 2 cut(s) 27, 562
ErhI CCWWGG 2 cut(s) 27, 562
FaeI CATG 4 cut(s) 359, 566, 793, 877
FalI AAGNNNNNCTT 2 cut(s) 439, 471
FatI CATG 4 cut(s) 355, 562, 789, 873
FbaI TGATCA 1 cut(s) 912
FokI GGATG 1 cut(s) 188
GsuI CTGGAG 1 cut(s) 566
HapII CCGG 1 cut(s) 337
Hin1II CATG 4 cut(s) 359, 566, 793, 877
HinfI GANTC 3 cut(s) 61, 760, 877
HpaII CCGG 1 cut(s) 337
HphI GGTGA 1 cut(s) 617
Hpy166II GTNNAC 4 cut(s) 253, 542, 664, 787
Hpy188I TCNGA 4 cut(s) 300, 403, 463, 643
Hpy188III TCNNGA 4 cut(s) 413, 814, 850, 874
Hpy8I GTNNAC 4 cut(s) 253, 542, 664, 787
HpyAV CCTTC 4 cut(s) 108, 149, 287, 602
HpyCH4III ACNGT 3 cut(s) 352, 922, 953
HpyCH4IV ACGT 1 cut(s) 714
HpyCH4V TGCA 6 cut(s) 4, 243, 377, 559, 720, 755
HpyF10VI GCNNNNNNNGC 3 cut(s) 186, 282, 506
HpyF3I CTNAG 4 cut(s) 101, 642, 668, 705
HpySE526I ACGT 1 cut(s) 714
Hsp92II CATG 4 cut(s) 359, 566, 793, 877
Ksp22I TGATCA 1 cut(s) 912
Kzo9I GATC 4 cut(s) 435, 449, 477, 912
LweI GCATC 1 cut(s) 386
MaeII ACGT 1 cut(s) 714
MalI GATC 4 cut(s) 437, 451, 479, 914
MboI GATC 4 cut(s) 435, 449, 477, 912
MboII GAAGA 5 cut(s) 459, 577, 709, 907, 952
MflI RGATCY 2 cut(s) 449, 477
MhlI GDGCHC 2 cut(s) 650, 935
MluCI AATT 4 cut(s) 119, 246, 257, 302
MnlI CCTC 4 cut(s) 116, 165, 409, 867
MseI TTAA 2 cut(s) 162, 260
MslI CAYNNNNRTG 2 cut(s) 509, 626
MspI CCGG 1 cut(s) 337
MspR9I CCNGG 2 cut(s) 338, 740
MvaI CCWGG 1 cut(s) 740
MwoI GCNNNNNNNGC 3 cut(s) 186, 282, 506
NciI CCSGG 1 cut(s) 338
NcoI CCATGG 1 cut(s) 562
NdeII GATC 4 cut(s) 435, 449, 477, 912
NlaIII CATG 4 cut(s) 359, 566, 793, 877
NspI RCATGY 1 cut(s) 793
PagI TCATGA 1 cut(s) 873
PciI ACATGT 1 cut(s) 789
PfeI GAWTC 3 cut(s) 61, 760, 877
PscI ACATGT 1 cut(s) 789
Psp6I CCWGG 1 cut(s) 738
PspGI CCWGG 1 cut(s) 738
PsuI RGATCY 2 cut(s) 449, 477
RsaI GTAC 2 cut(s) 677, 713
RsaNI GTAC 2 cut(s) 676, 712
RseI CAYNNNNRTG 2 cut(s) 509, 626
SaqAI TTAA 2 cut(s) 162, 260
Sau3AI GATC 4 cut(s) 435, 449, 477, 912
ScrFI CCNGG 2 cut(s) 338, 740
SduI GDGCHC 2 cut(s) 650, 935
SfaNI GCATC 1 cut(s) 386
SfcI CTRYAG 1 cut(s) 366
SmiMI CAYNNNNRTG 2 cut(s) 509, 626
SmlI CTYRAG 1 cut(s) 92
SmoI CTYRAG 1 cut(s) 92
Sse9I AATT 4 cut(s) 119, 246, 257, 302
SsiI CCGC 2 cut(s) 111, 371
SspI AATATT 1 cut(s) 822
StyD4I CCNGG 2 cut(s) 336, 738
StyI CCWWGG 2 cut(s) 27, 562
TaaI ACNGT 3 cut(s) 352, 922, 953
TaiI ACGT 1 cut(s) 717
TasI AATT 4 cut(s) 119, 246, 257, 302
TfiI GAWTC 3 cut(s) 61, 760, 877
Tru1I TTAA 2 cut(s) 162, 260
Tru9I TTAA 2 cut(s) 162, 260
TscAI CASTG 1 cut(s) 212
TspDTI ATGAA 5 cut(s) 269, 344, 760, 794, 890
TspGWI ACGGA 1 cut(s) 816
TspRI CASTG 1 cut(s) 212
XagI CCTNNNNNAGG 1 cut(s) 534
XapI RAATTY 1 cut(s) 119
XceI RCATGY 1 cut(s) 793
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.