transcription factor
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT1G06230 AT1G06230 AT1G06230 AT1G06230 |
| fragaria_vesca | FvH4_6g27070 FvH4_6g27070 FvH4_6g27070 FvH4_6g27070 FvH4_6g27070 |
| malus_domestica | MD09G1240500.v1.1 MD17G1233300.v1.1 |
| prunus_persica | Prupe.3G124500_v2.0.a1 Prupe.3G124500_v2.0.a1 Prupe.3G124500_v2.0.a1 Prupe.3G124500_v2.0.a1 Prupe.3G124500_v2.0.a1 Prupe.3G124500_v2.0.a1 Prupe.3G124500_v2.0.a1 Prupe.3G124500_v2.0.a1 Prupe.3G124500_v2.0.a1 Prupe.3G124500_v2.0.a1 |
| pyrus_communis | pycom09g15900 pycom17g23630 |
| rosa_chinensis | RchiOBHm_Chr2g0129031 |
| rosa_laevigata | RLG00000019045 |
| rosa_multiflora | Rmu_sc0009747.1_g000004 |
| rosa_rugosa | Rorug02G0283500 Rorug02G0283500 |
| rosa_samantha | Rh2AG336000 Rh2BG344000 Rh2CG322900 Rh2DG360600 |
| rosa_wichuraiana | Rw2G027240 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 2 cut(s) | 1245, 1332 |
| AasI | GACNNNNNNGTC | 1 cut(s) | 376 |
| Acc65I | GGTACC | 1 cut(s) | 1151 |
| AccB1I | GGYRCC | 3 cut(s) | 1151, 1396, 1855 |
| AccBSI | CCGCTC | 2 cut(s) | 398, 1514 |
| AccI | GTMKAC | 1 cut(s) | 1600 |
| AclWI | GGATC | 7 cut(s) | 500, 513, 1466, 1532, 1825, 1987, 2032 |
| AcoI | YGGCCR | 1 cut(s) | 474 |
| AcsI | RAATTY | 4 cut(s) | 343, 391, 1199, 1648 |
| AcuI | CTGAAG | 1 cut(s) | 1590 |
| AfaI | GTAC | 4 cut(s) | 56, 1153, 1184, 1629 |
| AfiI | CCNNNNNNNGG | 6 cut(s) | 20, 469, 666, 1846, 1913, 1914 |
| AgsI | TTSAA | 9 cut(s) | 91, 573, 958, 1021, 1043, 1682, 1902, 1913, 1956 |
| AjnI | CCWGG | 3 cut(s) | 1289, 1833, 1923 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 548, 580 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 1498, 1530 |
| Alw26I | GTCTC | 3 cut(s) | 730, 1210, 1703 |
| AlwI | GGATC | 7 cut(s) | 500, 513, 1466, 1532, 1825, 1987, 2032 |
| AlwNI | CAGNNNCTG | 2 cut(s) | 1808, 2021 |
| AoxI | GGCC | 6 cut(s) | 94, 141, 474, 539, 657, 788 |
| ApeKI | GCWGC | 9 cut(s) | 403, 406, 409, 431, 434, 1094, 1282, 1825, 1959 |
| ApoI | RAATTY | 4 cut(s) | 343, 391, 1199, 1648 |
| AseI | ATTAAT | 1 cut(s) | 561 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 881 |
| Asp718I | GGTACC | 1 cut(s) | 1151 |
| AspS9I | GGNCC | 3 cut(s) | 95, 539, 1837 |
| AsuHPI | GGTGA | 4 cut(s) | 41, 196, 655, 1940 |
| AvaII | GGWCC | 1 cut(s) | 1837 |
| AxyI | CCTNAGG | 1 cut(s) | 1527 |
| BaeGI | GKGCMC | 1 cut(s) | 1860 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 1135, 1168 |
| BamHI | GGATCC | 1 cut(s) | 505 |
| BanI | GGYRCC | 3 cut(s) | 1151, 1396, 1855 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 38, 70 |
| BauI | CACGAG | 1 cut(s) | 260 |
| BbsI | GAAGAC | 1 cut(s) | 1364 |
| BbvI | GCAGC | 9 cut(s) | 415, 418, 418, 421, 421, 1081, 1294, 1837, 1971 |
| BccI | CCATC | 1 cut(s) | 26 |
| BceAI | ACGGC | 2 cut(s) | 170, 461 |
| BciT130I | CCWGG | 3 cut(s) | 1291, 1835, 1925 |
| BcoDI | GTCTC | 3 cut(s) | 730, 1210, 1703 |
| BfaI | CTAG | 5 cut(s) | 786, 1368, 1503, 1965, 1989 |
| BfmI | CTRYAG | 1 cut(s) | 15 |
| BlpI | GCTNAGC | 2 cut(s) | 399, 1580 |
| Bme1390I | CCNGG | 3 cut(s) | 1291, 1835, 1925 |
| Bme18I | GGWCC | 1 cut(s) | 1837 |
| BmgT120I | GGNCC | 3 cut(s) | 95, 539, 1837 |
| BmrFI | CCNGG | 3 cut(s) | 1291, 1835, 1925 |
| BmsI | GCATC | 7 cut(s) | 120, 418, 579, 805, 1081, 2020, 2027 |
| BpiI | GAAGAC | 1 cut(s) | 1364 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 1442, 1474 |
| BpmI | CTGGAG | 2 cut(s) | 436, 1577 |
| Bpu10I | CCTNAGC | 1 cut(s) | 912 |
| Bpu1102I | GCTNAGC | 2 cut(s) | 399, 1580 |
| BpuEI | CTTGAG | 1 cut(s) | 632 |
| BsaBI | GATNNNNATC | 1 cut(s) | 1332 |
| BsaI | GGTCTC | 1 cut(s) | 1703 |
| BsaJI | CCNNGG | 4 cut(s) | 477, 870, 1924, 2042 |
| BsaXI | ACNNNNNCTCC | 4 cut(s) | 1483, 1498, 1513, 1528 |
| Bsc4I | CCNNNNNNNGG | 6 cut(s) | 20, 469, 666, 1846, 1913, 1914 |
| Bse118I | RCCGGY | 1 cut(s) | 462 |
| Bse1I | ACTGG | 1 cut(s) | 880 |
| Bse21I | CCTNAGG | 1 cut(s) | 1527 |
| Bse3DI | GCAATG | 1 cut(s) | 372 |
| Bse8I | GATNNNNATC | 1 cut(s) | 1332 |
| BseBI | CCWGG | 3 cut(s) | 1291, 1835, 1925 |
| BseDI | CCNNGG | 4 cut(s) | 477, 870, 1924, 2042 |
| BseGI | GGATG | 2 cut(s) | 1216, 1267 |
| BseJI | GATNNNNATC | 1 cut(s) | 1332 |
| BseLI | CCNNNNNNNGG | 6 cut(s) | 20, 469, 666, 1846, 1913, 1914 |
| BseMI | GCAATG | 1 cut(s) | 372 |
| BseNI | ACTGG | 1 cut(s) | 880 |
| BseRI | GAGGAG | 5 cut(s) | 348, 398, 993, 1407, 1657 |
| BseSI | GKGCMC | 1 cut(s) | 1860 |
| BseXI | GCAGC | 9 cut(s) | 415, 418, 418, 421, 421, 1081, 1294, 1837, 1971 |
| BseYI | CCCAGC | 1 cut(s) | 351 |
| BsgI | GTGCAG | 1 cut(s) | 747 |
| BshFI | GGCC | 6 cut(s) | 96, 143, 476, 541, 659, 790 |
| BshNI | GGYRCC | 3 cut(s) | 1151, 1396, 1855 |
| BsiSI | CCGG | 2 cut(s) | 463, 542 |
| BslFI | GGGAC | 2 cut(s) | 334, 1565 |
| BslI | CCNNNNNNNGG | 6 cut(s) | 20, 469, 666, 1846, 1913, 1914 |
| BsmAI | GTCTC | 3 cut(s) | 730, 1210, 1703 |
| BsmBI | CGTCTC | 1 cut(s) | 730 |
| BsmFI | GGGAC | 2 cut(s) | 334, 1565 |
| BsnI | GGCC | 6 cut(s) | 96, 143, 476, 541, 659, 790 |
| Bso31I | GGTCTC | 1 cut(s) | 1703 |
| Bsp1286I | GDGCHC | 1 cut(s) | 1860 |
| Bsp1407I | TGTACA | 1 cut(s) | 1627 |
| Bsp143I | GATC | 6 cut(s) | 505, 1471, 1537, 1830, 1979, 2024 |
| Bsp1720I | GCTNAGC | 2 cut(s) | 399, 1580 |
| BspANI | GGCC | 6 cut(s) | 96, 143, 476, 541, 659, 790 |
| BspPI | GGATC | 7 cut(s) | 500, 513, 1466, 1532, 1825, 1987, 2032 |
| BspQI | GCTCTTC | 1 cut(s) | 101 |
| BspT107I | GGYRCC | 3 cut(s) | 1151, 1396, 1855 |
| BspTNI | GGTCTC | 1 cut(s) | 1703 |
| BsrBI | CCGCTC | 2 cut(s) | 398, 1514 |
| BsrDI | GCAATG | 1 cut(s) | 372 |
| BsrFI | RCCGGY | 1 cut(s) | 462 |
| BsrGI | TGTACA | 1 cut(s) | 1627 |
| BsrI | ACTGG | 1 cut(s) | 880 |
| BssAI | RCCGGY | 1 cut(s) | 462 |
| BssECI | CCNNGG | 4 cut(s) | 477, 870, 1924, 2042 |
| BssMI | GATC | 6 cut(s) | 505, 1471, 1537, 1830, 1979, 2024 |
| BssSI | CACGAG | 1 cut(s) | 260 |
| BssT1I | CCWWGG | 1 cut(s) | 870 |
| Bst2BI | CACGAG | 1 cut(s) | 260 |
| Bst2UI | CCWGG | 3 cut(s) | 1291, 1835, 1925 |
| Bst6I | CTCTTC | 4 cut(s) | 101, 641, 854, 1745 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 589 |
| BstAUI | TGTACA | 1 cut(s) | 1627 |
| BstC8I | GCNNGC | 3 cut(s) | 528, 930, 1794 |
| BstDSI | CCRYGG | 1 cut(s) | 477 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 18 |
| BstF5I | GGATG | 2 cut(s) | 1216, 1267 |
| BstKTI | GATC | 6 cut(s) | 508, 1474, 1540, 1833, 1982, 2027 |
| BstMAI | GTCTC | 3 cut(s) | 730, 1210, 1703 |
| BstMBI | GATC | 6 cut(s) | 505, 1471, 1537, 1830, 1979, 2024 |
| BstNI | CCWGG | 3 cut(s) | 1291, 1835, 1925 |
| BstNSI | RCATGY | 1 cut(s) | 1429 |
| BstSCI | CCNGG | 3 cut(s) | 1289, 1833, 1923 |
| BstSFI | CTRYAG | 1 cut(s) | 15 |
| BstSLI | GKGCMC | 1 cut(s) | 1860 |
| BstV1I | GCAGC | 9 cut(s) | 415, 418, 418, 421, 421, 1081, 1294, 1837, 1971 |
| BstV2I | GAAGAC | 1 cut(s) | 1364 |
| BstX2I | RGATCY | 4 cut(s) | 505, 1537, 1830, 1979 |
| BstYI | RGATCY | 4 cut(s) | 505, 1537, 1830, 1979 |
| Bsu36I | CCTNAGG | 1 cut(s) | 1527 |
| BsuRI | GGCC | 6 cut(s) | 96, 143, 476, 541, 659, 790 |
| BtgI | CCRYGG | 1 cut(s) | 477 |
| BtsCI | GGATG | 2 cut(s) | 1216, 1267 |
| BtsI | GCAGTG | 4 cut(s) | 489, 735, 1403, 1975 |
| BtsIMutI | CAGTG | 5 cut(s) | 489, 735, 819, 1403, 1975 |
| Cac8I | GCNNGC | 3 cut(s) | 528, 930, 1794 |
| CaiI | CAGNNNCTG | 2 cut(s) | 1808, 2021 |
| Cfr10I | RCCGGY | 1 cut(s) | 462 |
| Cfr13I | GGNCC | 3 cut(s) | 95, 539, 1837 |
| CseI | GACGC | 1 cut(s) | 366 |
| Csp6I | GTAC | 4 cut(s) | 55, 1152, 1183, 1628 |
| CviQI | GTAC | 4 cut(s) | 55, 1152, 1183, 1628 |
| DpnI | GATC | 6 cut(s) | 507, 1473, 1539, 1832, 1981, 2026 |
| DpnII | GATC | 6 cut(s) | 505, 1471, 1537, 1830, 1979, 2024 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 376 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 376 |
| EaeI | YGGCCR | 1 cut(s) | 474 |
| Eam1104I | CTCTTC | 4 cut(s) | 101, 641, 854, 1745 |
| EarI | CTCTTC | 4 cut(s) | 101, 641, 854, 1745 |
| EciI | GGCGGA | 3 cut(s) | 351, 408, 915 |
| Eco130I | CCWWGG | 1 cut(s) | 870 |
| Eco147I | AGGCCT | 1 cut(s) | 790 |
| Eco31I | GGTCTC | 1 cut(s) | 1703 |
| Eco47I | GGWCC | 1 cut(s) | 1837 |
| Eco57I | CTGAAG | 1 cut(s) | 1590 |
| Eco81I | CCTNAGG | 1 cut(s) | 1527 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 18 |
| EcoO109I | RGGNCCY | 2 cut(s) | 95, 1837 |
| EcoRI | GAATTC | 3 cut(s) | 343, 391, 1648 |
| EcoRII | CCWGG | 3 cut(s) | 1289, 1833, 1923 |
| EcoT14I | CCWWGG | 1 cut(s) | 870 |
| ErhI | CCWWGG | 1 cut(s) | 870 |
| Esp3I | CGTCTC | 1 cut(s) | 730 |
| FaqI | GGGAC | 2 cut(s) | 334, 1565 |
| FauI | CCCGC | 2 cut(s) | 1519, 2026 |
| FblI | GTMKAC | 1 cut(s) | 1600 |
| FokI | GGATG | 2 cut(s) | 1223, 1274 |
| FspBI | CTAG | 5 cut(s) | 786, 1368, 1503, 1965, 1989 |
| GsaI | CCCAGC | 1 cut(s) | 355 |
| GsuI | CTGGAG | 2 cut(s) | 436, 1577 |
| HaeIII | GGCC | 6 cut(s) | 96, 143, 476, 541, 659, 790 |
| HapII | CCGG | 2 cut(s) | 463, 542 |
| HgaI | GACGC | 1 cut(s) | 366 |
| HindIII | AAGCTT | 3 cut(s) | 608, 1100, 1577 |
| HinfI | GANTC | 7 cut(s) | 446, 1322, 1451, 1597, 1619, 1973, 1994 |
| HpaII | CCGG | 2 cut(s) | 463, 542 |
| HphI | GGTGA | 4 cut(s) | 41, 196, 655, 1940 |
| Hpy166II | GTNNAC | 4 cut(s) | 57, 745, 1601, 1687 |
| Hpy188III | TCNNGA | 8 cut(s) | 503, 1021, 1337, 1389, 1421, 1594, 1977, 2022 |
| Hpy8I | GTNNAC | 4 cut(s) | 57, 745, 1601, 1687 |
| Hpy99I | CGWCG | 1 cut(s) | 227 |
| HpyAV | CCTTC | 5 cut(s) | 20, 425, 526, 1425, 1614 |
| HpyCH4V | TGCA | 6 cut(s) | 728, 796, 1029, 1111, 1205, 1792 |
| KpnI | GGTACC | 1 cut(s) | 1155 |
| Kzo9I | GATC | 6 cut(s) | 505, 1471, 1537, 1830, 1979, 2024 |
| LguI | GCTCTTC | 1 cut(s) | 101 |
| LmnI | GCTCC | 5 cut(s) | 10, 35, 417, 1519, 1720 |
| Lsp1109I | GCAGC | 9 cut(s) | 415, 418, 418, 421, 421, 1081, 1294, 1837, 1971 |
| LweI | GCATC | 7 cut(s) | 120, 418, 579, 805, 1081, 2020, 2027 |
| MaeI | CTAG | 5 cut(s) | 786, 1368, 1503, 1965, 1989 |
| MaeIII | GTNAC | 6 cut(s) | 187, 202, 697, 781, 1735, 1991 |
| MalI | GATC | 6 cut(s) | 507, 1473, 1539, 1832, 1981, 2026 |
| MbiI | CCGCTC | 2 cut(s) | 398, 1514 |
| MboI | GATC | 6 cut(s) | 505, 1471, 1537, 1830, 1979, 2024 |
| MflI | RGATCY | 4 cut(s) | 505, 1537, 1830, 1979 |
| MhlI | GDGCHC | 1 cut(s) | 1860 |
| MlyI | GAGTC | 4 cut(s) | 1331, 1460, 1606, 1988 |
| MmeI | TCCRAC | 1 cut(s) | 798 |
| MroXI | GAANNNNTTC | 1 cut(s) | 881 |
| MseI | TTAA | 6 cut(s) | 561, 684, 1077, 1158, 1638, 2050 |
| MslI | CAYNNNNRTG | 2 cut(s) | 1062, 1671 |
| MspA1I | CMGCKG | 1 cut(s) | 802 |
| MspI | CCGG | 2 cut(s) | 463, 542 |
| MspR9I | CCNGG | 3 cut(s) | 1291, 1835, 1925 |
| MvaI | CCWGG | 3 cut(s) | 1291, 1835, 1925 |
| NdeII | GATC | 6 cut(s) | 505, 1471, 1537, 1830, 1979, 2024 |
| NmuCI | GTSAC | 2 cut(s) | 202, 1991 |
| NspI | RCATGY | 1 cut(s) | 1429 |
| PceI | AGGCCT | 1 cut(s) | 790 |
| PciSI | GCTCTTC | 1 cut(s) | 101 |
| PdmI | GAANNNNTTC | 1 cut(s) | 881 |
| PfeI | GAWTC | 3 cut(s) | 446, 1619, 1973 |
| PfoI | TCCNGGA | 2 cut(s) | 1289, 1833 |
| PleI | GAGTC | 4 cut(s) | 1330, 1459, 1605, 1988 |
| PpsI | GAGTC | 4 cut(s) | 1330, 1459, 1605, 1988 |
| PpuMI | RGGWCCY | 1 cut(s) | 1837 |
| PshBI | ATTAAT | 1 cut(s) | 561 |
| PsiI | TTATAA | 2 cut(s) | 1245, 1332 |
| Psp5II | RGGWCCY | 1 cut(s) | 1837 |
| Psp6I | CCWGG | 3 cut(s) | 1289, 1833, 1923 |
| PspFI | CCCAGC | 1 cut(s) | 351 |
| PspGI | CCWGG | 3 cut(s) | 1289, 1833, 1923 |
| PspPI | GGNCC | 3 cut(s) | 95, 539, 1837 |
| PspPPI | RGGWCCY | 1 cut(s) | 1837 |
| PstNI | CAGNNNCTG | 2 cut(s) | 1808, 2021 |
| PsuI | RGATCY | 4 cut(s) | 505, 1537, 1830, 1979 |
| PvuII | CAGCTG | 1 cut(s) | 802 |
| RsaI | GTAC | 4 cut(s) | 56, 1153, 1184, 1629 |
| RsaNI | GTAC | 4 cut(s) | 55, 1152, 1183, 1628 |
| RseI | CAYNNNNRTG | 2 cut(s) | 1062, 1671 |
| SapI | GCTCTTC | 1 cut(s) | 101 |
| SaqAI | TTAA | 6 cut(s) | 561, 684, 1077, 1158, 1638, 2050 |
| Sau3AI | GATC | 6 cut(s) | 505, 1471, 1537, 1830, 1979, 2024 |
| Sau96I | GGNCC | 3 cut(s) | 95, 539, 1837 |
| SchI | GAGTC | 4 cut(s) | 1331, 1460, 1606, 1988 |
| ScrFI | CCNGG | 3 cut(s) | 1291, 1835, 1925 |
| SduI | GDGCHC | 1 cut(s) | 1860 |
| SfaNI | GCATC | 7 cut(s) | 120, 418, 579, 805, 1081, 2020, 2027 |
| SfcI | CTRYAG | 1 cut(s) | 15 |
| SinI | GGWCC | 1 cut(s) | 1837 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 1062, 1671 |
| SmlI | CTYRAG | 1 cut(s) | 611 |
| SmoI | CTYRAG | 1 cut(s) | 611 |
| SseBI | AGGCCT | 1 cut(s) | 790 |
| SspMI | CTAG | 5 cut(s) | 786, 1368, 1503, 1965, 1989 |
| StuI | AGGCCT | 1 cut(s) | 790 |
| StyD4I | CCNGG | 3 cut(s) | 1289, 1833, 1923 |
| StyI | CCWWGG | 1 cut(s) | 870 |
| TaqI | TCGA | 5 cut(s) | 79, 114, 578, 950, 1163 |
| TatI | WGTACW | 1 cut(s) | 1627 |
| TauI | GCSGC | 1 cut(s) | 424 |
| TfiI | GAWTC | 3 cut(s) | 446, 1619, 1973 |
| Tru1I | TTAA | 6 cut(s) | 561, 684, 1077, 1158, 1638, 2050 |
| Tru9I | TTAA | 6 cut(s) | 561, 684, 1077, 1158, 1638, 2050 |
| TscAI | CASTG | 5 cut(s) | 489, 735, 819, 1410, 1975 |
| TseFI | GTSAC | 2 cut(s) | 202, 1991 |
| TseI | GCWGC | 9 cut(s) | 403, 406, 409, 431, 434, 1094, 1282, 1825, 1959 |
| Tsp45I | GTSAC | 2 cut(s) | 202, 1991 |
| TspDTI | ATGAA | 6 cut(s) | 569, 1067, 1095, 1256, 1689, 1896 |
| TspGWI | ACGGA | 2 cut(s) | 74, 190 |
| TspRI | CASTG | 5 cut(s) | 489, 735, 819, 1410, 1975 |
| VpaK11BI | GGWCC | 1 cut(s) | 1837 |
| VspI | ATTAAT | 1 cut(s) | 561 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 18 |
| XapI | RAATTY | 4 cut(s) | 343, 391, 1199, 1648 |
| XceI | RCATGY | 1 cut(s) | 1429 |
| XmiI | GTMKAC | 1 cut(s) | 1600 |
| XmnI | GAANNNNTTC | 1 cut(s) | 881 |
| XspI | CTAG | 5 cut(s) | 786, 1368, 1503, 1965, 1989 |