Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr09

Orthogroup ID

OG0004180

Physical Location & Seq

Genomic Coordinates Forward (+)

30570067 .. 30576339

Gene Structure 6273 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD09G1240500.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2508 bp

ATGCTGAATCTTGGATCTTTGTGGGAGGGAAAAACGGGAATTAGGGTTCTGGGAGGTACATGTATGGCTTCAGGGCCTACAGTAGGAGAAGGTGATGGAGCCAGAGAGAAACAGAGGTTCACGGAGAGCAAGGTCTATACTCGAAAAGCTTTCAAAGGCCCCAAGAAGAACAACATCATCAACAACGCCAACGCCGACGCCAACACAAATACTGACTCAACCGCCACTGCCTTAGCCGCCCCCTCCGCCCCTGCCGCCACCCCAACCACCACCAAGGACAACAACATCAACGGGAAGGACAACATCATCAACAATAACAAGAAGGACAGCAACATCAACGAGAACGAGAAGGGCATCAACGAGAACAAGAAAAACAGCAACATCAACGTGAACGAGAAGGACAGCAACAACGTCGGGAACGAGAAGGACAGCAGCAACGTCGGGAACGAGAAGGACAGCAGCAACGTCGGGAACGAGAAGGACAGCAGCAACGTCGGGAACGAGAAGGACAGCAGCAACGTCGGGAACGAGAAGGACAGCAACAACGTCGGGAACGAGAAGGACAGCAACAACGTCGGGAACGAGAAGGACACCAACAACGTCGAGAACCAGAAGGACTGCAACAACGATGAAAACAAGGACACCAATAGTGAGAACAAGCATAACGGGAATAATGATGAGAATTCCACTCAGCCTCCGGCTCAGACTGTGCTGTCTGGGGATGGGAATTCCGCTCAGCAGCAGCTGCTCATTTCACAGTCTGGTGCTGCTGCCTCTGATGACTCCTCGAGCCTGAACCGGCAAGAACCCGCGGTGACAGCAGTAGAGGCAGTGTTAGAGGCAACTATTGAGCAAGAAAGTCGGAATTCACCTGCAGAGAATGGGGTGGTCAAGCCGACTTCAGATAGCCGAATTAAGCTTAATTTTGCTTCAAGGTCGAAGCAGGACAAGCGGAAGCTACGAAGGAAGCTTGAGAGCGAGCTTGATTTGGTGCGGAGTTTGGTGAAGAGGATTGAAGCCAAACAGGGGCAGATTGGTGGGGTTAGTCTCTCCCATATTTCAGTGAATGATGGGGCGAATAGTGCAGGTGGAGGACTGAGGCGGGTTAACTCTGAGGTTGCTTCTGTAGGTGTTCCTCGAGAGCCTACCAGGCCTTTGCATCAGCTGAGTATATCCGTGTTAGAGAATAGTCAAGGAATGAGTGATATTGTGGAGAAAGAGAAGAGAACCCCCAAGGCGAACCAGTTCTATCGTAATTCTGAGTTTTTGCTGGCCAAGGATAAGATTCCACCTGCTGAGAGTAACAAGAAGTCGAAATCGAATGGGAAAAAACATGGTGGAGGAGAATTGGGGCAAGGGTTTGGTGGGATGGGAAGCAAGTTTTTCAAGAGTTGCAGTTCTTTGCTTGAAAAATTGATGAAACACAAGCATGGTTGGGTGTTTAATGAACCTGTTGATGCTGCAAAGCTTGGTTTGCACGATTATCATATCATTATCAAGCATCCAATGGACTTGGGTACCATTAAGTCGAGGTTGAACAAGAATTGGTACAAGTCTCCGAAAGAATTTGCGGAGGATGTGAGACTTACATTTCACAATGCCATGACCTATAACCCCCAAGGGCAGGATGTTCATGTCATGGCAGAGCAATTATCCAGAATATTTGAGGACAGGTGGGCTATCATAGAGTCAGATTACAATCGTGAGATGAGGTTTGGATATGATTATGGGGTTAATCTTCCAACACCTACACCGAGAAAGGCACCTCTGCTGCCACCACCTCCTCTTGATATGCGAAGGATTTTGGACAGGTCCGAGTCCATTTCTCATCACGCTGATCCGAAGCCAAAACCCATGACTATTACTCCTAGGACCCCCGCTCCTAAGAAGCCCAAGGCTAAAGATCCTCATAAAAGGGACATGACTTATGACGAAAAGCAAAAGCTTAGCACCCAACTCCAGAGTCTGCCTTCAGAGAAGCTGGATGCCATTGTACAGATTATAAAGAGGAGGAATTCATCACTCTTCCAGCATGATGATGAAATTGAAGTGGACATAGATAGCGTCGATACCGAGACCCTGTGGGAGCTGGACAGGTTTGTAACCAACTACAAGAAGAGTTTGAGCAAACACAAGCGAAAAGCTGAAATGCAAGCCAGAGCAGAAGCTGAGCAGAATGTCCAGCAGCAGACCCAGGCCCCAGTTGCAGCAGAGGTTCCGAAACAACCTAAAACCGGTAAAATGAAAGGATTGTTTCCTCTTCAACACCCATTCAAGGGGATAACCAGGGTGATAATAGGAGTAGGTCGAGTAGTTCAAGCAGCTCCAGCAGTGATTCTGGATCTTCCTCCAGTGACTCAGATAGTGATAGTTCGTCAGCATCTGGATCGGATGCGGGGTCGCCTAGGACTTAACTATTTTCTTTTGAGATCTCTGAAAATTAGGGTAGATGGTGATCGGAAGCTTTTTCAGACAAATGTTCGATTTGAATCTGTGATTGGTGTATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0007275 GO:0007346 GO:0008150 GO:0009292 GO:0009294 GO:0009987 GO:0022622 GO:0032501 GO:0032502 GO:0044764 GO:0045787 GO:0045931 GO:0048364 GO:0048518 GO:0048522 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0051704 GO:0051726 GO:0065007 GO:0099402

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

BET Bromodomain

Protein Analysis

836

Amino Acids

92.36

Weight (kDa)

9.23

Isoelectric Point (pI)

45.63

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Bromodomain	PF00439	465 - 549	3.4e-20	Bromodomain
BET	PF17035	641 - 702	4e-23	Bromodomain extra-terminal - transcription regulation

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004180)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G06230 AT1G06230 AT1G06230 AT1G06230
fragaria_vesca	FvH4_6g27070 FvH4_6g27070 FvH4_6g27070 FvH4_6g27070 FvH4_6g27070
malus_domestica	MD09G1240500.v1.1 MD17G1233300.v1.1
prunus_persica	Prupe.3G124500_v2.0.a1 Prupe.3G124500_v2.0.a1 Prupe.3G124500_v2.0.a1 Prupe.3G124500_v2.0.a1 Prupe.3G124500_v2.0.a1 Prupe.3G124500_v2.0.a1 Prupe.3G124500_v2.0.a1 Prupe.3G124500_v2.0.a1 Prupe.3G124500_v2.0.a1 Prupe.3G124500_v2.0.a1
pyrus_communis	pycom09g15900 pycom17g23630
rosa_chinensis	RchiOBHm_Chr2g0129031
rosa_laevigata	RLG00000019045
rosa_multiflora	Rmu_sc0009747.1_g000004
rosa_rugosa	Rorug02G0283500 Rorug02G0283500
rosa_samantha	Rh2AG336000 Rh2BG344000 Rh2CG322900 Rh2DG360600
rosa_wichuraiana	Rw2G027240

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	2003
AarI	CACCTGC	3 cut(s)	880, 1076, 1300
AasI	GACNNNNNNGTC	1 cut(s)	712
Acc36I	ACCTGC	3 cut(s)	880, 1076, 1300
Acc65I	GGTACC	1 cut(s)	1517
AccB1I	GGYRCC	2 cut(s)	1517, 1762
AccBSI	CCGCTC	2 cut(s)	734, 1880
AccII	CGCG	1 cut(s)	812
AclWI	GGATC	5 cut(s)	22, 1832, 1898, 2349, 2394
AcoI	YGGCCR	1 cut(s)	1272
AcsI	RAATTY	5 cut(s)	682, 727, 865, 1565, 2014
AcuI	CTGAAG	3 cut(s)	54, 885, 1956
AcyI	GRCGYC	1 cut(s)	198
AfaI	GTAC	4 cut(s)	58, 1519, 1550, 1995
AfiI	CCNNNNNNNGG	6 cut(s)	83, 1026, 1624, 2234, 2275, 2276
AflIII	ACRYGT	1 cut(s)	59
AgeI	ACCGGT	1 cut(s)	2234
AjnI	CCWGG	3 cut(s)	1148, 2193, 2285
AjuI	GAANNNNNNNTTGG	1 cut(s)	2481
AloI	GAACNNNNNNTCC	2 cut(s)	30, 62
Alw26I	GTCTC	4 cut(s)	1052, 1560, 1576, 2069
AlwI	GGATC	5 cut(s)	22, 1832, 1898, 2349, 2394
AlwNI	CAGNNNCTG	4 cut(s)	745, 1966, 2168, 2383
Ama87I	CYCGRG	2 cut(s)	787, 1137
AoxI	GGCC	5 cut(s)	74, 157, 1151, 1272, 2196
ApoI	RAATTY	5 cut(s)	682, 727, 865, 1565, 2014
AsiGI	ACCGGT	1 cut(s)	2234
Asp700I	GAANNNNTTC	1 cut(s)	1244
Asp718I	GGTACC	1 cut(s)	1517
AspA2I	CCTAGG	2 cut(s)	1868, 2404
AspS9I	GGNCC	5 cut(s)	74, 158, 1812, 1872, 2197
AsuHPI	GGTGA	6 cut(s)	104, 826, 861, 1015, 2302, 2465
AvaI	CYCGRG	2 cut(s)	787, 1137
AvaII	GGWCC	2 cut(s)	1812, 1872
AvrII	CCTAGG	2 cut(s)	1868, 2404
BaeI	ACNNNNGTAYC	2 cut(s)	1501, 1534
BalI	TGGCCA	1 cut(s)	1274
BanI	GGYRCC	2 cut(s)	1517, 1762
BccI	CCATC	5 cut(s)	89, 716, 1064, 1363, 2444
BciT130I	CCWGG	3 cut(s)	1150, 2195, 2287
BcoDI	GTCTC	4 cut(s)	1052, 1560, 1576, 2069
BfaI	CTAG	2 cut(s)	1869, 2405
BfmI	CTRYAG	3 cut(s)	78, 873, 1125
BfuAI	ACCTGC	3 cut(s)	880, 1076, 1300
BglI	GCCNNNNNGGC	1 cut(s)	1150
BglII	AGATCT	1 cut(s)	2429
BlnI	CCTAGG	2 cut(s)	1868, 2404
BlpI	GCTNAGC	3 cut(s)	735, 1946, 2169
Bme1390I	CCNGG	3 cut(s)	1150, 2195, 2287
Bme18I	GGWCC	2 cut(s)	1812, 1872
BmeT110I	CYCGRG	2 cut(s)	787, 1137
BmgT120I	GGNCC	5 cut(s)	74, 158, 1812, 1872, 2197
BmiI	GGNNCC	7 cut(s)	100, 160, 1519, 1764, 1874, 2199, 2217
BmrFI	CCNGG	3 cut(s)	1150, 2195, 2287
BmrI	ACTGGG	1 cut(s)	2195
BmsI	GCATC	7 cut(s)	363, 1168, 1447, 1510, 1975, 2382, 2389
BmuI	ACTGGG	1 cut(s)	2195
BpmI	CTGGAG	3 cut(s)	1943, 2310, 2334
Bpu10I	CCTNAGC	1 cut(s)	232
Bpu1102I	GCTNAGC	3 cut(s)	735, 1946, 2169
BpuEI	CTTGAG	1 cut(s)	992
BsaBI	GATNNNNATC	3 cut(s)	1698, 2454, 2488
BsaHI	GRCGYC	1 cut(s)	198
BsaI	GGTCTC	1 cut(s)	2069
BsaWI	WCCGGW	1 cut(s)	2234
BsaXI	ACNNNNNCTCC	6 cut(s)	679, 709, 1849, 1864, 1879, 1894
Bsc4I	CCNNNNNNNGG	6 cut(s)	83, 1026, 1624, 2234, 2275, 2276
Bse118I	RCCGGY	2 cut(s)	798, 2234
Bse1I	ACTGG	3 cut(s)	1243, 2201, 2351
Bse8I	GATNNNNATC	3 cut(s)	1698, 2454, 2488
BseBI	CCWGG	3 cut(s)	1150, 2195, 2287
BseGI	GGATG	7 cut(s)	727, 1374, 1501, 1582, 1633, 1990, 2397
BseJI	GATNNNNATC	3 cut(s)	1698, 2454, 2488
BseLI	CCNNNNNNNGG	6 cut(s)	83, 1026, 1624, 2234, 2275, 2276
BseNI	ACTGG	3 cut(s)	1243, 2201, 2351
BseRI	GAGGAG	4 cut(s)	775, 1356, 1773, 2023
BsgI	GTGCAG	1 cut(s)	1104
Bsh1236I	CGCG	1 cut(s)	812
BshFI	GGCC	5 cut(s)	76, 159, 1153, 1274, 2198
BshNI	GGYRCC	2 cut(s)	1517, 1762
BshTI	ACCGGT	1 cut(s)	2234
BsiHKCI	CYCGRG	2 cut(s)	787, 1137
BsiSI	CCGG	3 cut(s)	698, 799, 2235
BslFI	GGGAC	1 cut(s)	1931
BslI	CCNNNNNNNGG	6 cut(s)	83, 1026, 1624, 2234, 2275, 2276
BsmAI	GTCTC	4 cut(s)	1052, 1560, 1576, 2069
BsmFI	GGGAC	1 cut(s)	1931
BsnI	GGCC	5 cut(s)	76, 159, 1153, 1274, 2198
Bso31I	GGTCTC	1 cut(s)	2069
BsoBI	CYCGRG	2 cut(s)	787, 1137
Bsp1407I	TGTACA	1 cut(s)	1993
Bsp143I	GATC	7 cut(s)	14, 1837, 1903, 2341, 2386, 2429, 2455
Bsp1720I	GCTNAGC	3 cut(s)	735, 1946, 2169
BspANI	GGCC	5 cut(s)	76, 159, 1153, 1274, 2198
BspFNI	CGCG	1 cut(s)	812
BspLI	GGNNCC	7 cut(s)	100, 160, 1519, 1764, 1874, 2199, 2217
BspMAI	CTGCAG	1 cut(s)	877
BspMI	ACCTGC	3 cut(s)	880, 1076, 1300
BspPI	GGATC	5 cut(s)	22, 1832, 1898, 2349, 2394
BspT107I	GGYRCC	2 cut(s)	1517, 1762
BspTNI	GGTCTC	1 cut(s)	2069
BsrBI	CCGCTC	2 cut(s)	734, 1880
BsrFI	RCCGGY	2 cut(s)	798, 2234
BsrGI	TGTACA	1 cut(s)	1993
BsrI	ACTGG	3 cut(s)	1243, 2201, 2351
BssAI	RCCGGY	2 cut(s)	798, 2234
BssMI	GATC	7 cut(s)	14, 1837, 1903, 2341, 2386, 2429, 2455
BssNI	GRCGYC	1 cut(s)	198
BssT1I	CCWWGG	7 cut(s)	273, 1233, 1275, 1618, 1868, 1893, 2404
Bst2UI	CCWGG	3 cut(s)	1150, 2195, 2287
Bst4CI	ACNGT	3 cut(s)	82, 709, 759
Bst6I	CTCTTC	5 cut(s)	1001, 1217, 2030, 2111, 2265
BstACI	GRCGYC	1 cut(s)	198
BstAPI	GCANNNNNTGC	1 cut(s)	745
BstAUI	TGTACA	1 cut(s)	1993
BstC8I	GCNNGC	3 cut(s)	980, 1272, 2154
BstDSI	CCRYGG	1 cut(s)	810
BstENI	CCTNNNNNAGG	1 cut(s)	81
BstF5I	GGATG	7 cut(s)	727, 1374, 1501, 1582, 1633, 1990, 2397
BstFNI	CGCG	1 cut(s)	812
BstKTI	GATC	7 cut(s)	17, 1840, 1906, 2344, 2389, 2432, 2458
BstMAI	GTCTC	4 cut(s)	1052, 1560, 1576, 2069
BstMBI	GATC	7 cut(s)	14, 1837, 1903, 2341, 2386, 2429, 2455
BstNI	CCWGG	3 cut(s)	1150, 2195, 2287
BstNSI	RCATGY	1 cut(s)	63
BstSCI	CCNGG	3 cut(s)	1148, 2193, 2285
BstSFI	CTRYAG	3 cut(s)	78, 873, 1125
BstUI	CGCG	1 cut(s)	812
BstX2I	RGATCY	4 cut(s)	14, 1903, 2341, 2429
BstYI	RGATCY	4 cut(s)	14, 1903, 2341, 2429
BsuRI	GGCC	5 cut(s)	76, 159, 1153, 1274, 2198
BtgI	CCRYGG	1 cut(s)	810
BtsCI	GGATG	7 cut(s)	727, 1374, 1501, 1582, 1633, 1990, 2397
BtsI	GCAGTG	3 cut(s)	225, 837, 2337
BtsIMutI	CAGTG	5 cut(s)	225, 837, 1068, 2337, 2358
BveI	ACCTGC	3 cut(s)	880, 1076, 1300
Cac8I	GCNNGC	3 cut(s)	980, 1272, 2154
CaiI	CAGNNNCTG	4 cut(s)	745, 1966, 2168, 2383
Cfr10I	RCCGGY	2 cut(s)	798, 2234
Cfr13I	GGNCC	5 cut(s)	74, 158, 1812, 1872, 2197
Cfr42I	CCGCGG	1 cut(s)	813
CseI	GACGC	2 cut(s)	206, 2053
Csp6I	GTAC	4 cut(s)	57, 1518, 1549, 1994
CspAI	ACCGGT	1 cut(s)	2234
CviAII	CATG	9 cut(s)	60, 1334, 1430, 1603, 1634, 1639, 1855, 1921, 2033
CviQI	GTAC	4 cut(s)	57, 1518, 1549, 1994
DpnI	GATC	7 cut(s)	16, 1839, 1905, 2343, 2388, 2431, 2457
DpnII	GATC	7 cut(s)	14, 1837, 1903, 2341, 2386, 2429, 2455
DrdI	GACNNNNNNGTC	1 cut(s)	712
DseDI	GACNNNNNNGTC	1 cut(s)	712
EaeI	YGGCCR	1 cut(s)	1272
Eam1104I	CTCTTC	5 cut(s)	1001, 1217, 2030, 2111, 2265
EarI	CTCTTC	5 cut(s)	1001, 1217, 2030, 2111, 2265
EciI	GGCGGA	1 cut(s)	235
Eco130I	CCWWGG	7 cut(s)	273, 1233, 1275, 1618, 1868, 1893, 2404
Eco147I	AGGCCT	1 cut(s)	1153
Eco31I	GGTCTC	1 cut(s)	2069
Eco47I	GGWCC	2 cut(s)	1812, 1872
Eco57I	CTGAAG	3 cut(s)	54, 885, 1956
Eco88I	CYCGRG	2 cut(s)	787, 1137
EcoNI	CCTNNNNNAGG	1 cut(s)	81
EcoO109I	RGGNCCY	4 cut(s)	74, 158, 1872, 2197
EcoRI	GAATTC	4 cut(s)	682, 727, 865, 2014
EcoRII	CCWGG	3 cut(s)	1148, 2193, 2285
EcoT14I	CCWWGG	7 cut(s)	273, 1233, 1275, 1618, 1868, 1893, 2404
ErhI	CCWWGG	7 cut(s)	273, 1233, 1275, 1618, 1868, 1893, 2404
FaeI	CATG	9 cut(s)	63, 1337, 1433, 1606, 1637, 1642, 1858, 1924, 2036
FaqI	GGGAC	1 cut(s)	1931
FatI	CATG	9 cut(s)	59, 1333, 1429, 1602, 1633, 1638, 1854, 1920, 2032
FauI	CCCGC	4 cut(s)	817, 1095, 1885, 2388
FokI	GGATG	7 cut(s)	734, 1381, 1488, 1589, 1640, 1997, 2404
FspBI	CTAG	2 cut(s)	1869, 2405
GsuI	CTGGAG	3 cut(s)	1943, 2310, 2334
HaeIII	GGCC	5 cut(s)	76, 159, 1153, 1274, 2198
HapII	CCGG	3 cut(s)	698, 799, 2235
HgaI	GACGC	2 cut(s)	206, 2053
Hin1I	GRCGYC	1 cut(s)	198
Hin1II	CATG	9 cut(s)	63, 1337, 1433, 1606, 1637, 1642, 1858, 1924, 2036
HincII	GTYRAC	1 cut(s)	1108
HindII	GTYRAC	1 cut(s)	1108
HindIII	AAGCTT	6 cut(s)	147, 917, 968, 1466, 1943, 2462
HpaI	GTTAAC	1 cut(s)	1108
HpaII	CCGG	3 cut(s)	698, 799, 2235
HphI	GGTGA	6 cut(s)	104, 826, 861, 1015, 2302, 2465
Hpy166II	GTNNAC	4 cut(s)	120, 391, 1108, 2053
Hpy8I	GTNNAC	4 cut(s)	120, 391, 1108, 2053
HpyCH4III	ACNGT	3 cut(s)	82, 709, 759
HpyCH4IV	ACGT	9 cut(s)	387, 411, 438, 465, 492, 519, 546, 573, 600
HpyCH4V	TGCA	9 cut(s)	621, 875, 1085, 1159, 1395, 1463, 1477, 2152, 2207
HpySE526I	ACGT	9 cut(s)	387, 411, 438, 465, 492, 519, 546, 573, 600
Hsp92I	GRCGYC	1 cut(s)	198
Hsp92II	CATG	9 cut(s)	63, 1337, 1433, 1606, 1637, 1642, 1858, 1924, 2036
KpnI	GGTACC	1 cut(s)	1521
KspAI	GTTAAC	1 cut(s)	1108
KspI	CCGCGG	1 cut(s)	813
Kzo9I	GATC	7 cut(s)	14, 1837, 1903, 2341, 2386, 2429, 2455
LmnI	GCTCC	4 cut(s)	98, 1885, 2086, 2329
LweI	GCATC	7 cut(s)	363, 1168, 1447, 1510, 1975, 2382, 2389
MaeI	CTAG	2 cut(s)	1869, 2405
MaeII	ACGT	9 cut(s)	387, 411, 438, 465, 492, 519, 546, 573, 600
MaeIII	GTNAC	4 cut(s)	814, 1301, 2101, 2353
MalI	GATC	7 cut(s)	16, 1839, 1905, 2343, 2388, 2431, 2457
MbiI	CCGCTC	2 cut(s)	734, 1880
MboI	GATC	7 cut(s)	14, 1837, 1903, 2341, 2386, 2429, 2455
MboII	GAAGA	8 cut(s)	178, 1018, 1234, 1730, 2017, 2128, 2252, 2336
MflI	RGATCY	4 cut(s)	14, 1903, 2341, 2429
MlsI	TGGCCA	1 cut(s)	1274
MluNI	TGGCCA	1 cut(s)	1274
MlyI	GAGTC	6 cut(s)	209, 776, 1697, 1826, 1972, 2350
MmeI	TCCRAC	2 cut(s)	842, 1766
Mox20I	TGGCCA	1 cut(s)	1274
MroXI	GAANNNNTTC	1 cut(s)	1244
MscI	TGGCCA	1 cut(s)	1274
MseI	TTAA	7 cut(s)	915, 921, 1107, 1443, 1524, 1734, 2412
MslI	CAYNNNNRTG	3 cut(s)	386, 1428, 2037
Msp20I	TGGCCA	1 cut(s)	1274
MspA1I	CMGCKG	3 cut(s)	745, 812, 1165
MspI	CCGG	3 cut(s)	698, 799, 2235
MspR9I	CCNGG	3 cut(s)	1150, 2195, 2287
MvaI	CCWGG	3 cut(s)	1150, 2195, 2287
MvnI	CGCG	1 cut(s)	812
NdeII	GATC	7 cut(s)	14, 1837, 1903, 2341, 2386, 2429, 2455
NlaIII	CATG	9 cut(s)	63, 1337, 1433, 1606, 1637, 1642, 1858, 1924, 2036
NlaIV	GGNNCC	7 cut(s)	100, 160, 1519, 1764, 1874, 2199, 2217
NmuCI	GTSAC	2 cut(s)	814, 2353
NspI	RCATGY	1 cut(s)	63
PaeR7I	CTCGAG	2 cut(s)	787, 1137
PaqCI	CACCTGC	3 cut(s)	880, 1076, 1300
PceI	AGGCCT	1 cut(s)	1153
PciI	ACATGT	1 cut(s)	59
PcsI	WCGNNNNNNNCGW	8 cut(s)	192, 417, 444, 471, 498, 525, 552, 579
PdmI	GAANNNNTTC	1 cut(s)	1244
PfeI	GAWTC	4 cut(s)	7, 1285, 2335, 2489
PinAI	ACCGGT	1 cut(s)	2234
PleI	GAGTC	6 cut(s)	209, 776, 1696, 1825, 1971, 2350
PpsI	GAGTC	6 cut(s)	209, 776, 1696, 1825, 1971, 2350
PpuMI	RGGWCCY	1 cut(s)	1872
PscI	ACATGT	1 cut(s)	59
PsiI	TTATAA	1 cut(s)	2003
Psp5II	RGGWCCY	1 cut(s)	1872
Psp6I	CCWGG	3 cut(s)	1148, 2193, 2285
PspGI	CCWGG	3 cut(s)	1148, 2193, 2285
PspN4I	GGNNCC	7 cut(s)	100, 160, 1519, 1764, 1874, 2199, 2217
PspPI	GGNCC	5 cut(s)	74, 158, 1812, 1872, 2197
PspPPI	RGGWCCY	1 cut(s)	1872
PspXI	VCTCGAGB	1 cut(s)	787
PstI	CTGCAG	1 cut(s)	877
PstNI	CAGNNNCTG	4 cut(s)	745, 1966, 2168, 2383
PsuI	RGATCY	4 cut(s)	14, 1903, 2341, 2429
PvuII	CAGCTG	2 cut(s)	745, 1165
RsaI	GTAC	4 cut(s)	58, 1519, 1550, 1995
RsaNI	GTAC	4 cut(s)	57, 1518, 1549, 1994
RseI	CAYNNNNRTG	3 cut(s)	386, 1428, 2037
SacII	CCGCGG	1 cut(s)	813
SaqAI	TTAA	7 cut(s)	915, 921, 1107, 1443, 1524, 1734, 2412
Sau3AI	GATC	7 cut(s)	14, 1837, 1903, 2341, 2386, 2429, 2455
Sau96I	GGNCC	5 cut(s)	74, 158, 1812, 1872, 2197
SchI	GAGTC	6 cut(s)	209, 776, 1697, 1826, 1972, 2350
ScrFI	CCNGG	3 cut(s)	1150, 2195, 2287
SfaNI	GCATC	7 cut(s)	363, 1168, 1447, 1510, 1975, 2382, 2389
SfcI	CTRYAG	3 cut(s)	78, 873, 1125
Sfr274I	CTCGAG	2 cut(s)	787, 1137
Sfr303I	CCGCGG	1 cut(s)	813
SgrBI	CCGCGG	1 cut(s)	813
SinI	GGWCC	2 cut(s)	1812, 1872
SlaI	CTCGAG	2 cut(s)	787, 1137
SmiMI	CAYNNNNRTG	3 cut(s)	386, 1428, 2037
SmlI	CTYRAG	3 cut(s)	787, 971, 1137
SmoI	CTYRAG	3 cut(s)	787, 971, 1137
SseBI	AGGCCT	1 cut(s)	1153
SspI	AATATT	1 cut(s)	1662
SspMI	CTAG	2 cut(s)	1869, 2405
StuI	AGGCCT	1 cut(s)	1153
StyD4I	CCNGG	3 cut(s)	1148, 2193, 2285
StyI	CCWWGG	7 cut(s)	273, 1233, 1275, 1618, 1868, 1893, 2404
TaaI	ACNGT	3 cut(s)	82, 709, 759
TaiI	ACGT	9 cut(s)	390, 414, 441, 468, 495, 522, 549, 576, 603
TatI	WGTACW	1 cut(s)	1993
TauI	GCSGC	2 cut(s)	239, 257
TfiI	GAWTC	4 cut(s)	7, 1285, 2335, 2489
Tru1I	TTAA	7 cut(s)	915, 921, 1107, 1443, 1524, 1734, 2412
Tru9I	TTAA	7 cut(s)	915, 921, 1107, 1443, 1524, 1734, 2412
TscAI	CASTG	5 cut(s)	232, 837, 1068, 2337, 2358
TseFI	GTSAC	2 cut(s)	814, 2353
Tsp45I	GTSAC	2 cut(s)	814, 2353
TspDTI	ATGAA	7 cut(s)	645, 1433, 1461, 1622, 2007, 2055, 2258
TspGWI	ACGGA	2 cut(s)	137, 1165
TspRI	CASTG	5 cut(s)	232, 837, 1068, 2337, 2358
VpaK11BI	GGWCC	2 cut(s)	1812, 1872
XagI	CCTNNNNNAGG	1 cut(s)	81
XapI	RAATTY	5 cut(s)	682, 727, 865, 1565, 2014
XceI	RCATGY	1 cut(s)	63
XhoI	CTCGAG	2 cut(s)	787, 1137
XmaJI	CCTAGG	2 cut(s)	1868, 2404
XmnI	GAANNNNTTC	1 cut(s)	1244
XspI	CTAG	2 cut(s)	1869, 2405

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.