Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr4

Orthogroup ID

OG0004180

Physical Location & Seq

Genomic Coordinates Forward (+)

45493594 .. 45495929

Gene Structure 2336 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000019045

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2037 bp

ATGGCTTCGGGGCCTATAGTTGGAGAAGGTGATGGAACCAGAGAGAAGCAGAGGTACTCGGAAAGCAAGGTCTATACTCGAAAAGCTTTCAAAGGCCCCAAGAAAAACCTCAACAACGCCAAAACAAACTCTACCACCGCAACCACCACCACCGCCTTAGCCGCCCCGACCGCCACCGCCACCGCCAACCACGAGAAGAGTAACGGCGAGAAGAAGGACGAGGACAACAGGAATAACAAGAATGACAATTCGACTCAAGCTCCAGCTGAGGTGATTGGTTTGGAGGATGGGAATTCAGCTCAGCCTCCAGCTCCGGTTTCCGAGGATGGGAATTCAGCTCAGCGGCCAGCTCAGGCGTCTGAAGATGGGAATTCTACCCTGCCGCCGCAACAGCAGCAGTCGGTTTTGCGGGTTGAGGCAGCCTCAGACGACTCCTCGAGCCTGAACCGGCAAGAGCCTGCTGCGGCGGTGGTGGCACCCGCCACTCAGGATACACCTGCAGAGAATGGGGTTTCCAAACCGGAGTCGGACAGCCGAGTTAAGATCAATTTGGCTTCGAGGTCGAAGCAAGAGGTGCGTGAGCTTAGAAGGAAGCTTGAGAGTGAACTGGATATGGTTCGAGGTTTGGTGAAGAAGATTGAGACCAAGCAGGGGCAGATTGGTGGGTTAAGTTTCCCCCATGTTTCTGCAAATGATGGGGTTAATAATAATGTCATGTTGAGGCGGGTTCACTCGGAGGTTGCTTCCGGTGGTATTCCTCGTGAGGCCACTAGGCCTTTGCATCAGCTGAGTATATCAGTATTGGAGAATAGTCAGGGAGGGATTGATAACGTTGAGAAAGAGAAGAGAACCCCTAAGGCAAACCAGTTCTACCAAAGTTCTGAGTTTTTGCTGGCCAAGGATAAGTTTCCACCCGCTGAAAGTAACAAGAAGACGAAATTGAATCTGAAGAAGCAGCAAAGTGGAGGAGAGTTGGGGCACAGGTATTCAATGGGCACCAAGTTTTTCAAGAGTTGTAGTTCTTTGCTTGAGAAATTGATGAAACACAAGCATAGTTGGGTGTTTAATGAACCTGTGGATGCCGAAAAGCTTGGTTTGCATGATTATCACATCATTATCAAGAGTCCAATGGACTTGGGTACGATCAAATCCAGGCTGATCAAGAATTGGTACAAGTCTCCCAAAGAATTTGCAGAAGATGTGAGACTTACATTTGACAATGCCATGACCTATAATCCGCCCGGGCAGGATGTTCATGTCATGGCAGAACAGCTAGCCAAGATTTTCGAGGAAAGGTGGGCTATAATAGAGTCAGATTATAATCGTGAGATAAGGTTTGGCTATGATTATGGGACTGGTCTCCCTACACAACCAATACCAAGAAAGGCTCCTCCACCACCACCTGCTCTTGATATGCGAAGGGTCTTGGATAGGTCTGAGTCCATATCACATCATGGTGATCCCAGGCCAAAACCCATGACTAGTACTCCTAGGACCCCTGCTCCGAAGAAGCCTAAGGCAAAAGATCCTCATAAAAGGGACATGACTTATGAAGAGAAACAAAAGCTTAGCACAAGCCTCCAGGGTCTACCTGCAGAGAAGCTAGATACCATTGTACAGATTATTAGGAAAAGGAATTCAGCCGTCTTCCAGCATGATGATGAAATTGAAGTGGACATTGATAGCGTGGATGCTGAGACCCTTTGGGAGCTTGATAGGTATGTAACCAACTATAAGAAGAGTTTGAGCAAACACAAGCGAAAAGCTGAACTTGCTATGCAAGCCAGAACAGAAACTGAGCAGAATGTCCTGCCGCAGGCCCAGGCCCCCAGTGTGGATGAGGTTCCAAAAGAAACCACAACAGATCCAAAGATAGTTTCGTCTTCAACACCTATTCAAAGGGATAACCAGGGTGATAATAGGAGTAGGTCGAGTAGTTCAAGCAGCTCTAGCAGTGATTCTGGATCTTCCTCGAGTGACTCTGATAGTGATAGTTCATCAGACTCTGGATCTGATGCTGGATCGCCAAGGACTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0007275 GO:0007346 GO:0008150 GO:0009292 GO:0009294 GO:0009987 GO:0022622 GO:0032501 GO:0032502 GO:0044764 GO:0045787 GO:0045931 GO:0048364 GO:0048518 GO:0048522 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0051704 GO:0051726 GO:0065007 GO:0099402

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

BET Bromodomain

Protein Analysis

679

Amino Acids

74.71

Weight (kDa)

8.43

Isoelectric Point (pI)

53.75

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Bromodomain	PF00439	339 - 423	6.9e-20	Bromodomain
BET	PF17035	515 - 576	2e-22	Bromodomain extra-terminal - transcription regulation

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004180)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G06230 AT1G06230 AT1G06230 AT1G06230
fragaria_vesca	FvH4_6g27070 FvH4_6g27070 FvH4_6g27070 FvH4_6g27070 FvH4_6g27070
malus_domestica	MD09G1240500.v1.1 MD17G1233300.v1.1
prunus_persica	Prupe.3G124500_v2.0.a1 Prupe.3G124500_v2.0.a1 Prupe.3G124500_v2.0.a1 Prupe.3G124500_v2.0.a1 Prupe.3G124500_v2.0.a1 Prupe.3G124500_v2.0.a1 Prupe.3G124500_v2.0.a1 Prupe.3G124500_v2.0.a1 Prupe.3G124500_v2.0.a1 Prupe.3G124500_v2.0.a1
pyrus_communis	pycom09g15900 pycom17g23630
rosa_chinensis	RchiOBHm_Chr2g0129031
rosa_laevigata	RLG00000019045
rosa_multiflora	Rmu_sc0009747.1_g000004
rosa_rugosa	Rorug02G0283500 Rorug02G0283500
rosa_samantha	Rh2AG336000 Rh2BG344000 Rh2CG322900 Rh2DG360600
rosa_wichuraiana	Rw2G027240

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1320
AarI	CACCTGC	2 cut(s)	505, 1411
Acc36I	ACCTGC	3 cut(s)	505, 1411, 1600
AccB1I	GGYRCC	2 cut(s)	475, 995
AccI	GTMKAC	1 cut(s)	1588
AclI	AACGTT	1 cut(s)	831
AclWI	GGATC	6 cut(s)	1454, 1520, 1859, 1972, 2017, 2029
AcoI	YGGCCR	2 cut(s)	344, 894
AcsI	RAATTY	5 cut(s)	292, 331, 370, 1187, 1636
AcuI	CTGAAG	2 cut(s)	381, 968
AcyI	GRCGYC	1 cut(s)	356
AfaI	GTAC	5 cut(s)	56, 1141, 1172, 1486, 1617
AfiI	CCNNNNNNNGG	5 cut(s)	20, 327, 651, 1816, 1834
AgsI	TTSAA	8 cut(s)	91, 943, 990, 1009, 1670, 1887, 1898, 1941
AhlI	ACTAGT	1 cut(s)	1481
AjnI	CCWGG	5 cut(s)	1151, 1463, 1581, 1821, 1908
AjuI	GAANNNNNNNTTGG	2 cut(s)	1861, 1893
Alw26I	GTCTC	5 cut(s)	635, 1182, 1198, 1364, 1691
AlwI	GGATC	6 cut(s)	1454, 1520, 1859, 1972, 2017, 2029
AlwNI	CAGNNNCTG	2 cut(s)	1796, 2006
Ama87I	CYCGRG	3 cut(s)	436, 1241, 1972
AoxI	GGCC	9 cut(s)	11, 94, 344, 765, 773, 894, 1466, 1818, 1824
ApeKI	GCWGC	5 cut(s)	394, 419, 461, 955, 1944
ApoI	RAATTY	5 cut(s)	292, 331, 370, 1187, 1636
AspA2I	CCTAGG	1 cut(s)	1490
AspS9I	GGNCC	5 cut(s)	11, 95, 1494, 1819, 1825
AsuC2I	CCSGG	2 cut(s)	1242, 1243
AsuHPI	GGTGA	5 cut(s)	41, 283, 640, 1469, 1925
AsuNHI	GCTAGC	1 cut(s)	1273
AvaI	CYCGRG	3 cut(s)	436, 1241, 1972
AvaII	GGWCC	1 cut(s)	1494
AvrII	CCTAGG	1 cut(s)	1490
AxyI	CCTNAGG	2 cut(s)	855, 1515
BaeGI	GKGCMC	2 cut(s)	981, 998
BaeI	ACNNNNGTAYC	2 cut(s)	1599, 1632
BalI	TGGCCA	1 cut(s)	896
BanI	GGYRCC	2 cut(s)	475, 995
BarI	GAAGNNNNNNTAC	2 cut(s)	38, 70
BauI	CACGAG	2 cut(s)	191, 759
BbsI	GAAGAC	3 cut(s)	938, 1639, 1875
BbvCI	CCTCAGC	1 cut(s)	267
BbvI	GCAGC	5 cut(s)	406, 431, 448, 967, 1956
BccI	CCATC	5 cut(s)	26, 281, 320, 359, 689
BceAI	ACGGC	2 cut(s)	220, 1628
BciT130I	CCWGG	5 cut(s)	1153, 1465, 1583, 1823, 1910
BciVI	GTATCC	1 cut(s)	484
BclI	TGATCA	1 cut(s)	1158
BcnI	CCSGG	2 cut(s)	1242, 1243
BcoDI	GTCTC	5 cut(s)	635, 1182, 1198, 1364, 1691
BcuI	ACTAGT	1 cut(s)	1481
BfaI	CTAG	6 cut(s)	771, 1274, 1482, 1491, 1604, 1950
BfmI	CTRYAG	3 cut(s)	15, 498, 1593
BfuAI	ACCTGC	3 cut(s)	505, 1411, 1600
BfuI	GTATCC	1 cut(s)	484
BlnI	CCTAGG	1 cut(s)	1490
BlpI	GCTNAGC	3 cut(s)	300, 339, 1568
BmcAI	AGTACT	1 cut(s)	1486
Bme1390I	CCNGG	7 cut(s)	1153, 1242, 1243, 1465, 1583, 1823, 1910
Bme18I	GGWCC	1 cut(s)	1494
BmeT110I	CYCGRG	3 cut(s)	436, 1241, 1972
BmgT120I	GGNCC	5 cut(s)	11, 95, 1494, 1819, 1825
BmiI	GGNNCC	9 cut(s)	12, 37, 97, 477, 997, 1389, 1496, 1827, 1845
BmrFI	CCNGG	7 cut(s)	1153, 1242, 1243, 1465, 1583, 1823, 1910
BmrI	ACTGGG	1 cut(s)	1824
BmsI	GCATC	4 cut(s)	790, 1069, 1681, 2005
BmtI	GCTAGC	1 cut(s)	1277
BmuI	ACTGGG	1 cut(s)	1824
BpiI	GAAGAC	3 cut(s)	938, 1639, 1875
BplI	GAGNNNNNCTC	2 cut(s)	407, 439
BpmI	CTGGAG	3 cut(s)	246, 291, 1565
Bpu10I	CCTNAGC	3 cut(s)	157, 267, 351
Bpu1102I	GCTNAGC	3 cut(s)	300, 339, 1568
BpuEI	CTTGAG	3 cut(s)	240, 617, 1049
BpuMI	CCSGG	2 cut(s)	1242, 1243
BsaBI	GATNNNNATC	1 cut(s)	1320
BsaHI	GRCGYC	1 cut(s)	356
BsaI	GGTCTC	3 cut(s)	635, 1364, 1691
BsaJI	CCNNGG	9 cut(s)	321, 897, 1241, 1463, 1490, 1582, 1821, 1909, 2027
BsaWI	WCCGGW	3 cut(s)	313, 520, 746
BsaXI	ACNNNNNCTCC	6 cut(s)	244, 274, 1471, 1486, 1501, 1516
Bsc4I	CCNNNNNNNGG	5 cut(s)	20, 327, 651, 1816, 1834
Bse118I	RCCGGY	1 cut(s)	447
Bse1I	ACTGG	4 cut(s)	612, 865, 1360, 1830
Bse21I	CCTNAGG	2 cut(s)	855, 1515
Bse8I	GATNNNNATC	1 cut(s)	1320
BseBI	CCWGG	5 cut(s)	1153, 1465, 1583, 1823, 1910
BseDI	CCNNGG	9 cut(s)	321, 897, 1241, 1463, 1490, 1582, 1821, 1909, 2027
BseGI	GGATG	6 cut(s)	292, 331, 1084, 1255, 1696, 1843
BseJI	GATNNNNATC	1 cut(s)	1320
BseLI	CCNNNNNNNGG	5 cut(s)	20, 327, 651, 1816, 1834
BseNI	ACTGG	4 cut(s)	612, 865, 1360, 1830
BseRI	GAGGAG	3 cut(s)	424, 981, 1380
BseSI	GKGCMC	2 cut(s)	981, 998
BseXI	GCAGC	5 cut(s)	406, 431, 448, 967, 1956
Bsh1285I	CGRYCG	1 cut(s)	171
BshFI	GGCC	9 cut(s)	13, 96, 346, 767, 775, 896, 1468, 1820, 1826
BshNI	GGYRCC	2 cut(s)	475, 995
BsiEI	CGRYCG	1 cut(s)	171
BsiHKCI	CYCGRG	3 cut(s)	436, 1241, 1972
BsiSI	CCGG	5 cut(s)	314, 448, 521, 747, 1242
BslFI	GGGAC	2 cut(s)	1366, 1553
BslI	CCNNNNNNNGG	5 cut(s)	20, 327, 651, 1816, 1834
BsmAI	GTCTC	5 cut(s)	635, 1182, 1198, 1364, 1691
BsmFI	GGGAC	2 cut(s)	1366, 1553
BsnI	GGCC	9 cut(s)	13, 96, 346, 767, 775, 896, 1468, 1820, 1826
Bso31I	GGTCTC	3 cut(s)	635, 1364, 1691
BsoBI	CYCGRG	3 cut(s)	436, 1241, 1972
Bsp1286I	GDGCHC	2 cut(s)	981, 998
Bsp1407I	TGTACA	1 cut(s)	1615
Bsp143I	GATC	9 cut(s)	543, 1143, 1158, 1459, 1525, 1864, 1964, 2009, 2021
Bsp1720I	GCTNAGC	3 cut(s)	300, 339, 1568
BspANI	GGCC	9 cut(s)	13, 96, 346, 767, 775, 896, 1468, 1820, 1826
BspLI	GGNNCC	9 cut(s)	12, 37, 97, 477, 997, 1389, 1496, 1827, 1845
BspMAI	CTGCAG	2 cut(s)	502, 1597
BspMI	ACCTGC	3 cut(s)	505, 1411, 1600
BspOI	GCTAGC	1 cut(s)	1277
BspPI	GGATC	6 cut(s)	1454, 1520, 1859, 1972, 2017, 2029
BspT107I	GGYRCC	2 cut(s)	475, 995
BspTNI	GGTCTC	3 cut(s)	635, 1364, 1691
BsrFI	RCCGGY	1 cut(s)	447
BsrGI	TGTACA	1 cut(s)	1615
BsrI	ACTGG	4 cut(s)	612, 865, 1360, 1830
BssAI	RCCGGY	1 cut(s)	447
BssECI	CCNNGG	9 cut(s)	321, 897, 1241, 1463, 1490, 1582, 1821, 1909, 2027
BssMI	GATC	9 cut(s)	543, 1143, 1158, 1459, 1525, 1864, 1964, 2009, 2021
BssNI	GRCGYC	1 cut(s)	356
BssSI	CACGAG	2 cut(s)	191, 759
BssT1I	CCWWGG	3 cut(s)	897, 1490, 2027
Bst2BI	CACGAG	2 cut(s)	191, 759
Bst2UI	CCWGG	5 cut(s)	1153, 1465, 1583, 1823, 1910
Bst6I	CTCTTC	4 cut(s)	191, 839, 1548, 1733
BstACI	GRCGYC	1 cut(s)	356
BstAPI	GCANNNNNTGC	1 cut(s)	574
BstAUI	TGTACA	1 cut(s)	1615
BstC8I	GCNNGC	6 cut(s)	348, 459, 894, 1275, 1782, 1818
BstENI	CCTNNNNNAGG	1 cut(s)	1814
BstF5I	GGATG	6 cut(s)	292, 331, 1084, 1255, 1696, 1843
BstKTI	GATC	9 cut(s)	546, 1146, 1161, 1462, 1528, 1867, 1967, 2012, 2024
BstMAI	GTCTC	5 cut(s)	635, 1182, 1198, 1364, 1691
BstMBI	GATC	9 cut(s)	543, 1143, 1158, 1459, 1525, 1864, 1964, 2009, 2021
BstMCI	CGRYCG	1 cut(s)	171
BstNI	CCWGG	5 cut(s)	1153, 1465, 1583, 1823, 1910
BstSCI	CCNGG	7 cut(s)	1151, 1240, 1241, 1463, 1581, 1821, 1908
BstSFI	CTRYAG	3 cut(s)	15, 498, 1593
BstSLI	GKGCMC	2 cut(s)	981, 998
BstV1I	GCAGC	5 cut(s)	406, 431, 448, 967, 1956
BstV2I	GAAGAC	3 cut(s)	938, 1639, 1875
BstX2I	RGATCY	4 cut(s)	1525, 1864, 1964, 2009
BstYI	RGATCY	4 cut(s)	1525, 1864, 1964, 2009
Bsu36I	CCTNAGG	2 cut(s)	855, 1515
BsuI	GTATCC	1 cut(s)	484
BsuRI	GGCC	9 cut(s)	13, 96, 346, 767, 775, 896, 1468, 1820, 1826
BtsCI	GGATG	6 cut(s)	292, 331, 1084, 1255, 1696, 1843
BtsI	GCAGTG	1 cut(s)	1960
BtsIMutI	CAGTG	2 cut(s)	1837, 1960
BveI	ACCTGC	3 cut(s)	505, 1411, 1600
Cac8I	GCNNGC	6 cut(s)	348, 459, 894, 1275, 1782, 1818
CaiI	CAGNNNCTG	2 cut(s)	1796, 2006
Cfr10I	RCCGGY	1 cut(s)	447
Cfr13I	GGNCC	5 cut(s)	11, 95, 1494, 1819, 1825
Cfr9I	CCCGGG	1 cut(s)	1241
CseI	GACGC	1 cut(s)	345
Csp6I	GTAC	5 cut(s)	55, 1140, 1171, 1485, 1616
CviQI	GTAC	5 cut(s)	55, 1140, 1171, 1485, 1616
DpnI	GATC	9 cut(s)	545, 1145, 1160, 1461, 1527, 1866, 1966, 2011, 2023
DpnII	GATC	9 cut(s)	543, 1143, 1158, 1459, 1525, 1864, 1964, 2009, 2021
EaeI	YGGCCR	2 cut(s)	344, 894
Eam1104I	CTCTTC	4 cut(s)	191, 839, 1548, 1733
EarI	CTCTTC	4 cut(s)	191, 839, 1548, 1733
EciI	GGCGGA	1 cut(s)	1227
Eco130I	CCWWGG	3 cut(s)	897, 1490, 2027
Eco147I	AGGCCT	1 cut(s)	775
Eco31I	GGTCTC	3 cut(s)	635, 1364, 1691
Eco47I	GGWCC	1 cut(s)	1494
Eco57I	CTGAAG	2 cut(s)	381, 968
Eco81I	CCTNAGG	2 cut(s)	855, 1515
Eco88I	CYCGRG	3 cut(s)	436, 1241, 1972
EcoNI	CCTNNNNNAGG	1 cut(s)	1814
EcoO109I	RGGNCCY	4 cut(s)	11, 95, 1494, 1825
EcoRI	GAATTC	4 cut(s)	292, 331, 370, 1636
EcoRII	CCWGG	5 cut(s)	1151, 1463, 1581, 1821, 1908
EcoT14I	CCWWGG	3 cut(s)	897, 1490, 2027
ErhI	CCWWGG	3 cut(s)	897, 1490, 2027
FalI	AAGNNNNNCTT	2 cut(s)	1755, 1787
FaqI	GGGAC	2 cut(s)	1366, 1553
FauI	CCCGC	4 cut(s)	402, 487, 717, 922
FbaI	TGATCA	1 cut(s)	1158
FblI	GTMKAC	1 cut(s)	1588
FokI	GGATG	6 cut(s)	299, 338, 1091, 1262, 1703, 1850
FspBI	CTAG	6 cut(s)	771, 1274, 1482, 1491, 1604, 1950
GsuI	CTGGAG	3 cut(s)	246, 291, 1565
HaeIII	GGCC	9 cut(s)	13, 96, 346, 767, 775, 896, 1468, 1820, 1826
HapII	CCGG	5 cut(s)	314, 448, 521, 747, 1242
HgaI	GACGC	1 cut(s)	345
Hin1I	GRCGYC	1 cut(s)	356
HindIII	AAGCTT	4 cut(s)	84, 593, 1088, 1565
HpaII	CCGG	5 cut(s)	314, 448, 521, 747, 1242
HphI	GGTGA	5 cut(s)	41, 283, 640, 1469, 1925
Hpy166II	GTNNAC	4 cut(s)	605, 730, 1589, 1675
Hpy188III	TCNNGA	9 cut(s)	488, 761, 1009, 1120, 1162, 1325, 1409, 1962, 2007
Hpy8I	GTNNAC	4 cut(s)	605, 730, 1589, 1675
HpyAV	CCTTC	4 cut(s)	20, 208, 582, 1413
HpyCH4IV	ACGT	1 cut(s)	831
HpyCH4V	TGCA	7 cut(s)	500, 689, 781, 1099, 1193, 1595, 1780
HpySE526I	ACGT	1 cut(s)	831
Hsp92I	GRCGYC	1 cut(s)	356
Ksp22I	TGATCA	1 cut(s)	1158
Kzo9I	GATC	9 cut(s)	543, 1143, 1158, 1459, 1525, 1864, 1964, 2009, 2021
LmnI	GCTCC	5 cut(s)	265, 316, 1393, 1507, 1708
Lsp1109I	GCAGC	5 cut(s)	406, 431, 448, 967, 1956
LweI	GCATC	4 cut(s)	790, 1069, 1681, 2005
MaeI	CTAG	6 cut(s)	771, 1274, 1482, 1491, 1604, 1950
MaeII	ACGT	1 cut(s)	831
MaeIII	GTNAC	4 cut(s)	200, 923, 1723, 1976
MalI	GATC	9 cut(s)	545, 1145, 1160, 1461, 1527, 1866, 1966, 2011, 2023
MboI	GATC	9 cut(s)	543, 1143, 1158, 1459, 1525, 1864, 1964, 2009, 2021
MflI	RGATCY	4 cut(s)	1525, 1864, 1964, 2009
MhlI	GDGCHC	2 cut(s)	981, 998
MlsI	TGGCCA	1 cut(s)	896
MluNI	TGGCCA	1 cut(s)	896
MlyI	GAGTC	8 cut(s)	247, 425, 533, 1132, 1319, 1448, 1973, 1997
MmeI	TCCRAC	1 cut(s)	507
Mox20I	TGGCCA	1 cut(s)	896
MscI	TGGCCA	1 cut(s)	896
MseI	TTAA	4 cut(s)	540, 668, 702, 1065
MslI	CAYNNNNRTG	2 cut(s)	1455, 1659
Msp20I	TGGCCA	1 cut(s)	896
MspA1I	CMGCKG	4 cut(s)	266, 343, 787, 917
MspI	CCGG	5 cut(s)	314, 448, 521, 747, 1242
MspR9I	CCNGG	7 cut(s)	1153, 1242, 1243, 1465, 1583, 1823, 1910
MvaI	CCWGG	5 cut(s)	1153, 1465, 1583, 1823, 1910
NciI	CCSGG	2 cut(s)	1242, 1243
NdeII	GATC	9 cut(s)	543, 1143, 1158, 1459, 1525, 1864, 1964, 2009, 2021
NheI	GCTAGC	1 cut(s)	1273
NlaIV	GGNNCC	9 cut(s)	12, 37, 97, 477, 997, 1389, 1496, 1827, 1845
NmeAIII	GCCGAG	1 cut(s)	560
NmuCI	GTSAC	1 cut(s)	1976
PaeR7I	CTCGAG	2 cut(s)	436, 1972
PaqCI	CACCTGC	2 cut(s)	505, 1411
PceI	AGGCCT	1 cut(s)	775
PfeI	GAWTC	2 cut(s)	943, 1958
PleI	GAGTC	8 cut(s)	247, 425, 532, 1131, 1318, 1447, 1973, 1997
PpsI	GAGTC	8 cut(s)	247, 425, 532, 1131, 1318, 1447, 1973, 1997
PpuMI	RGGWCCY	1 cut(s)	1494
PsiI	TTATAA	1 cut(s)	1320
Psp1406I	AACGTT	1 cut(s)	831
Psp5II	RGGWCCY	1 cut(s)	1494
Psp6I	CCWGG	5 cut(s)	1151, 1463, 1581, 1821, 1908
PspGI	CCWGG	5 cut(s)	1151, 1463, 1581, 1821, 1908
PspN4I	GGNNCC	9 cut(s)	12, 37, 97, 477, 997, 1389, 1496, 1827, 1845
PspPI	GGNCC	5 cut(s)	11, 95, 1494, 1819, 1825
PspPPI	RGGWCCY	1 cut(s)	1494
PspXI	VCTCGAGB	2 cut(s)	436, 1972
PstI	CTGCAG	2 cut(s)	502, 1597
PstNI	CAGNNNCTG	2 cut(s)	1796, 2006
PsuI	RGATCY	4 cut(s)	1525, 1864, 1964, 2009
PvuII	CAGCTG	2 cut(s)	266, 787
RsaI	GTAC	5 cut(s)	56, 1141, 1172, 1486, 1617
RsaNI	GTAC	5 cut(s)	55, 1140, 1171, 1485, 1616
RseI	CAYNNNNRTG	2 cut(s)	1455, 1659
SaqAI	TTAA	4 cut(s)	540, 668, 702, 1065
Sau3AI	GATC	9 cut(s)	543, 1143, 1158, 1459, 1525, 1864, 1964, 2009, 2021
Sau96I	GGNCC	5 cut(s)	11, 95, 1494, 1819, 1825
ScaI	AGTACT	1 cut(s)	1486
SchI	GAGTC	8 cut(s)	247, 425, 533, 1132, 1319, 1448, 1973, 1997
ScrFI	CCNGG	7 cut(s)	1153, 1242, 1243, 1465, 1583, 1823, 1910
SduI	GDGCHC	2 cut(s)	981, 998
SfaNI	GCATC	4 cut(s)	790, 1069, 1681, 2005
SfcI	CTRYAG	3 cut(s)	15, 498, 1593
Sfr274I	CTCGAG	2 cut(s)	436, 1972
SinI	GGWCC	1 cut(s)	1494
SlaI	CTCGAG	2 cut(s)	436, 1972
SmaI	CCCGGG	1 cut(s)	1243
SmiMI	CAYNNNNRTG	2 cut(s)	1455, 1659
SmlI	CTYRAG	5 cut(s)	255, 436, 596, 1028, 1972
SmoI	CTYRAG	5 cut(s)	255, 436, 596, 1028, 1972
SpeI	ACTAGT	1 cut(s)	1481
SrfI	GCCCGGGC	1 cut(s)	1243
SseBI	AGGCCT	1 cut(s)	775
SspMI	CTAG	6 cut(s)	771, 1274, 1482, 1491, 1604, 1950
StuI	AGGCCT	1 cut(s)	775
StyD4I	CCNGG	7 cut(s)	1151, 1240, 1241, 1463, 1581, 1821, 1908
StyI	CCWWGG	3 cut(s)	897, 1490, 2027
TaiI	ACGT	1 cut(s)	834
TaqI	TCGA	9 cut(s)	79, 251, 437, 557, 563, 619, 1287, 1931, 1973
TatI	WGTACW	2 cut(s)	1484, 1615
TauI	GCSGC	6 cut(s)	164, 346, 385, 388, 467, 1816
TfiI	GAWTC	2 cut(s)	943, 1958
Tru1I	TTAA	4 cut(s)	540, 668, 702, 1065
Tru9I	TTAA	4 cut(s)	540, 668, 702, 1065
TscAI	CASTG	2 cut(s)	1837, 1960
TseFI	GTSAC	1 cut(s)	1976
TseI	GCWGC	5 cut(s)	394, 419, 461, 955, 1944
Tsp45I	GTSAC	1 cut(s)	1976
TspDTI	ATGAA	6 cut(s)	1055, 1083, 1244, 1566, 1677, 1986
TspMI	CCCGGG	1 cut(s)	1241
TspRI	CASTG	2 cut(s)	1837, 1960
VpaK11BI	GGWCC	1 cut(s)	1494
XagI	CCTNNNNNAGG	1 cut(s)	1814
XapI	RAATTY	5 cut(s)	292, 331, 370, 1187, 1636
XhoI	CTCGAG	2 cut(s)	436, 1972
XmaI	CCCGGG	1 cut(s)	1241
XmaJI	CCTAGG	1 cut(s)	1490
XmiI	GTMKAC	1 cut(s)	1588
XspI	CTAG	6 cut(s)	771, 1274, 1482, 1491, 1604, 1950
ZrmI	AGTACT	1 cut(s)	1486

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.