MD09G1281700.v1.1

protein DJ-1 homolog D-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr09
OG0020364
Physical Location & Seq
Forward (+)
35872207 .. 35873500
1294 bp
Loading structure...
UTR
Exon/CDS
Intron
MD09G1281700.v1.1.491

Sequence Viewer

Length: 312 bp
ATGGAAGAGTATGAGGTGGTGGTCCGGTTTCAAGCATTGCAGGCGTTTGGAGTGTCCGTAGATGCGGTCTGCCCTGGCAAGAAATCTGGTGACATCTGCCCCACCGCCATTCATCAACATTCTACTTCTCAGTTTCTCACCAGGTCAATCAACCACCTCTATTTTAAATACTACGATGGACTAGTAATATCAGGAGGGCGATCTCCTGAGTATCTTGCTGTGGATGCATACGTTGTAGAATTGGTGAGAAAGTTTTCCGACTCCAAAAAGCCAATTGCTTCTACTTGTCATGGCAGCTGCAGACTCGATTAG

Protein Analysis

104

Amino Acids

11.43

Weight (kDa)

6.89

Isoelectric Point (pI)

42.02

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DJ-1_PfpI PF01965 1 - 99 4.9e-15 DJ-1/PfpI family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0020364)

Species Orthologous Gene IDs
malus_domestica MD09G1281700.v1.1
rosa_chinensis RchiOBHm_Chr3g0487841
rosa_roxburghii Rroxscaffold_3G00252290 Rroxscaffold_6G00394410
rosa_samantha Rh3BG322100 Rh3CG320400

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 65, 105
AgsI TTSAA 1 cut(s) 32
AhlI ACTAGT 1 cut(s) 181
AjnI CCWGG 2 cut(s) 73, 140
AluBI AGCT 1 cut(s) 297
AluI AGCT 1 cut(s) 297
ApeKI GCWGC 2 cut(s) 294, 297
Asp700I GAANNNNTTC 1 cut(s) 253
AspS9I GGNCC 1 cut(s) 22
AsuHPI GGTGA 3 cut(s) 101, 130, 256
AvaII GGWCC 1 cut(s) 22
BbvI GCAGC 2 cut(s) 284, 306
BccI CCATC 1 cut(s) 170
BciT130I CCWGG 2 cut(s) 75, 142
BcuI ACTAGT 1 cut(s) 181
BfaI CTAG 1 cut(s) 182
BfmI CTRYAG 1 cut(s) 298
BisI GCNGC 2 cut(s) 295, 298
BlsI GCNGC 2 cut(s) 296, 299
Bme1390I CCNGG 2 cut(s) 75, 142
Bme18I GGWCC 1 cut(s) 22
BmgT120I GGNCC 1 cut(s) 22
BmrFI CCNGG 2 cut(s) 75, 142
BmsI GCATC 2 cut(s) 52, 214
BsaJI CCNNGG 1 cut(s) 73
BsaWI WCCGGW 1 cut(s) 24
BsaXI ACNNNNNCTCC 2 cut(s) 42, 72
Bse3DI GCAATG 1 cut(s) 35
BseBI CCWGG 2 cut(s) 75, 142
BseDI CCNNGG 1 cut(s) 73
BseGI GGATG 1 cut(s) 229
BseMI GCAATG 1 cut(s) 35
BseMII CTCAG 2 cut(s) 143, 198
BseXI GCAGC 2 cut(s) 284, 306
BsiSI CCGG 1 cut(s) 25
Bsp143I GATC 1 cut(s) 200
BspACI CCGC 2 cut(s) 65, 105
BspCNI CTCAG 2 cut(s) 142, 199
BspMAI CTGCAG 1 cut(s) 302
BsrDI GCAATG 1 cut(s) 35
BssECI CCNNGG 1 cut(s) 73
BssMI GATC 1 cut(s) 200
Bst2UI CCWGG 2 cut(s) 75, 142
BstC8I GCNNGC 1 cut(s) 42
BstDEI CTNAG 2 cut(s) 129, 207
BstF5I GGATG 1 cut(s) 229
BstKTI GATC 1 cut(s) 203
BstMBI GATC 1 cut(s) 200
BstMWI GCNNNNNNNGC 2 cut(s) 41, 224
BstNI CCWGG 2 cut(s) 75, 142
BstSCI CCNGG 2 cut(s) 73, 140
BstSFI CTRYAG 1 cut(s) 298
BstV1I GCAGC 2 cut(s) 284, 306
BtsCI GGATG 1 cut(s) 229
Cac8I GCNNGC 1 cut(s) 42
Cfr13I GGNCC 1 cut(s) 22
CsiI ACCWGGT 1 cut(s) 140
CviAII CATG 1 cut(s) 290
CviJI RGCY 2 cut(s) 271, 297
CviKI_1 RGCY 2 cut(s) 271, 297
DdeI CTNAG 2 cut(s) 129, 207
DpnI GATC 1 cut(s) 202
DpnII GATC 1 cut(s) 200
DraI TTTAAA 1 cut(s) 166
Eco47I GGWCC 1 cut(s) 22
EcoRII CCWGG 2 cut(s) 73, 140
EcoT22I ATGCAT 1 cut(s) 229
FaeI CATG 1 cut(s) 293
FaiI YATR 3 cut(s) 12, 229, 291
FatI CATG 1 cut(s) 289
Fnu4HI GCNGC 2 cut(s) 295, 298
FokI GGATG 1 cut(s) 236
Fsp4HI GCNGC 2 cut(s) 295, 298
FspBI CTAG 1 cut(s) 182
GluI GCNGC 2 cut(s) 295, 298
HapII CCGG 1 cut(s) 25
Hin1II CATG 1 cut(s) 293
HinfI GANTC 2 cut(s) 260, 303
HpaII CCGG 1 cut(s) 25
HphI GGTGA 3 cut(s) 101, 130, 256
Hpy188I TCNGA 1 cut(s) 259
Hpy188III TCNNGA 2 cut(s) 192, 206
HpyCH4IV ACGT 1 cut(s) 231
HpyCH4V TGCA 3 cut(s) 40, 227, 300
HpyF10VI GCNNNNNNNGC 2 cut(s) 41, 224
HpyF3I CTNAG 2 cut(s) 129, 207
HpySE526I ACGT 1 cut(s) 231
Hsp92II CATG 1 cut(s) 293
Kzo9I GATC 1 cut(s) 200
LpnPI CCDG 9 cut(s) 26, 38, 60, 72, 87, 127, 154, 177, 219
Lsp1109I GCAGC 2 cut(s) 284, 306
LweI GCATC 2 cut(s) 52, 214
MabI ACCWGGT 1 cut(s) 140
MaeI CTAG 1 cut(s) 182
MaeII ACGT 1 cut(s) 231
MaeIII GTNAC 1 cut(s) 89
MalI GATC 1 cut(s) 202
MboI GATC 1 cut(s) 200
MboII GAAGA 1 cut(s) 17
MfeI CAATTG 1 cut(s) 273
MluCI AATT 2 cut(s) 239, 273
MlyI GAGTC 2 cut(s) 254, 297
MmeI TCCRAC 1 cut(s) 282
MnlI CCTC 3 cut(s) 7, 167, 188
Mph1103I ATGCAT 1 cut(s) 229
MroXI GAANNNNTTC 1 cut(s) 253
MseI TTAA 1 cut(s) 165
MspA1I CMGCKG 1 cut(s) 297
MspI CCGG 1 cut(s) 25
MspR9I CCNGG 2 cut(s) 75, 142
MunI CAATTG 1 cut(s) 273
MvaI CCWGG 2 cut(s) 75, 142
MwoI GCNNNNNNNGC 2 cut(s) 41, 224
NdeII GATC 1 cut(s) 200
NlaIII CATG 1 cut(s) 293
NmuCI GTSAC 1 cut(s) 89
NsiI ATGCAT 1 cut(s) 229
PdmI GAANNNNTTC 1 cut(s) 253
PkrI GCNGC 2 cut(s) 296, 299
PleI GAGTC 2 cut(s) 254, 297
PpsI GAGTC 2 cut(s) 254, 297
Psp6I CCWGG 2 cut(s) 73, 140
PspGI CCWGG 2 cut(s) 73, 140
PspPI GGNCC 1 cut(s) 22
PstI CTGCAG 1 cut(s) 302
PvuII CAGCTG 1 cut(s) 297
SaqAI TTAA 1 cut(s) 165
SatI GCNGC 2 cut(s) 295, 298
Sau3AI GATC 1 cut(s) 200
Sau96I GGNCC 1 cut(s) 22
SchI GAGTC 2 cut(s) 254, 297
ScrFI CCNGG 2 cut(s) 75, 142
SetI ASST 5 cut(s) 18, 146, 159, 234, 299
SexAI ACCWGGT 1 cut(s) 140
SfaNI GCATC 2 cut(s) 52, 214
SfcI CTRYAG 1 cut(s) 298
SinI GGWCC 1 cut(s) 22
SpeI ACTAGT 1 cut(s) 181
Sse9I AATT 2 cut(s) 239, 273
SsiI CCGC 2 cut(s) 65, 105
SspMI CTAG 1 cut(s) 182
StyD4I CCNGG 2 cut(s) 73, 140
TaiI ACGT 1 cut(s) 234
TaqI TCGA 1 cut(s) 306
TasI AATT 2 cut(s) 239, 273
Tru1I TTAA 1 cut(s) 165
Tru9I TTAA 1 cut(s) 165
TseFI GTSAC 1 cut(s) 89
TseI GCWGC 2 cut(s) 294, 297
Tsp45I GTSAC 1 cut(s) 89
TspDTI ATGAA 1 cut(s) 101
TspGWI ACGGA 1 cut(s) 46
VpaK11BI GGWCC 1 cut(s) 22
XmnI GAANNNNTTC 1 cut(s) 253
XspI CTAG 1 cut(s) 182
Zsp2I ATGCAT 1 cut(s) 229
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.