pycom11g03920

phosphatase 2c

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr11
OG0006212
Physical Location & Seq
Reverse (-)
3068824 .. 3070828
2005 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom11g03920.3

Sequence Viewer

Length: 816 bp
ATGGGTTCGTGTTGTTCGACGCAGACAAGCTTGGGGCAGAGGATTGACACGTTGGAGGAGCAGAGCAAAGTGGATTATGCAGACGACGCTTCTCCGAAGGCCAGAGGCGGCTCGAAACGGTGGAAGAGGAAGAAGCCGGGAGGTGAGCAAGTGGATTGCAGAGACTTGGGCGATCAGATTGATATTCCGGGCAGATTGATCGGCAATGGAAGCAGCAAAGTCGCCTGCTTGTATACCCAGCAGGGAAAGAAAGGGACCAATCAGGACGCCATGCTTGTCTGGGAGAATTTGGCCACAAGAAGTGATACAACATTTTGTGGGGTGTTTGACGGGCATGGTCCATTTGGTCATATGGTCGCCAAGAAAGTTCGAGATTCTCTTCCTCTTATACTATGCACTCAGTGGAAAGCTAATTCAAGTGGTGACCTGAGCAATCTCAATGAGGCTGAGAATGCGAATGGGAGCTCTAATTTTGAGGAACCTGTATCACCAAGCATTGATGATGAATGGTGCGAGTCGTTGGAGGTTAAGGAAAATGAAAAACTACCTGACATGTATCTACCACTAAAACAGTCATTCTTAAAAGCTTTCAAGTTAATGGATAAGGAACTAAAGTTGCATCCAACAATCGATTGCTTCTGCAGTGGGACGACTGCTGTTACATTGGTTAAGCAGGGTCAGAATCTTGTGATTGGAAATGTTGGGGATTCAAGGGCTGTGCTAGCAACGAGAGACAATGACAACGCTCTGATTGCTGTACAATTGACGGTAGACTTAAAGCCAGATCTTCCGGGATCCATCGTCCTATTTATATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005623 GO:0005886 GO:0016020 GO:0044464 GO:0071944
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PP2C

Protein Analysis

272

Amino Acids

29.54

Weight (kDa)

5.23

Isoelectric Point (pI)

32.36

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 2 cut(s) 233, 771
AciI CCGC 1 cut(s) 108
AclWI GGATC 2 cut(s) 789, 802
AcoI YGGCCR 1 cut(s) 291
AcsI RAATTY 1 cut(s) 286
AcyI GRCGYC 1 cut(s) 267
AdeI CACNNNGTG 1 cut(s) 402
AfaI GTAC 1 cut(s) 759
AflIII ACRYGT 2 cut(s) 48, 552
AgsI TTSAA 3 cut(s) 417, 592, 711
AluBI AGCT 4 cut(s) 30, 410, 465, 587
AluI AGCT 4 cut(s) 30, 410, 465, 587
Alw21I GWGCWC 1 cut(s) 467
Alw26I GTCTC 2 cut(s) 156, 726
AlwI GGATC 2 cut(s) 789, 802
AoxI GGCC 2 cut(s) 99, 291
ApeKI GCWGC 1 cut(s) 213
ApoI RAATTY 1 cut(s) 286
AspS9I GGNCC 2 cut(s) 255, 338
AsuC2I CCSGG 3 cut(s) 138, 189, 792
AsuHPI GGTGA 3 cut(s) 155, 434, 480
AsuNHI GCTAGC 1 cut(s) 721
AvaII GGWCC 2 cut(s) 255, 338
BalI TGGCCA 1 cut(s) 293
BamHI GGATCC 1 cut(s) 794
BanII GRGCYC 1 cut(s) 467
Bbv12I GWGCWC 1 cut(s) 467
BbvI GCAGC 1 cut(s) 225
BccI CCATC 1 cut(s) 806
BcgI CGANNNNNNTGC 4 cut(s) 181, 202, 215, 236
BcnI CCSGG 3 cut(s) 138, 189, 792
BcoDI GTCTC 2 cut(s) 156, 726
BfaI CTAG 1 cut(s) 722
BfmI CTRYAG 1 cut(s) 640
BglII AGATCT 1 cut(s) 784
BisI GCNGC 2 cut(s) 109, 214
BlsI GCNGC 2 cut(s) 110, 215
Bme1390I CCNGG 3 cut(s) 138, 189, 792
Bme18I GGWCC 2 cut(s) 255, 338
BmgT120I GGNCC 2 cut(s) 255, 338
BmiI GGNNCC 3 cut(s) 256, 480, 796
BmrFI CCNGG 3 cut(s) 138, 189, 792
BmsI GCATC 1 cut(s) 628
BmtI GCTAGC 1 cut(s) 725
Bpu10I CCTNAGC 1 cut(s) 428
BpuMI CCSGG 3 cut(s) 138, 189, 792
Bsa29I ATCGAT 1 cut(s) 630
BsaHI GRCGYC 1 cut(s) 267
Bse3DI GCAATG 1 cut(s) 211
BseCI ATCGAT 1 cut(s) 630
BseGI GGATG 1 cut(s) 619
BseMI GCAATG 1 cut(s) 211
BseMII CTCAG 3 cut(s) 413, 419, 438
BseRI GAGGAG 1 cut(s) 71
BseXI GCAGC 1 cut(s) 225
BseYI CCCAGC 1 cut(s) 237
BshFI GGCC 2 cut(s) 101, 293
BshVI ATCGAT 1 cut(s) 630
BsiHKAI GWGCWC 1 cut(s) 467
BsiSI CCGG 3 cut(s) 137, 188, 791
BslFI GGGAC 2 cut(s) 268, 661
BsmAI GTCTC 2 cut(s) 156, 726
BsmFI GGGAC 2 cut(s) 268, 661
BsmI GAATGC 1 cut(s) 457
BsnI GGCC 2 cut(s) 101, 293
Bsp1286I GDGCHC 1 cut(s) 467
Bsp1407I TGTACA 1 cut(s) 757
Bsp143I GATC 4 cut(s) 172, 198, 784, 794
BspACI CCGC 1 cut(s) 108
BspANI GGCC 2 cut(s) 101, 293
BspCNI CTCAG 3 cut(s) 412, 420, 439
BspDI ATCGAT 1 cut(s) 630
BspLI GGNNCC 3 cut(s) 256, 480, 796
BspMAI CTGCAG 1 cut(s) 644
BspOI GCTAGC 1 cut(s) 725
BspPI GGATC 2 cut(s) 789, 802
BsrDI GCAATG 1 cut(s) 211
BsrGI TGTACA 1 cut(s) 757
BssMI GATC 4 cut(s) 172, 198, 784, 794
BssNAI GTATAC 1 cut(s) 234
BssNI GRCGYC 1 cut(s) 267
Bst1107I GTATAC 1 cut(s) 234
Bst4CI ACNGT 3 cut(s) 120, 573, 769
Bst6I CTCTTC 2 cut(s) 119, 384
BstACI GRCGYC 1 cut(s) 267
BstAUI TGTACA 1 cut(s) 757
BstC8I GCNNGC 2 cut(s) 226, 723
BstDEI CTNAG 3 cut(s) 399, 428, 447
BstEII GGTNACC 1 cut(s) 422
BstF5I GGATG 1 cut(s) 619
BstKTI GATC 4 cut(s) 175, 201, 787, 797
BstMAI GTCTC 2 cut(s) 156, 726
BstMBI GATC 4 cut(s) 172, 198, 784, 794
BstMWI GCNNNNNNNGC 5 cut(s) 86, 210, 452, 722, 752
BstNSI RCATGY 1 cut(s) 556
BstPI GGTNACC 1 cut(s) 422
BstSCI CCNGG 3 cut(s) 136, 187, 790
BstSFI CTRYAG 1 cut(s) 640
BstV1I GCAGC 1 cut(s) 225
BstX2I RGATCY 2 cut(s) 784, 794
BstYI RGATCY 2 cut(s) 784, 794
BstZ17I GTATAC 1 cut(s) 234
Bsu15I ATCGAT 1 cut(s) 630
BsuRI GGCC 2 cut(s) 101, 293
BsuTUI ATCGAT 1 cut(s) 630
BtsCI GGATG 1 cut(s) 619
BtsI GCAGTG 1 cut(s) 649
BtsIMutI CAGTG 2 cut(s) 407, 649
Cac8I GCNNGC 2 cut(s) 226, 723
Cfr13I GGNCC 2 cut(s) 255, 338
ClaI ATCGAT 1 cut(s) 630
CseI GACGC 3 cut(s) 28, 95, 275
Csp6I GTAC 1 cut(s) 758
CviAII CATG 3 cut(s) 271, 335, 553
CviQI GTAC 1 cut(s) 758
DdeI CTNAG 3 cut(s) 399, 428, 447
DpnI GATC 4 cut(s) 174, 200, 786, 796
DpnII GATC 4 cut(s) 172, 198, 784, 794
DraIII CACNNNGTG 1 cut(s) 402
EaeI YGGCCR 1 cut(s) 291
Eam1104I CTCTTC 2 cut(s) 119, 384
EarI CTCTTC 2 cut(s) 119, 384
Ecl136II GAGCTC 1 cut(s) 465
Eco24I GRGCYC 1 cut(s) 467
Eco47I GGWCC 2 cut(s) 255, 338
Eco53kI GAGCTC 1 cut(s) 465
Eco91I GGTNACC 1 cut(s) 422
EcoICRI GAGCTC 1 cut(s) 465
EcoO65I GGTNACC 1 cut(s) 422
EcoT38I GRGCYC 1 cut(s) 467
FaeI CATG 3 cut(s) 274, 338, 556
FaqI GGGAC 2 cut(s) 268, 661
FatI CATG 3 cut(s) 270, 334, 552
FauNDI CATATG 1 cut(s) 351
FblI GTMKAC 2 cut(s) 233, 771
Fnu4HI GCNGC 2 cut(s) 109, 214
FokI GGATG 1 cut(s) 606
FriOI GRGCYC 1 cut(s) 467
Fsp4HI GCNGC 2 cut(s) 109, 214
FspBI CTAG 1 cut(s) 722
GluI GCNGC 2 cut(s) 109, 214
GsaI CCCAGC 1 cut(s) 241
HaeIII GGCC 2 cut(s) 101, 293
HapII CCGG 3 cut(s) 137, 188, 791
HgaI GACGC 3 cut(s) 28, 95, 275
Hin1I GRCGYC 1 cut(s) 267
Hin1II CATG 3 cut(s) 274, 338, 556
HindIII AAGCTT 2 cut(s) 28, 585
HinfI GANTC 4 cut(s) 374, 515, 682, 707
HpaII CCGG 3 cut(s) 137, 188, 791
HphI GGTGA 3 cut(s) 155, 434, 480
Hpy166II GTNNAC 2 cut(s) 234, 772
Hpy188I TCNGA 4 cut(s) 96, 177, 681, 750
Hpy188III TCNNGA 2 cut(s) 263, 371
Hpy8I GTNNAC 2 cut(s) 234, 772
Hpy99I CGWCG 2 cut(s) 22, 89
HpyAV CCTTC 1 cut(s) 91
HpyCH4III ACNGT 3 cut(s) 120, 573, 769
HpyCH4IV ACGT 1 cut(s) 50
HpyCH4V TGCA 5 cut(s) 80, 159, 396, 619, 642
HpyF10VI GCNNNNNNNGC 5 cut(s) 86, 210, 452, 722, 752
HpyF3I CTNAG 3 cut(s) 399, 428, 447
HpySE526I ACGT 1 cut(s) 50
Hsp92I GRCGYC 1 cut(s) 267
Hsp92II CATG 3 cut(s) 274, 338, 556
Kzo9I GATC 4 cut(s) 172, 198, 784, 794
LmnI GCTCC 2 cut(s) 58, 462
Lsp1109I GCAGC 1 cut(s) 225
LweI GCATC 1 cut(s) 628
MaeI CTAG 1 cut(s) 722
MaeII ACGT 1 cut(s) 50
MaeIII GTNAC 2 cut(s) 422, 658
MalI GATC 4 cut(s) 174, 200, 786, 796
MboI GATC 4 cut(s) 172, 198, 784, 794
MboII GAAGA 4 cut(s) 136, 142, 371, 779
MfeI CAATTG 1 cut(s) 761
MflI RGATCY 2 cut(s) 784, 794
MhlI GDGCHC 1 cut(s) 467
MlsI TGGCCA 1 cut(s) 293
MluCI AATT 4 cut(s) 286, 412, 469, 761
MluNI TGGCCA 1 cut(s) 293
MlyI GAGTC 1 cut(s) 524
MmeI TCCRAC 3 cut(s) 33, 501, 647
MnlI CCTC 9 cut(s) 33, 49, 98, 120, 134, 393, 436, 469, 517
Mox20I TGGCCA 1 cut(s) 293
MscI TGGCCA 1 cut(s) 293
MseI TTAA 5 cut(s) 528, 581, 596, 669, 776
Msp20I TGGCCA 1 cut(s) 293
MspI CCGG 3 cut(s) 137, 188, 791
MspR9I CCNGG 3 cut(s) 138, 189, 792
MunI CAATTG 1 cut(s) 761
Mva1269I GAATGC 1 cut(s) 457
MwoI GCNNNNNNNGC 5 cut(s) 86, 210, 452, 722, 752
NciI CCSGG 3 cut(s) 138, 189, 792
NdeI CATATG 1 cut(s) 351
NdeII GATC 4 cut(s) 172, 198, 784, 794
NheI GCTAGC 1 cut(s) 721
NlaIII CATG 3 cut(s) 274, 338, 556
NlaIV GGNNCC 3 cut(s) 256, 480, 796
NmuCI GTSAC 1 cut(s) 422
NspI RCATGY 1 cut(s) 556
PciI ACATGT 1 cut(s) 552
PcsI WCGNNNNNNNCGW 1 cut(s) 14
PctI GAATGC 1 cut(s) 457
PfeI GAWTC 3 cut(s) 374, 682, 707
PfoI TCCNGGA 1 cut(s) 790
PkrI GCNGC 2 cut(s) 110, 215
PleI GAGTC 1 cut(s) 523
PpsI GAGTC 1 cut(s) 523
PscI ACATGT 1 cut(s) 552
Psp124BI GAGCTC 1 cut(s) 467
PspEI GGTNACC 1 cut(s) 422
PspFI CCCAGC 1 cut(s) 237
PspN4I GGNNCC 3 cut(s) 256, 480, 796
PspPI GGNCC 2 cut(s) 255, 338
PstI CTGCAG 1 cut(s) 644
PsuI RGATCY 2 cut(s) 784, 794
RsaI GTAC 1 cut(s) 759
RsaNI GTAC 1 cut(s) 758
SacI GAGCTC 1 cut(s) 467
SaqAI TTAA 5 cut(s) 528, 581, 596, 669, 776
SatI GCNGC 2 cut(s) 109, 214
Sau3AI GATC 4 cut(s) 172, 198, 784, 794
Sau96I GGNCC 2 cut(s) 255, 338
SchI GAGTC 1 cut(s) 524
ScrFI CCNGG 3 cut(s) 138, 189, 792
SduI GDGCHC 1 cut(s) 467
SfaNI GCATC 1 cut(s) 628
SfcI CTRYAG 1 cut(s) 640
SinI GGWCC 2 cut(s) 255, 338
Sse9I AATT 4 cut(s) 286, 412, 469, 761
SsiI CCGC 1 cut(s) 108
SspMI CTAG 1 cut(s) 722
SstI GAGCTC 1 cut(s) 467
StyD4I CCNGG 3 cut(s) 136, 187, 790
TaaI ACNGT 3 cut(s) 120, 573, 769
TaiI ACGT 1 cut(s) 53
TaqI TCGA 4 cut(s) 17, 113, 370, 630
TasI AATT 4 cut(s) 286, 412, 469, 761
TatI WGTACW 1 cut(s) 757
TauI GCSGC 1 cut(s) 111
TfiI GAWTC 3 cut(s) 374, 682, 707
Tru1I TTAA 5 cut(s) 528, 581, 596, 669, 776
Tru9I TTAA 5 cut(s) 528, 581, 596, 669, 776
TscAI CASTG 2 cut(s) 407, 649
TseFI GTSAC 1 cut(s) 422
TseI GCWGC 1 cut(s) 213
Tsp45I GTSAC 1 cut(s) 422
TspDTI ATGAA 2 cut(s) 519, 552
TspRI CASTG 2 cut(s) 407, 649
VpaK11BI GGWCC 2 cut(s) 255, 338
XapI RAATTY 1 cut(s) 286
XceI RCATGY 1 cut(s) 556
XmiI GTMKAC 2 cut(s) 233, 771
XspI CTAG 1 cut(s) 722
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.