Rorug01G0268500

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000001
OG0018102
Physical Location & Seq
Reverse (-)
38087346 .. 38088655
1310 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug01G0268500.1

Sequence Viewer

Length: 1011 bp
ATGACTGAAAATCAGCCGCCTGACCATGAAGAAAAAAACCTCAGTAGTGAGTGTAAGGAACTCCTTTCTGTCCCCAAAGAAAGAGGCTGGATAACCCTTCTGCGCCAATATCAATTCCAAGGCTTTTGGTGCCCATCAGCAGAAGTATTCCAAGCCGTAATCTCTTTCCAAAAGCACTTCCATGCTAAAGACTCCGACATAGTTGTGGCCAGCCTACCCAAATCCGGCACAACATGGTTGAAAGCCTTGACTTTTGCTATTTTGAATCGACACCGTTTCGAAATACAGACCCATCCCTTGCTCACTTCCAACTCTCATAATCTTGTGCCATTTTTTGAGTTGGATCTCTATACAAGCAACCTAGTTCCTGATTTCGCATCCAAGTTTCCTGAGCCAAGACTCTTTGCGACCCATATTCCCTTTCCTTCTTTGGGTACAATTAAAGAGTCCAATTCTAAGATCATTTATGTTTGCAGAAATCCATTCGACTCATTTGTTTCTGCTTGGCATTTCGTTAACGAAGTCCGTCCGCAATCTTCATCTCCATTGTCGCTTGATGAGGCCTTTGATATGTATTGCCAAGGCATGAGTGCGTTTGGTCCATTTTGGGATCACATTTTGGGGTACTGGAAAGAGAACTTGAAGAGACCTAACAATGTGTTATTCTTGAAGTACGAGGACATGAAGGAAGATGGTGTAGTTCACTTGAAAGCATTGGCTAAGTTTTTAGACTGCCCTTTCACTGAGGAGGAGGAGAGAAACGGTGTGATTGAAGCCATAGCAAAGCTCTGTTCTTTTGAGGCCATGAAAAAGTTGGAGATCAACAAAACTGGAACGTTTGTCATGAACTGGGAGAATAAGACCCTGTTCAGAAAAGCTGAGGTGGGAGATTGGGTTAACTATTTGACCCCTAAGATGGAGGAGAGAATGTCTAAAGTCATAGAAGAAAAGTTGGGTGGTTCAGGCCTGACATTCAAAGTGATTCCCGAGCTAGCAGATCCTGTCCAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

336

Amino Acids

38.7

Weight (kDa)

5.85

Isoelectric Point (pI)

50.08

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Sulfotransfer_1 PF00685 64 - 322 8.5e-69 Sulfotransferase domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0018102)

Species Orthologous Gene IDs
malus_domestica MD07G1185400.v1.1 MD09G1271900.v1.1
pyrus_communis pycom02g11260 pycom05g07370
rosa_chinensis RchiOBHm_Chr1g0344651 RchiOBHm_Chr5g0046261 RchiOBHm_Chr5g0046511 RchiOBHm_Chr5g0048851
rosa_multiflora Rmu_co8339355.1_g000001
rosa_rugosa Rorug01G0268500
rosa_samantha Rh3DG328200

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 129
AciI CCGC 2 cut(s) 17, 530
AclI AACGTT 1 cut(s) 836
AclWI GGATC 3 cut(s) 351, 618, 992
AcoI YGGCCR 1 cut(s) 207
AfaI GTAC 3 cut(s) 436, 626, 674
AfiI CCNNNNNNNGG 3 cut(s) 224, 431, 916
AgsI TTSAA 7 cut(s) 241, 265, 643, 670, 709, 773, 976
AluBI AGCT 3 cut(s) 787, 878, 991
AluI AGCT 3 cut(s) 787, 878, 991
Alw26I GTCTC 1 cut(s) 640
AlwI GGATC 3 cut(s) 351, 618, 992
AlwNI CAGNNNCTG 1 cut(s) 1001
Ama87I CYCGRG 1 cut(s) 986
AoxI GGCC 4 cut(s) 207, 561, 801, 964
AspLEI GCGC 1 cut(s) 105
AspS9I GGNCC 1 cut(s) 599
AsuII TTCGAA 1 cut(s) 279
AsuNHI GCTAGC 1 cut(s) 991
AvaI CYCGRG 1 cut(s) 986
AvaII GGWCC 1 cut(s) 599
BaeGI GKGCMC 1 cut(s) 134
BalI TGGCCA 1 cut(s) 209
BanI GGYRCC 1 cut(s) 129
BbvCI CCTCAGC 1 cut(s) 879
BccI CCATC 4 cut(s) 142, 300, 686, 910
BceAI ACGGC 1 cut(s) 140
BcoDI GTCTC 1 cut(s) 640
BfaI CTAG 2 cut(s) 362, 992
BisI GCNGC 1 cut(s) 17
BlsI GCNGC 1 cut(s) 18
Bme18I GGWCC 1 cut(s) 599
BmeT110I CYCGRG 1 cut(s) 986
BmgT120I GGNCC 1 cut(s) 599
BmiI GGNNCC 1 cut(s) 131
BmrI ACTGGG 1 cut(s) 859
BmsI GCATC 1 cut(s) 386
BmtI GCTAGC 1 cut(s) 995
BmuI ACTGGG 1 cut(s) 859
Bpu10I CCTNAGC 2 cut(s) 390, 879
Bpu14I TTCGAA 1 cut(s) 279
BsaI GGTCTC 1 cut(s) 640
BsaJI CCNNGG 2 cut(s) 118, 580
BsaXI ACNNNNNCTCC 4 cut(s) 879, 909, 914, 944
Bsc4I CCNNNNNNNGG 3 cut(s) 224, 431, 916
Bse1I ACTGG 4 cut(s) 632, 835, 854, 1006
BseDI CCNNGG 2 cut(s) 118, 580
BseGI GGATG 2 cut(s) 292, 377
BseLI CCNNNNNNNGG 3 cut(s) 224, 431, 916
BseMII CTCAG 4 cut(s) 55, 381, 735, 870
BseNI ACTGG 4 cut(s) 632, 835, 854, 1006
BseRI GAGGAG 4 cut(s) 761, 764, 767, 935
BseSI GKGCMC 1 cut(s) 134
BshFI GGCC 4 cut(s) 209, 563, 803, 966
BshNI GGYRCC 1 cut(s) 129
BsiHKCI CYCGRG 1 cut(s) 986
BsiSI CCGG 1 cut(s) 225
BslFI GGGAC 1 cut(s) 56
BslI CCNNNNNNNGG 3 cut(s) 224, 431, 916
BsmAI GTCTC 1 cut(s) 640
BsmFI GGGAC 1 cut(s) 56
BsnI GGCC 4 cut(s) 209, 563, 803, 966
Bso31I GGTCTC 1 cut(s) 640
BsoBI CYCGRG 1 cut(s) 986
Bsp119I TTCGAA 1 cut(s) 279
Bsp1286I GDGCHC 1 cut(s) 134
Bsp143I GATC 5 cut(s) 343, 459, 610, 819, 997
BspACI CCGC 2 cut(s) 17, 530
BspANI GGCC 4 cut(s) 209, 563, 803, 966
BspCNI CTCAG 4 cut(s) 54, 382, 736, 871
BspHI TCATGA 1 cut(s) 843
BspLI GGNNCC 1 cut(s) 131
BspOI GCTAGC 1 cut(s) 995
BspPI GGATC 3 cut(s) 351, 618, 992
BspT104I TTCGAA 1 cut(s) 279
BspT107I GGYRCC 1 cut(s) 129
BspTNI GGTCTC 1 cut(s) 640
BsrI ACTGG 4 cut(s) 632, 835, 854, 1006
BssECI CCNNGG 2 cut(s) 118, 580
BssMI GATC 5 cut(s) 343, 459, 610, 819, 997
BssT1I CCWWGG 2 cut(s) 118, 580
Bst4CI ACNGT 2 cut(s) 275, 764
Bst6I CTCTTC 1 cut(s) 638
BstBI TTCGAA 1 cut(s) 279
BstC8I GCNNGC 2 cut(s) 211, 993
BstDEI CTNAG 7 cut(s) 41, 390, 456, 720, 744, 879, 912
BstF5I GGATG 2 cut(s) 292, 377
BstHHI GCGC 1 cut(s) 105
BstKTI GATC 5 cut(s) 346, 462, 613, 822, 1000
BstMAI GTCTC 1 cut(s) 640
BstMBI GATC 5 cut(s) 343, 459, 610, 819, 997
BstMWI GCNNNNNNNGC 1 cut(s) 129
BstSLI GKGCMC 1 cut(s) 134
BstX2I RGATCY 2 cut(s) 343, 997
BstYI RGATCY 2 cut(s) 343, 997
BsuRI GGCC 4 cut(s) 209, 563, 803, 966
BtsCI GGATG 2 cut(s) 292, 377
BtsIMutI CAGTG 1 cut(s) 741
Cac8I GCNNGC 2 cut(s) 211, 993
CaiI CAGNNNCTG 1 cut(s) 1001
CciI TCATGA 1 cut(s) 843
CfoI GCGC 1 cut(s) 105
Cfr13I GGNCC 1 cut(s) 599
Csp6I GTAC 3 cut(s) 435, 625, 673
CviAII CATG 7 cut(s) 26, 182, 234, 586, 682, 805, 844
CviQI GTAC 3 cut(s) 435, 625, 673
DdeI CTNAG 7 cut(s) 41, 390, 456, 720, 744, 879, 912
DpnI GATC 5 cut(s) 345, 461, 612, 821, 999
DpnII GATC 5 cut(s) 343, 459, 610, 819, 997
EaeI YGGCCR 1 cut(s) 207
Eam1104I CTCTTC 1 cut(s) 638
EarI CTCTTC 1 cut(s) 638
Eco130I CCWWGG 2 cut(s) 118, 580
Eco147I AGGCCT 2 cut(s) 563, 966
Eco31I GGTCTC 1 cut(s) 640
Eco47I GGWCC 1 cut(s) 599
Eco88I CYCGRG 1 cut(s) 986
EcoT14I CCWWGG 2 cut(s) 118, 580
ErhI CCWWGG 2 cut(s) 118, 580
FaeI CATG 7 cut(s) 29, 185, 237, 589, 685, 808, 847
FaqI GGGAC 1 cut(s) 56
FatI CATG 7 cut(s) 25, 181, 233, 585, 681, 804, 843
Fnu4HI GCNGC 1 cut(s) 17
FokI GGATG 2 cut(s) 279, 364
Fsp4HI GCNGC 1 cut(s) 17
FspBI CTAG 2 cut(s) 362, 992
GlaI GCGC 1 cut(s) 104
GluI GCNGC 1 cut(s) 17
HaeIII GGCC 4 cut(s) 209, 563, 803, 966
HapII CCGG 1 cut(s) 225
HhaI GCGC 1 cut(s) 105
Hin1II CATG 7 cut(s) 29, 185, 237, 589, 685, 808, 847
Hin6I GCGC 1 cut(s) 103
HinP1I GCGC 1 cut(s) 103
HincII GTYRAC 2 cut(s) 517, 898
HindII GTYRAC 2 cut(s) 517, 898
HinfI GANTC 6 cut(s) 191, 265, 399, 446, 488, 982
HpaI GTTAAC 2 cut(s) 517, 898
HpaII CCGG 1 cut(s) 225
Hpy166II GTNNAC 3 cut(s) 517, 703, 898
Hpy188I TCNGA 2 cut(s) 196, 872
Hpy188III TCNNGA 5 cut(s) 368, 389, 667, 844, 986
Hpy8I GTNNAC 3 cut(s) 517, 703, 898
HpyAV CCTTC 3 cut(s) 107, 435, 679
HpyCH4III ACNGT 2 cut(s) 275, 764
HpyCH4IV ACGT 1 cut(s) 836
HpyCH4V TGCA 1 cut(s) 474
HpyF10VI GCNNNNNNNGC 1 cut(s) 129
HpyF3I CTNAG 7 cut(s) 41, 390, 456, 720, 744, 879, 912
HpySE526I ACGT 1 cut(s) 836
Hsp92II CATG 7 cut(s) 29, 185, 237, 589, 685, 808, 847
HspAI GCGC 1 cut(s) 103
KspAI GTTAAC 2 cut(s) 517, 898
Kzo9I GATC 5 cut(s) 343, 459, 610, 819, 997
LweI GCATC 1 cut(s) 386
MaeI CTAG 2 cut(s) 362, 992
MaeII ACGT 1 cut(s) 836
MalI GATC 5 cut(s) 345, 461, 612, 821, 999
MboI GATC 5 cut(s) 343, 459, 610, 819, 997
MboII GAAGA 5 cut(s) 41, 528, 655, 701, 956
MflI RGATCY 2 cut(s) 343, 997
MhlI GDGCHC 1 cut(s) 134
MlsI TGGCCA 1 cut(s) 209
MluCI AATT 3 cut(s) 113, 438, 451
MluNI TGGCCA 1 cut(s) 209
MlyI GAGTC 4 cut(s) 185, 393, 455, 482
MmeI TCCRAC 4 cut(s) 219, 321, 333, 795
Mox20I TGGCCA 1 cut(s) 209
MscI TGGCCA 1 cut(s) 209
MseI TTAA 3 cut(s) 441, 516, 897
MslI CAYNNNNRTG 2 cut(s) 180, 203
Msp20I TGGCCA 1 cut(s) 209
MspI CCGG 1 cut(s) 225
MwoI GCNNNNNNNGC 1 cut(s) 129
NdeII GATC 5 cut(s) 343, 459, 610, 819, 997
NheI GCTAGC 1 cut(s) 991
NlaIII CATG 7 cut(s) 29, 185, 237, 589, 685, 808, 847
NlaIV GGNNCC 1 cut(s) 131
NspV TTCGAA 1 cut(s) 279
PagI TCATGA 1 cut(s) 843
PceI AGGCCT 2 cut(s) 563, 966
PfeI GAWTC 2 cut(s) 265, 982
PkrI GCNGC 1 cut(s) 18
PleI GAGTC 4 cut(s) 185, 393, 454, 482
PpsI GAGTC 4 cut(s) 185, 393, 454, 482
Psp1406I AACGTT 1 cut(s) 836
PspN4I GGNNCC 1 cut(s) 131
PspPI GGNCC 1 cut(s) 599
PstNI CAGNNNCTG 1 cut(s) 1001
PsuI RGATCY 2 cut(s) 343, 997
RsaI GTAC 3 cut(s) 436, 626, 674
RsaNI GTAC 3 cut(s) 435, 625, 673
RseI CAYNNNNRTG 2 cut(s) 180, 203
SaqAI TTAA 3 cut(s) 441, 516, 897
SatI GCNGC 1 cut(s) 17
Sau3AI GATC 5 cut(s) 343, 459, 610, 819, 997
Sau96I GGNCC 1 cut(s) 599
SchI GAGTC 4 cut(s) 185, 393, 455, 482
SduI GDGCHC 1 cut(s) 134
SetI ASST 8 cut(s) 42, 363, 652, 789, 839, 880, 885, 993
SfaNI GCATC 1 cut(s) 386
SfuI TTCGAA 1 cut(s) 279
SinI GGWCC 1 cut(s) 599
SmiMI CAYNNNNRTG 2 cut(s) 180, 203
Sse9I AATT 3 cut(s) 113, 438, 451
SseBI AGGCCT 2 cut(s) 563, 966
SsiI CCGC 2 cut(s) 17, 530
SspMI CTAG 2 cut(s) 362, 992
StuI AGGCCT 2 cut(s) 563, 966
StyI CCWWGG 2 cut(s) 118, 580
TaaI ACNGT 2 cut(s) 275, 764
TaiI ACGT 1 cut(s) 839
TaqI TCGA 3 cut(s) 268, 279, 486
TasI AATT 3 cut(s) 113, 438, 451
TauI GCSGC 1 cut(s) 19
TfiI GAWTC 2 cut(s) 265, 982
Tru1I TTAA 3 cut(s) 441, 516, 897
Tru9I TTAA 3 cut(s) 441, 516, 897
TscAI CASTG 1 cut(s) 748
TspDTI ATGAA 5 cut(s) 42, 528, 698, 821, 860
TspGWI ACGGA 1 cut(s) 515
TspRI CASTG 1 cut(s) 748
VpaK11BI GGWCC 1 cut(s) 599
XcmI CCANNNNNNNNNTGG 1 cut(s) 811
XspI CTAG 2 cut(s) 362, 992
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.