Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3B

Orthogroup ID

OG0020364

Physical Location & Seq

Genomic Coordinates Reverse (-)

33190917 .. 33191398

Gene Structure 482 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3BG322100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 279 bp

ATGGAAAACATAGAACAAGAAAGGGACACGAAAACGTGGAGCGGGAAAGGTGAACGTCGTGTTCTGTTACTATGCGGGGACCATGAGGCCATGGTCCCTGTTCAAGCACTGCAGGCCTATGGAGTCACTGTTGACGCCGTCTGCCCCGATAGGAAAGCCAGTGGCTACTGTAGCACCGCCATTCATCAATACACTTCTGCTCACCAGACTCATCCGGAATCACGTGGTCACAACTTTGCTCTAAATGCAACGTTTGATGACATTGCATATACCAACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0006081 GO:0006082 GO:0006089 GO:0008150 GO:0008152 GO:0009056 GO:0009058 GO:0009438 GO:0009987 GO:0016053 GO:0016829 GO:0016835 GO:0016836 GO:0019172 GO:0019249 GO:0019752 GO:0032787 GO:0042180 GO:0042182 GO:0043436 GO:0044237 GO:0044248 GO:0044249 GO:0044281 GO:0044282 GO:0044283 GO:0046185 GO:0046394 GO:0051596 GO:0061727 GO:0071704 GO:0072330 GO:1901575 GO:1901576 GO:1901615 GO:1901617

KEGG Pathways

Metabolic & Signaling

ko00620 ko01120 map00620 map01120

Pfam Domains

Protein Families

DJ-1_PfpI

Protein Analysis

92

Amino Acids

10.23

Weight (kDa)

5.62

Isoelectric Point (pI)

32.29

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0020364)

Species	Orthologous Gene IDs
malus_domestica	MD09G1281700.v1.1
rosa_chinensis	RchiOBHm_Chr3g0487841
rosa_roxburghii	Rroxscaffold_3G00252290 Rroxscaffold_6G00394410
rosa_samantha	Rh3BG322100 Rh3CG320400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	42
AccIII	TCCGGA	1 cut(s)	214
AciI	CCGC	3 cut(s)	42, 75, 177
AclI	AACGTT	1 cut(s)	251
AcvI	CACGTG	1 cut(s)	224
AcyI	GRCGYC	1 cut(s)	135
AgsI	TTSAA	1 cut(s)	104
Aor13HI	TCCGGA	1 cut(s)	214
AoxI	GGCC	2 cut(s)	87, 114
AspS9I	GGNCC	2 cut(s)	79, 94
AsuHPI	GGTGA	2 cut(s)	62, 194
AvaII	GGWCC	2 cut(s)	79, 94
BbrPI	CACGTG	1 cut(s)	224
BceAI	ACGGC	1 cut(s)	122
BfmI	CTRYAG	2 cut(s)	110, 169
Bme18I	GGWCC	2 cut(s)	79, 94
BmgT120I	GGNCC	2 cut(s)	79, 94
BmiI	GGNNCC	2 cut(s)	80, 96
BsaAI	YACGTR	1 cut(s)	224
BsaHI	GRCGYC	1 cut(s)	135
BsaJI	CCNNGG	1 cut(s)	90
BsaWI	WCCGGW	1 cut(s)	214
BsaXI	ACNNNNNCTCC	2 cut(s)	114, 144
Bse1I	ACTGG	1 cut(s)	159
Bse3DI	GCAATG	1 cut(s)	261
BseAI	TCCGGA	1 cut(s)	214
BseDI	CCNNGG	1 cut(s)	90
BseGI	GGATG	1 cut(s)	211
BseMI	GCAATG	1 cut(s)	261
BseNI	ACTGG	1 cut(s)	159
BshFI	GGCC	2 cut(s)	89, 116
BsiSI	CCGG	1 cut(s)	215
BslFI	GGGAC	3 cut(s)	38, 80, 92
BsmFI	GGGAC	3 cut(s)	38, 80, 92
BsnI	GGCC	2 cut(s)	89, 116
Bsp13I	TCCGGA	1 cut(s)	214
Bsp19I	CCATGG	1 cut(s)	90
BspACI	CCGC	3 cut(s)	42, 75, 177
BspANI	GGCC	2 cut(s)	89, 116
BspEI	TCCGGA	1 cut(s)	214
BspLI	GGNNCC	2 cut(s)	80, 96
BspMAI	CTGCAG	1 cut(s)	114
BsrBI	CCGCTC	1 cut(s)	42
BsrDI	GCAATG	1 cut(s)	261
BsrI	ACTGG	1 cut(s)	159
BssECI	CCNNGG	1 cut(s)	90
BssNI	GRCGYC	1 cut(s)	135
BssT1I	CCWWGG	1 cut(s)	90
Bst4CI	ACNGT	2 cut(s)	130, 170
BstACI	GRCGYC	1 cut(s)	135
BstBAI	YACGTR	1 cut(s)	224
BstC8I	GCNNGC	1 cut(s)	114
BstDSI	CCRYGG	1 cut(s)	90
BstF5I	GGATG	1 cut(s)	211
BstMWI	GCNNNNNNNGC	3 cut(s)	113, 171, 245
BstSFI	CTRYAG	2 cut(s)	110, 169
BsuRI	GGCC	2 cut(s)	89, 116
BtgI	CCRYGG	1 cut(s)	90
BtsCI	GGATG	1 cut(s)	211
BtsI	GCAGTG	1 cut(s)	107
BtsIMutI	CAGTG	3 cut(s)	107, 126, 166
Cac8I	GCNNGC	1 cut(s)	114
Cfr13I	GGNCC	2 cut(s)	79, 94
CseI	GACGC	1 cut(s)	143
CviAII	CATG	2 cut(s)	83, 91
CviJI	RGCY	4 cut(s)	89, 116, 158, 165
CviKI_1	RGCY	4 cut(s)	89, 116, 158, 165
Eco130I	CCWWGG	1 cut(s)	90
Eco147I	AGGCCT	1 cut(s)	116
Eco47I	GGWCC	2 cut(s)	79, 94
Eco72I	CACGTG	1 cut(s)	224
EcoT14I	CCWWGG	1 cut(s)	90
ErhI	CCWWGG	1 cut(s)	90
FaeI	CATG	2 cut(s)	86, 94
FaiI	YATR	7 cut(s)	11, 73, 84, 92, 120, 268, 270
FaqI	GGGAC	3 cut(s)	38, 80, 92
FatI	CATG	2 cut(s)	82, 90
FauI	CCCGC	2 cut(s)	35, 68
FokI	GGATG	1 cut(s)	198
HaeIII	GGCC	2 cut(s)	89, 116
HapII	CCGG	1 cut(s)	215
HgaI	GACGC	1 cut(s)	143
Hin1I	GRCGYC	1 cut(s)	135
Hin1II	CATG	2 cut(s)	86, 94
HincII	GTYRAC	1 cut(s)	133
HindII	GTYRAC	1 cut(s)	133
HinfI	GANTC	3 cut(s)	123, 208, 218
HpaII	CCGG	1 cut(s)	215
HphI	GGTGA	2 cut(s)	62, 194
Hpy166II	GTNNAC	2 cut(s)	53, 133
Hpy188III	TCNNGA	1 cut(s)	215
Hpy8I	GTNNAC	2 cut(s)	53, 133
Hpy99I	CGWCG	1 cut(s)	60
HpyCH4III	ACNGT	2 cut(s)	130, 170
HpyCH4IV	ACGT	4 cut(s)	35, 55, 223, 251
HpyCH4V	TGCA	3 cut(s)	112, 248, 266
HpyF10VI	GCNNNNNNNGC	3 cut(s)	113, 171, 245
HpySE526I	ACGT	4 cut(s)	35, 55, 223, 251
Hsp92I	GRCGYC	1 cut(s)	135
Hsp92II	CATG	2 cut(s)	86, 94
Kpn2I	TCCGGA	1 cut(s)	214
LmnI	GCTCC	1 cut(s)	39
LpnPI	CCDG	5 cut(s)	98, 111, 172, 218, 228
MaeII	ACGT	4 cut(s)	35, 55, 223, 251
MaeIII	GTNAC	3 cut(s)	66, 124, 227
MbiI	CCGCTC	1 cut(s)	42
MlyI	GAGTC	2 cut(s)	132, 202
MnlI	CCTC	1 cut(s)	79
MroI	TCCGGA	1 cut(s)	214
MspI	CCGG	1 cut(s)	215
MwoI	GCNNNNNNNGC	3 cut(s)	113, 171, 245
NcoI	CCATGG	1 cut(s)	90
NlaIII	CATG	2 cut(s)	86, 94
NlaIV	GGNNCC	2 cut(s)	80, 96
NmuCI	GTSAC	2 cut(s)	124, 227
PceI	AGGCCT	1 cut(s)	116
PfeI	GAWTC	1 cut(s)	218
PflFI	GACNNNGTC	1 cut(s)	137
PleI	GAGTC	2 cut(s)	131, 202
PmaCI	CACGTG	1 cut(s)	224
PmlI	CACGTG	1 cut(s)	224
PpsI	GAGTC	2 cut(s)	131, 202
Ppu21I	YACGTR	1 cut(s)	224
Psp1406I	AACGTT	1 cut(s)	251
PspCI	CACGTG	1 cut(s)	224
PspN4I	GGNNCC	2 cut(s)	80, 96
PspPI	GGNCC	2 cut(s)	79, 94
PstI	CTGCAG	1 cut(s)	114
PsyI	GACNNNGTC	1 cut(s)	137
Sau96I	GGNCC	2 cut(s)	79, 94
SchI	GAGTC	2 cut(s)	132, 202
SetI	ASST	5 cut(s)	38, 52, 58, 226, 254
SfcI	CTRYAG	2 cut(s)	110, 169
SinI	GGWCC	2 cut(s)	79, 94
SseBI	AGGCCT	1 cut(s)	116
SsiI	CCGC	3 cut(s)	42, 75, 177
StuI	AGGCCT	1 cut(s)	116
StyI	CCWWGG	1 cut(s)	90
TaaI	ACNGT	2 cut(s)	130, 170
TaiI	ACGT	4 cut(s)	38, 58, 226, 254
TfiI	GAWTC	1 cut(s)	218
TscAI	CASTG	3 cut(s)	114, 133, 166
TseFI	GTSAC	2 cut(s)	124, 227
Tsp45I	GTSAC	2 cut(s)	124, 227
TspDTI	ATGAA	1 cut(s)	173
TspRI	CASTG	3 cut(s)	114, 133, 166
Tth111I	GACNNNGTC	1 cut(s)	137
VpaK11BI	GGWCC	2 cut(s)	79, 94

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.