Prupe.3G124500_v2.0.a1

transcription factor

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp03
Physical Location & Seq
Reverse (-)
11233698 .. 11240180
6483 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.3G124500.6

Sequence Viewer

Length: 2052 bp
ATGGCTTCGGAGCCTATAGTAGGAGAAGGTGATGGAGCCAGAGAGAAGCAGAGGTACACGGAGAGCAAGGTATATACTCGAAAGGCTTTCAAAGGCCCCAAGAAGAAGAGCATCGACAACAACACCACCAAACCCACAGAGGCCAACCCAACAGCCACAACCGCCACCGCCACAACCACCACCGCCGTAACCGCCCCCTCCGTCACCACAACCACCACCGCCGACGACAATAACATCAACAAGAACGACAACCACCACCACGAGAAAGACAACAACATCAACCAGAACGACAACAACAAGAGCGACAAGCAGGATAATAACAAGAAGAATGATGAGAATGAGAATTCGTCCCAGCCTCCTCCGCCTCAGACCATTGCGTCTGAGGAGGGGAATTCCGCTCAGCAGCAGCAGCTCCTTCCGCCGCCTGATGCTGCTGCCTCTGGCGATTCCTCCAGCCTGAACCGGCAAGAGGTGGCCGTGGCAGTGGTGGAACCTGAAAGTCGGGATCCACCTGTGGAAAATGGGCTGGCGAAGGAGGGGCCGGAGAACCGAATGAAGATTAATTTGGCTTCAAGGTCGAAGCAGGAGATGCGTGAGCTTCGGAGGAAGCTTGAGAGTGAGCTTGATATGGTGCGGAGTTTGGTGAAGAGGATTGAGGCCAAACAGGGGCAGATTGGTGGGTTTAATCTCTCCCTTGTAACGAATGAGGGGGTCAATAATAGTAGTGCAGTGCTGAGACGGGTTCACTCTGAGGTTGCTTCGGTTGGTGTTCCCCGTGAAGTTACTAGGCCTTTGCATCAGCTGAGTATCTCAGTGTTGGAGAATAGTCAGGGAATGAGTGATATTGTGGAGAAAGAGAAGAGAACCCCCAAGGCGAACCAGTTCTATCATAATTCTGAGTTTTTGTTGGCTAAGGATAAGTTTCCGCCTGCTGAGAGTAATAAGAAGTCGAAATTGAATGGGAAGAAGCATGGTGGAGGAGATTTAGGGCAAGGGTATGGCATGGGAAGCAAGTTTTTCAAGAGTTGCAGTTCTTTGCTTGAAAAATTGATGAAACACAAGCATGGTTGGGTGTTTAATGAACCTGTTGATGCTGCCAAGCTTGGTTTGCACGATTATCACATCATTATCAAGCACCCAATGGACTTGGGTACCATTAAGTCGAGGCTGAACAAGAATTGGTACAAATCTCCGAAAGAATTTGCAGAGGATGTGAGACTTACATTTCACAATGCCATGACTTATAACCCACAAGGGCAGGATGTTCATGTTATGGCAGAGCAGCTATCCAGGATATTTGAGGACAGGTGGGCTATCATAGAGTCAGATTATAATCGTGAGATGAGGTTTGGATATGATTATGGGGCTAGTCTTCCTACACCTACATCAAGAAAGGCACCTCCACTGCCACCACCTCCTCTTGACATGCGAAGGATTTTGGACAGGTCTGAGTCTATCTCTCATCATGTTGATCCCAAGCCAAAGCCCATGACTATTACTCCTAGAACCCCCGCTCCAAAGAAGCCTAAGGCTAAAGATCCTCATAAAAGGGACATGACTTATGAGGAAAAACAAAAGCTTAGCACAAGCCTCCAGAGTCTACCTTCAGAGAAGCTGGATTCCATTGTACAGATTATTAAGAGGAGGAATTCTGACCTATTCCAGCATGATGATGAAATTGAAGTGGACATTGATAGCGTTGATGTTGAGACCCTGTGGGAGCTTGATAGGTTTGTAACCAACTACAAGAAGAGTTTGAGCAAACACAAGCGGAAAGCTGAAATGGCTATGCAAGCCAGAGCAGAAACTGAGCAGAATGTCCAGCAGCAGATCCAGGACCCCATTGTGGCAGAGGTGCCCAAAGAAACCAAAACAGCAGATGAAAAGATTATTTCTTCTTCAACACCCATTCAAGGGGATAACCAGGGTGATAATAGGAGTAGGTCAAGTAGTTCAAGCAGCTCTAGCAGTGATTCTGGATCTTCCTCTAGTGACTCAGATAGTGATAGTTCGTCAGCATCTGGATCAGATGCGGGGTCGCCGAGGACTTAA

Protein Analysis

684

Amino Acids

75.93

Weight (kDa)

7.35

Isoelectric Point (pI)

55.29

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 1245, 1332
AasI GACNNNNNNGTC 1 cut(s) 376
Acc65I GGTACC 1 cut(s) 1151
AccB1I GGYRCC 3 cut(s) 1151, 1396, 1855
AccBSI CCGCTC 2 cut(s) 398, 1514
AccI GTMKAC 1 cut(s) 1600
AclWI GGATC 7 cut(s) 500, 513, 1466, 1532, 1825, 1987, 2032
AcoI YGGCCR 1 cut(s) 474
AcsI RAATTY 4 cut(s) 343, 391, 1199, 1648
AcuI CTGAAG 1 cut(s) 1590
AfaI GTAC 4 cut(s) 56, 1153, 1184, 1629
AfiI CCNNNNNNNGG 6 cut(s) 20, 469, 666, 1846, 1913, 1914
AgsI TTSAA 9 cut(s) 91, 573, 958, 1021, 1043, 1682, 1902, 1913, 1956
AjnI CCWGG 3 cut(s) 1289, 1833, 1923
AjuI GAANNNNNNNTTGG 2 cut(s) 548, 580
AloI GAACNNNNNNTCC 2 cut(s) 1498, 1530
Alw26I GTCTC 3 cut(s) 730, 1210, 1703
AlwI GGATC 7 cut(s) 500, 513, 1466, 1532, 1825, 1987, 2032
AlwNI CAGNNNCTG 2 cut(s) 1808, 2021
AoxI GGCC 6 cut(s) 94, 141, 474, 539, 657, 788
ApeKI GCWGC 9 cut(s) 403, 406, 409, 431, 434, 1094, 1282, 1825, 1959
ApoI RAATTY 4 cut(s) 343, 391, 1199, 1648
AseI ATTAAT 1 cut(s) 561
Asp700I GAANNNNTTC 1 cut(s) 881
Asp718I GGTACC 1 cut(s) 1151
AspS9I GGNCC 3 cut(s) 95, 539, 1837
AsuHPI GGTGA 4 cut(s) 41, 196, 655, 1940
AvaII GGWCC 1 cut(s) 1837
AxyI CCTNAGG 1 cut(s) 1527
BaeGI GKGCMC 1 cut(s) 1860
BaeI ACNNNNGTAYC 2 cut(s) 1135, 1168
BamHI GGATCC 1 cut(s) 505
BanI GGYRCC 3 cut(s) 1151, 1396, 1855
BarI GAAGNNNNNNTAC 2 cut(s) 38, 70
BauI CACGAG 1 cut(s) 260
BbsI GAAGAC 1 cut(s) 1364
BbvI GCAGC 9 cut(s) 415, 418, 418, 421, 421, 1081, 1294, 1837, 1971
BccI CCATC 1 cut(s) 26
BceAI ACGGC 2 cut(s) 170, 461
BciT130I CCWGG 3 cut(s) 1291, 1835, 1925
BcoDI GTCTC 3 cut(s) 730, 1210, 1703
BfaI CTAG 5 cut(s) 786, 1368, 1503, 1965, 1989
BfmI CTRYAG 1 cut(s) 15
BlpI GCTNAGC 2 cut(s) 399, 1580
Bme1390I CCNGG 3 cut(s) 1291, 1835, 1925
Bme18I GGWCC 1 cut(s) 1837
BmgT120I GGNCC 3 cut(s) 95, 539, 1837
BmrFI CCNGG 3 cut(s) 1291, 1835, 1925
BmsI GCATC 7 cut(s) 120, 418, 579, 805, 1081, 2020, 2027
BpiI GAAGAC 1 cut(s) 1364
BplI GAGNNNNNCTC 2 cut(s) 1442, 1474
BpmI CTGGAG 2 cut(s) 436, 1577
Bpu10I CCTNAGC 1 cut(s) 912
Bpu1102I GCTNAGC 2 cut(s) 399, 1580
BpuEI CTTGAG 1 cut(s) 632
BsaBI GATNNNNATC 1 cut(s) 1332
BsaI GGTCTC 1 cut(s) 1703
BsaJI CCNNGG 4 cut(s) 477, 870, 1924, 2042
BsaXI ACNNNNNCTCC 4 cut(s) 1483, 1498, 1513, 1528
Bsc4I CCNNNNNNNGG 6 cut(s) 20, 469, 666, 1846, 1913, 1914
Bse118I RCCGGY 1 cut(s) 462
Bse1I ACTGG 1 cut(s) 880
Bse21I CCTNAGG 1 cut(s) 1527
Bse3DI GCAATG 1 cut(s) 372
Bse8I GATNNNNATC 1 cut(s) 1332
BseBI CCWGG 3 cut(s) 1291, 1835, 1925
BseDI CCNNGG 4 cut(s) 477, 870, 1924, 2042
BseGI GGATG 2 cut(s) 1216, 1267
BseJI GATNNNNATC 1 cut(s) 1332
BseLI CCNNNNNNNGG 6 cut(s) 20, 469, 666, 1846, 1913, 1914
BseMI GCAATG 1 cut(s) 372
BseNI ACTGG 1 cut(s) 880
BseRI GAGGAG 5 cut(s) 348, 398, 993, 1407, 1657
BseSI GKGCMC 1 cut(s) 1860
BseXI GCAGC 9 cut(s) 415, 418, 418, 421, 421, 1081, 1294, 1837, 1971
BseYI CCCAGC 1 cut(s) 351
BsgI GTGCAG 1 cut(s) 747
BshFI GGCC 6 cut(s) 96, 143, 476, 541, 659, 790
BshNI GGYRCC 3 cut(s) 1151, 1396, 1855
BsiSI CCGG 2 cut(s) 463, 542
BslFI GGGAC 2 cut(s) 334, 1565
BslI CCNNNNNNNGG 6 cut(s) 20, 469, 666, 1846, 1913, 1914
BsmAI GTCTC 3 cut(s) 730, 1210, 1703
BsmBI CGTCTC 1 cut(s) 730
BsmFI GGGAC 2 cut(s) 334, 1565
BsnI GGCC 6 cut(s) 96, 143, 476, 541, 659, 790
Bso31I GGTCTC 1 cut(s) 1703
Bsp1286I GDGCHC 1 cut(s) 1860
Bsp1407I TGTACA 1 cut(s) 1627
Bsp143I GATC 6 cut(s) 505, 1471, 1537, 1830, 1979, 2024
Bsp1720I GCTNAGC 2 cut(s) 399, 1580
BspANI GGCC 6 cut(s) 96, 143, 476, 541, 659, 790
BspPI GGATC 7 cut(s) 500, 513, 1466, 1532, 1825, 1987, 2032
BspQI GCTCTTC 1 cut(s) 101
BspT107I GGYRCC 3 cut(s) 1151, 1396, 1855
BspTNI GGTCTC 1 cut(s) 1703
BsrBI CCGCTC 2 cut(s) 398, 1514
BsrDI GCAATG 1 cut(s) 372
BsrFI RCCGGY 1 cut(s) 462
BsrGI TGTACA 1 cut(s) 1627
BsrI ACTGG 1 cut(s) 880
BssAI RCCGGY 1 cut(s) 462
BssECI CCNNGG 4 cut(s) 477, 870, 1924, 2042
BssMI GATC 6 cut(s) 505, 1471, 1537, 1830, 1979, 2024
BssSI CACGAG 1 cut(s) 260
BssT1I CCWWGG 1 cut(s) 870
Bst2BI CACGAG 1 cut(s) 260
Bst2UI CCWGG 3 cut(s) 1291, 1835, 1925
Bst6I CTCTTC 4 cut(s) 101, 641, 854, 1745
BstAPI GCANNNNNTGC 1 cut(s) 589
BstAUI TGTACA 1 cut(s) 1627
BstC8I GCNNGC 3 cut(s) 528, 930, 1794
BstDSI CCRYGG 1 cut(s) 477
BstENI CCTNNNNNAGG 1 cut(s) 18
BstF5I GGATG 2 cut(s) 1216, 1267
BstKTI GATC 6 cut(s) 508, 1474, 1540, 1833, 1982, 2027
BstMAI GTCTC 3 cut(s) 730, 1210, 1703
BstMBI GATC 6 cut(s) 505, 1471, 1537, 1830, 1979, 2024
BstNI CCWGG 3 cut(s) 1291, 1835, 1925
BstNSI RCATGY 1 cut(s) 1429
BstSCI CCNGG 3 cut(s) 1289, 1833, 1923
BstSFI CTRYAG 1 cut(s) 15
BstSLI GKGCMC 1 cut(s) 1860
BstV1I GCAGC 9 cut(s) 415, 418, 418, 421, 421, 1081, 1294, 1837, 1971
BstV2I GAAGAC 1 cut(s) 1364
BstX2I RGATCY 4 cut(s) 505, 1537, 1830, 1979
BstYI RGATCY 4 cut(s) 505, 1537, 1830, 1979
Bsu36I CCTNAGG 1 cut(s) 1527
BsuRI GGCC 6 cut(s) 96, 143, 476, 541, 659, 790
BtgI CCRYGG 1 cut(s) 477
BtsCI GGATG 2 cut(s) 1216, 1267
BtsI GCAGTG 4 cut(s) 489, 735, 1403, 1975
BtsIMutI CAGTG 5 cut(s) 489, 735, 819, 1403, 1975
Cac8I GCNNGC 3 cut(s) 528, 930, 1794
CaiI CAGNNNCTG 2 cut(s) 1808, 2021
Cfr10I RCCGGY 1 cut(s) 462
Cfr13I GGNCC 3 cut(s) 95, 539, 1837
CseI GACGC 1 cut(s) 366
Csp6I GTAC 4 cut(s) 55, 1152, 1183, 1628
CviQI GTAC 4 cut(s) 55, 1152, 1183, 1628
DpnI GATC 6 cut(s) 507, 1473, 1539, 1832, 1981, 2026
DpnII GATC 6 cut(s) 505, 1471, 1537, 1830, 1979, 2024
DrdI GACNNNNNNGTC 1 cut(s) 376
DseDI GACNNNNNNGTC 1 cut(s) 376
EaeI YGGCCR 1 cut(s) 474
Eam1104I CTCTTC 4 cut(s) 101, 641, 854, 1745
EarI CTCTTC 4 cut(s) 101, 641, 854, 1745
EciI GGCGGA 3 cut(s) 351, 408, 915
Eco130I CCWWGG 1 cut(s) 870
Eco147I AGGCCT 1 cut(s) 790
Eco31I GGTCTC 1 cut(s) 1703
Eco47I GGWCC 1 cut(s) 1837
Eco57I CTGAAG 1 cut(s) 1590
Eco81I CCTNAGG 1 cut(s) 1527
EcoNI CCTNNNNNAGG 1 cut(s) 18
EcoO109I RGGNCCY 2 cut(s) 95, 1837
EcoRI GAATTC 3 cut(s) 343, 391, 1648
EcoRII CCWGG 3 cut(s) 1289, 1833, 1923
EcoT14I CCWWGG 1 cut(s) 870
ErhI CCWWGG 1 cut(s) 870
Esp3I CGTCTC 1 cut(s) 730
FaqI GGGAC 2 cut(s) 334, 1565
FauI CCCGC 2 cut(s) 1519, 2026
FblI GTMKAC 1 cut(s) 1600
FokI GGATG 2 cut(s) 1223, 1274
FspBI CTAG 5 cut(s) 786, 1368, 1503, 1965, 1989
GsaI CCCAGC 1 cut(s) 355
GsuI CTGGAG 2 cut(s) 436, 1577
HaeIII GGCC 6 cut(s) 96, 143, 476, 541, 659, 790
HapII CCGG 2 cut(s) 463, 542
HgaI GACGC 1 cut(s) 366
HindIII AAGCTT 3 cut(s) 608, 1100, 1577
HinfI GANTC 7 cut(s) 446, 1322, 1451, 1597, 1619, 1973, 1994
HpaII CCGG 2 cut(s) 463, 542
HphI GGTGA 4 cut(s) 41, 196, 655, 1940
Hpy166II GTNNAC 4 cut(s) 57, 745, 1601, 1687
Hpy188III TCNNGA 8 cut(s) 503, 1021, 1337, 1389, 1421, 1594, 1977, 2022
Hpy8I GTNNAC 4 cut(s) 57, 745, 1601, 1687
Hpy99I CGWCG 1 cut(s) 227
HpyAV CCTTC 5 cut(s) 20, 425, 526, 1425, 1614
HpyCH4V TGCA 6 cut(s) 728, 796, 1029, 1111, 1205, 1792
KpnI GGTACC 1 cut(s) 1155
Kzo9I GATC 6 cut(s) 505, 1471, 1537, 1830, 1979, 2024
LguI GCTCTTC 1 cut(s) 101
LmnI GCTCC 5 cut(s) 10, 35, 417, 1519, 1720
Lsp1109I GCAGC 9 cut(s) 415, 418, 418, 421, 421, 1081, 1294, 1837, 1971
LweI GCATC 7 cut(s) 120, 418, 579, 805, 1081, 2020, 2027
MaeI CTAG 5 cut(s) 786, 1368, 1503, 1965, 1989
MaeIII GTNAC 6 cut(s) 187, 202, 697, 781, 1735, 1991
MalI GATC 6 cut(s) 507, 1473, 1539, 1832, 1981, 2026
MbiI CCGCTC 2 cut(s) 398, 1514
MboI GATC 6 cut(s) 505, 1471, 1537, 1830, 1979, 2024
MflI RGATCY 4 cut(s) 505, 1537, 1830, 1979
MhlI GDGCHC 1 cut(s) 1860
MlyI GAGTC 4 cut(s) 1331, 1460, 1606, 1988
MmeI TCCRAC 1 cut(s) 798
MroXI GAANNNNTTC 1 cut(s) 881
MseI TTAA 6 cut(s) 561, 684, 1077, 1158, 1638, 2050
MslI CAYNNNNRTG 2 cut(s) 1062, 1671
MspA1I CMGCKG 1 cut(s) 802
MspI CCGG 2 cut(s) 463, 542
MspR9I CCNGG 3 cut(s) 1291, 1835, 1925
MvaI CCWGG 3 cut(s) 1291, 1835, 1925
NdeII GATC 6 cut(s) 505, 1471, 1537, 1830, 1979, 2024
NmuCI GTSAC 2 cut(s) 202, 1991
NspI RCATGY 1 cut(s) 1429
PceI AGGCCT 1 cut(s) 790
PciSI GCTCTTC 1 cut(s) 101
PdmI GAANNNNTTC 1 cut(s) 881
PfeI GAWTC 3 cut(s) 446, 1619, 1973
PfoI TCCNGGA 2 cut(s) 1289, 1833
PleI GAGTC 4 cut(s) 1330, 1459, 1605, 1988
PpsI GAGTC 4 cut(s) 1330, 1459, 1605, 1988
PpuMI RGGWCCY 1 cut(s) 1837
PshBI ATTAAT 1 cut(s) 561
PsiI TTATAA 2 cut(s) 1245, 1332
Psp5II RGGWCCY 1 cut(s) 1837
Psp6I CCWGG 3 cut(s) 1289, 1833, 1923
PspFI CCCAGC 1 cut(s) 351
PspGI CCWGG 3 cut(s) 1289, 1833, 1923
PspPI GGNCC 3 cut(s) 95, 539, 1837
PspPPI RGGWCCY 1 cut(s) 1837
PstNI CAGNNNCTG 2 cut(s) 1808, 2021
PsuI RGATCY 4 cut(s) 505, 1537, 1830, 1979
PvuII CAGCTG 1 cut(s) 802
RsaI GTAC 4 cut(s) 56, 1153, 1184, 1629
RsaNI GTAC 4 cut(s) 55, 1152, 1183, 1628
RseI CAYNNNNRTG 2 cut(s) 1062, 1671
SapI GCTCTTC 1 cut(s) 101
SaqAI TTAA 6 cut(s) 561, 684, 1077, 1158, 1638, 2050
Sau3AI GATC 6 cut(s) 505, 1471, 1537, 1830, 1979, 2024
Sau96I GGNCC 3 cut(s) 95, 539, 1837
SchI GAGTC 4 cut(s) 1331, 1460, 1606, 1988
ScrFI CCNGG 3 cut(s) 1291, 1835, 1925
SduI GDGCHC 1 cut(s) 1860
SfaNI GCATC 7 cut(s) 120, 418, 579, 805, 1081, 2020, 2027
SfcI CTRYAG 1 cut(s) 15
SinI GGWCC 1 cut(s) 1837
SmiMI CAYNNNNRTG 2 cut(s) 1062, 1671
SmlI CTYRAG 1 cut(s) 611
SmoI CTYRAG 1 cut(s) 611
SseBI AGGCCT 1 cut(s) 790
SspMI CTAG 5 cut(s) 786, 1368, 1503, 1965, 1989
StuI AGGCCT 1 cut(s) 790
StyD4I CCNGG 3 cut(s) 1289, 1833, 1923
StyI CCWWGG 1 cut(s) 870
TaqI TCGA 5 cut(s) 79, 114, 578, 950, 1163
TatI WGTACW 1 cut(s) 1627
TauI GCSGC 1 cut(s) 424
TfiI GAWTC 3 cut(s) 446, 1619, 1973
Tru1I TTAA 6 cut(s) 561, 684, 1077, 1158, 1638, 2050
Tru9I TTAA 6 cut(s) 561, 684, 1077, 1158, 1638, 2050
TscAI CASTG 5 cut(s) 489, 735, 819, 1410, 1975
TseFI GTSAC 2 cut(s) 202, 1991
TseI GCWGC 9 cut(s) 403, 406, 409, 431, 434, 1094, 1282, 1825, 1959
Tsp45I GTSAC 2 cut(s) 202, 1991
TspDTI ATGAA 6 cut(s) 569, 1067, 1095, 1256, 1689, 1896
TspGWI ACGGA 2 cut(s) 74, 190
TspRI CASTG 5 cut(s) 489, 735, 819, 1410, 1975
VpaK11BI GGWCC 1 cut(s) 1837
VspI ATTAAT 1 cut(s) 561
XagI CCTNNNNNAGG 1 cut(s) 18
XapI RAATTY 4 cut(s) 343, 391, 1199, 1648
XceI RCATGY 1 cut(s) 1429
XmiI GTMKAC 1 cut(s) 1600
XmnI GAANNNNTTC 1 cut(s) 881
XspI CTAG 5 cut(s) 786, 1368, 1503, 1965, 1989
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.