MD09G1271900.v1.1

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr09
OG0018102
Physical Location & Seq
Forward (+)
34800927 .. 34804038
3112 bp
Loading structure...
UTR
Exon/CDS
Intron
MD09G1271900.v1.1.491

Sequence Viewer

Length: 591 bp
ATGATGAAAAGCAACTGCAGGAAAGCAGCAATGGAGACCCGGCAGCAGCATATTCAAGTCTATCTGGGTAATCTGCCAGTGCCTAAACCTCCAACAAAATGGGAAACTTTTGCCATAACAAAAGGGATTTCCCCTGAGAGATGGTTGTGTGAGACATTGAGAACCTATAAATTTGTGAGCTGTTCCATTTCTGAAGGTATCACTCCGGAGAGAGAATTGCTGCTAAGGTCCAAGTTGCAACTCAGGTGTAAGTTACCAATCTGTGCCAGTATTTCCCCACTCAAGTGGTTCTGGTTCAAGTTTAGAAGCTGCTGTTTTGTCATTTGTCCGAGCTCAGGTGGGATTAGGCCTGAAATTTTATTTCAACCCATACGCATATATGTGATGCTTATGCATTTTCCCCACTGTGGTGAGAGTGTACCAACAAACTGGTTCTCATTAAGAGTAATGAATTCAAGACTGGGATGCACACCAAATGCATTTATAATGTTCCCGGTAAATTGGTTCCCATCAAACAGGACTCTAGACAATGCCAAACAATTCCTCAAGCACTCGGCAAATACCCTGTTAGATTGTTATTGTTCACTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

197

Amino Acids

22.73

Weight (kDa)

9.5

Isoelectric Point (pI)

56.27

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0018102)

Species Orthologous Gene IDs
malus_domestica MD07G1185400.v1.1 MD09G1271900.v1.1
pyrus_communis pycom02g11260 pycom05g07370
rosa_chinensis RchiOBHm_Chr1g0344651 RchiOBHm_Chr5g0046261 RchiOBHm_Chr5g0046511 RchiOBHm_Chr5g0048851
rosa_multiflora Rmu_co8339355.1_g000001
rosa_rugosa Rorug01G0268500
rosa_samantha Rh3DG328200

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 485
AccIII TCCGGA 1 cut(s) 205
AcsI RAATTY 3 cut(s) 170, 354, 451
AcuI CTGAAG 1 cut(s) 213
AfaI GTAC 1 cut(s) 420
AfiI CCNNNNNNNGG 2 cut(s) 335, 407
AgsI TTSAA 4 cut(s) 56, 298, 365, 456
AleI CACNNNNGTG 2 cut(s) 283, 408
AluBI AGCT 3 cut(s) 180, 309, 333
AluI AGCT 3 cut(s) 180, 309, 333
Alw21I GWGCWC 1 cut(s) 335
Alw26I GTCTC 2 cut(s) 29, 146
Aor13HI TCCGGA 1 cut(s) 205
AoxI GGCC 1 cut(s) 347
ApeKI GCWGC 5 cut(s) 26, 43, 46, 220, 309
ApoI RAATTY 3 cut(s) 170, 354, 451
AspS9I GGNCC 1 cut(s) 228
AsuC2I CCSGG 2 cut(s) 40, 494
AsuHPI GGTGA 1 cut(s) 422
AvaII GGWCC 1 cut(s) 228
BanII GRGCYC 1 cut(s) 335
Bbv12I GWGCWC 1 cut(s) 335
BbvI GCAGC 5 cut(s) 38, 55, 58, 207, 296
BccI CCATC 2 cut(s) 135, 517
BcnI CCSGG 2 cut(s) 40, 494
BcoDI GTCTC 2 cut(s) 29, 146
BfaI CTAG 1 cut(s) 524
BfmI CTRYAG 1 cut(s) 16
BisI GCNGC 5 cut(s) 27, 44, 47, 221, 310
BlsI GCNGC 5 cut(s) 28, 45, 48, 222, 311
Bme1390I CCNGG 2 cut(s) 40, 494
Bme18I GGWCC 1 cut(s) 228
BmgT120I GGNCC 1 cut(s) 228
BmiI GGNNCC 1 cut(s) 506
BmrFI CCNGG 2 cut(s) 40, 494
BmrI ACTGGG 1 cut(s) 470
BmsI GCATC 2 cut(s) 375, 455
BmuI ACTGGG 1 cut(s) 470
Bpu10I CCTNAGC 2 cut(s) 224, 334
BpuEI CTTGAG 2 cut(s) 266, 530
BpuMI CCSGG 2 cut(s) 40, 494
BsaI GGTCTC 1 cut(s) 29
BsaWI WCCGGW 1 cut(s) 205
Bsc4I CCNNNNNNNGG 2 cut(s) 335, 407
Bse1I ACTGG 4 cut(s) 77, 267, 434, 465
Bse3DI GCAATG 1 cut(s) 36
BseAI TCCGGA 1 cut(s) 205
BseGI GGATG 1 cut(s) 470
BseLI CCNNNNNNNGG 2 cut(s) 335, 407
BseMI GCAATG 1 cut(s) 36
BseMII CTCAG 3 cut(s) 126, 256, 348
BseNI ACTGG 4 cut(s) 77, 267, 434, 465
BseXI GCAGC 5 cut(s) 38, 55, 58, 207, 296
BshFI GGCC 1 cut(s) 349
BsiHKAI GWGCWC 1 cut(s) 335
BsiSI CCGG 3 cut(s) 40, 206, 494
BslI CCNNNNNNNGG 2 cut(s) 335, 407
BsmAI GTCTC 2 cut(s) 29, 146
BsnI GGCC 1 cut(s) 349
Bso31I GGTCTC 1 cut(s) 29
Bsp1286I GDGCHC 1 cut(s) 335
Bsp13I TCCGGA 1 cut(s) 205
BspANI GGCC 1 cut(s) 349
BspCNI CTCAG 3 cut(s) 127, 255, 347
BspEI TCCGGA 1 cut(s) 205
BspLI GGNNCC 1 cut(s) 506
BspMAI CTGCAG 1 cut(s) 20
BspTNI GGTCTC 1 cut(s) 29
BsrDI GCAATG 1 cut(s) 36
BsrI ACTGG 4 cut(s) 77, 267, 434, 465
Bst4CI ACNGT 1 cut(s) 407
BstDEI CTNAG 4 cut(s) 135, 224, 242, 334
BstF5I GGATG 1 cut(s) 470
BstMAI GTCTC 2 cut(s) 29, 146
BstSCI CCNGG 2 cut(s) 38, 492
BstSFI CTRYAG 1 cut(s) 16
BstV1I GCAGC 5 cut(s) 38, 55, 58, 207, 296
BstXI CCANNNNNNTGG 3 cut(s) 99, 285, 429
BsuRI GGCC 1 cut(s) 349
BtsCI GGATG 1 cut(s) 470
BtsIMutI CAGTG 2 cut(s) 84, 403
Cfr13I GGNCC 1 cut(s) 228
Csp6I GTAC 1 cut(s) 419
CviJI RGCY 4 cut(s) 180, 309, 333, 349
CviKI_1 RGCY 4 cut(s) 180, 309, 333, 349
CviQI GTAC 1 cut(s) 419
DdeI CTNAG 4 cut(s) 135, 224, 242, 334
Ecl136II GAGCTC 1 cut(s) 333
Eco147I AGGCCT 1 cut(s) 349
Eco24I GRGCYC 1 cut(s) 335
Eco31I GGTCTC 1 cut(s) 29
Eco47I GGWCC 1 cut(s) 228
Eco53kI GAGCTC 1 cut(s) 333
Eco57I CTGAAG 1 cut(s) 213
EcoICRI GAGCTC 1 cut(s) 333
EcoRI GAATTC 1 cut(s) 451
EcoT22I ATGCAT 2 cut(s) 396, 481
EcoT38I GRGCYC 1 cut(s) 335
FaiI YATR 9 cut(s) 51, 116, 168, 371, 377, 379, 381, 392, 485
Fnu4HI GCNGC 5 cut(s) 27, 44, 47, 221, 310
FokI GGATG 1 cut(s) 477
FriOI GRGCYC 1 cut(s) 335
Fsp4HI GCNGC 5 cut(s) 27, 44, 47, 221, 310
FspBI CTAG 1 cut(s) 524
GluI GCNGC 5 cut(s) 27, 44, 47, 221, 310
HaeIII GGCC 1 cut(s) 349
HapII CCGG 3 cut(s) 40, 206, 494
HinfI GANTC 1 cut(s) 520
HpaII CCGG 3 cut(s) 40, 206, 494
HphI GGTGA 1 cut(s) 422
Hpy166II GTNNAC 2 cut(s) 419, 584
Hpy188I TCNGA 2 cut(s) 193, 330
Hpy188III TCNNGA 3 cut(s) 206, 456, 524
Hpy8I GTNNAC 2 cut(s) 419, 584
HpyAV CCTTC 1 cut(s) 188
HpyCH4III ACNGT 1 cut(s) 407
HpyCH4V TGCA 5 cut(s) 18, 238, 394, 468, 479
HpyF3I CTNAG 4 cut(s) 135, 224, 242, 334
Kpn2I TCCGGA 1 cut(s) 205
Lsp1109I GCAGC 5 cut(s) 38, 55, 58, 207, 296
LweI GCATC 2 cut(s) 375, 455
MaeI CTAG 1 cut(s) 524
MaeIII GTNAC 1 cut(s) 252
MhlI GDGCHC 1 cut(s) 335
MluCI AATT 6 cut(s) 170, 215, 354, 451, 499, 539
MlyI GAGTC 1 cut(s) 514
MmeI TCCRAC 1 cut(s) 116
MnlI CCTC 2 cut(s) 99, 554
Mph1103I ATGCAT 2 cut(s) 396, 481
MroI TCCGGA 1 cut(s) 205
MseI TTAA 1 cut(s) 440
MslI CAYNNNNRTG 3 cut(s) 283, 380, 408
MspI CCGG 3 cut(s) 40, 206, 494
MspR9I CCNGG 2 cut(s) 40, 494
NciI CCSGG 2 cut(s) 40, 494
NlaIV GGNNCC 1 cut(s) 506
NmeAIII GCCGAG 1 cut(s) 533
NsiI ATGCAT 2 cut(s) 396, 481
OliI CACNNNNGTG 2 cut(s) 283, 408
PceI AGGCCT 1 cut(s) 349
PkrI GCNGC 5 cut(s) 28, 45, 48, 222, 311
PleI GAGTC 1 cut(s) 514
PpsI GAGTC 1 cut(s) 514
PsiI TTATAA 1 cut(s) 485
Psp124BI GAGCTC 1 cut(s) 335
PspN4I GGNNCC 1 cut(s) 506
PspPI GGNCC 1 cut(s) 228
PstI CTGCAG 1 cut(s) 20
RsaI GTAC 1 cut(s) 420
RsaNI GTAC 1 cut(s) 419
RseI CAYNNNNRTG 3 cut(s) 283, 380, 408
SacI GAGCTC 1 cut(s) 335
SaqAI TTAA 1 cut(s) 440
SatI GCNGC 5 cut(s) 27, 44, 47, 221, 310
Sau96I GGNCC 1 cut(s) 228
SchI GAGTC 1 cut(s) 514
ScrFI CCNGG 2 cut(s) 40, 494
SduI GDGCHC 1 cut(s) 335
SetI ASST 9 cut(s) 91, 167, 182, 199, 230, 248, 311, 335, 340
SfaNI GCATC 2 cut(s) 375, 455
SfcI CTRYAG 1 cut(s) 16
SinI GGWCC 1 cut(s) 228
SmiMI CAYNNNNRTG 3 cut(s) 283, 380, 408
SmlI CTYRAG 2 cut(s) 281, 545
SmoI CTYRAG 2 cut(s) 281, 545
Sse9I AATT 6 cut(s) 170, 215, 354, 451, 499, 539
SseBI AGGCCT 1 cut(s) 349
SspMI CTAG 1 cut(s) 524
SstI GAGCTC 1 cut(s) 335
StuI AGGCCT 1 cut(s) 349
StyD4I CCNGG 2 cut(s) 38, 492
TaaI ACNGT 1 cut(s) 407
TasI AATT 6 cut(s) 170, 215, 354, 451, 499, 539
Tru1I TTAA 1 cut(s) 440
Tru9I TTAA 1 cut(s) 440
TscAI CASTG 2 cut(s) 84, 410
TseI GCWGC 5 cut(s) 26, 43, 46, 220, 309
TspDTI ATGAA 2 cut(s) 20, 464
TspRI CASTG 2 cut(s) 84, 410
VpaK11BI GGWCC 1 cut(s) 228
XapI RAATTY 3 cut(s) 170, 354, 451
XbaI TCTAGA 1 cut(s) 523
XspI CTAG 1 cut(s) 524
Zsp2I ATGCAT 2 cut(s) 396, 481
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.