Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000006

Orthogroup ID

OG0020364

Physical Location & Seq

Genomic Coordinates Forward (+)

14897154 .. 14898800

Gene Structure 1647 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_6G00394410.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 843 bp

ATGTGGAGCGGGAAAGGTGAACGTCGCGTTCTGTTACTATGCAGGGACTACATGGAAGACCACGAGTCAATGGTCCCCTTTCAAGCACTGCAGGCCTATGGAGTCACTGTCGACGGCGTCTGTCCCGGCAAAAAAAAGCCGACTCATCCGGAATCACGTGGTCACAACTTTGCTCTGAATGCAACGTTTGATGACATTGAATACAGCAACTATGATGGAATAATAATCCCCGGAGGACGATCTCTCGAGTATCTTGCTATGGATGCATCGGTTTTAGAATTGGTCAACAAGCTTGCCGCGTCCAGGAAGATAATTGCTGCTATATGCCGTGGGGTATTGGTCGTAGCAGCTGCAGGCTTGGTTAAGGGGCGAAAGTGCACAGGGTTCCCACCTATGAGACCTGTACTCCTTGCTGGGGGTGCTCATTGGGTGGAACCTGATACCATGGGGACGTGTATCGCAGATGGTAATATAATTACTGGGGTTACATTTGAAGGTAATGCGGAGTTCATCAGGCTTTTTGTCAAGGCATTGGGAGGCCACATAATTAGTTCAGAGAGAAGAATCCTGTTTCTCTGTGGAGACTTCATGGAAGATTATGAGATAACTGTGCCTTTTCTGTCACTTCAAGCACTTGGATGCCATGTTGATGCAGTTTGCCCCAAGAGGAAAGCTAGTGATGTATGTGCAACTGCAGTCCATGATTTTGAAGATGCCACAAGGGACGATGCTCTTGTAGTTCCTGGAGGTCGTGCCCCAGAGTATTTGGCATTGAATGAGGATGTAATTTGTAACGTCCTGAACCTTAGACGTTCACTCATTAGACGTTCACTCATTAACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0006081 GO:0006082 GO:0006089 GO:0008150 GO:0008152 GO:0009056 GO:0009058 GO:0009438 GO:0009987 GO:0016053 GO:0016829 GO:0016835 GO:0016836 GO:0019172 GO:0019249 GO:0019752 GO:0032787 GO:0042180 GO:0042182 GO:0043436 GO:0044237 GO:0044248 GO:0044249 GO:0044281 GO:0044282 GO:0044283 GO:0046185 GO:0046394 GO:0051596 GO:0061727 GO:0071704 GO:0072330 GO:1901575 GO:1901576 GO:1901615 GO:1901617

KEGG Pathways

Metabolic & Signaling

ko00620 ko01120 map00620 map01120

Pfam Domains

Protein Families

DJ-1_PfpI

Protein Analysis

280

Amino Acids

30.54

Weight (kDa)

5.99

Isoelectric Point (pI)

48.52

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DJ-1_PfpI	PF01965	8 - 176	9.3e-39	DJ-1/PfpI family
DJ-1_PfpI	PF01965	187 - 263	5.9e-11	DJ-1/PfpI family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0020364)

Species	Orthologous Gene IDs
malus_domestica	MD09G1281700.v1.1
rosa_chinensis	RchiOBHm_Chr3g0487841
rosa_roxburghii	Rroxscaffold_3G00252290 Rroxscaffold_6G00394410
rosa_samantha	Rh3BG322100 Rh3CG320400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	9
AccI	GTMKAC	1 cut(s)	111
AccII	CGCG	2 cut(s)	27, 299
AccIII	TCCGGA	1 cut(s)	148
AciI	CCGC	3 cut(s)	9, 297, 503
AclI	AACGTT	1 cut(s)	185
AcvI	CACGTG	1 cut(s)	158
AcyI	GRCGYC	1 cut(s)	117
AfaI	GTAC	1 cut(s)	405
AfiI	CCNNNNNNNGG	2 cut(s)	303, 415
AflIII	ACRYGT	1 cut(s)	452
AgsI	TTSAA	6 cut(s)	83, 200, 494, 629, 710, 775
AhdI	GACNNNNNGTC	1 cut(s)	64
AjiI	CACGTC	1 cut(s)	453
AjnI	CCWGG	2 cut(s)	302, 742
AluBI	AGCT	3 cut(s)	292, 350, 674
AluI	AGCT	3 cut(s)	292, 350, 674
Alw21I	GWGCWC	2 cut(s)	380, 424
Alw26I	GTCTC	2 cut(s)	391, 576
Alw44I	GTGCAC	1 cut(s)	376
Ama87I	CYCGRG	1 cut(s)	245
Aor13HI	TCCGGA	1 cut(s)	148
AoxI	GGCC	2 cut(s)	93, 538
ApaLI	GTGCAC	1 cut(s)	376
ApeKI	GCWGC	3 cut(s)	317, 347, 350
AspS9I	GGNCC	1 cut(s)	73
AsuC2I	CCSGG	2 cut(s)	126, 231
AsuHPI	GGTGA	1 cut(s)	29
AvaI	CYCGRG	1 cut(s)	245
AvaII	GGWCC	1 cut(s)	73
BaeGI	GKGCMC	2 cut(s)	380, 757
BauI	CACGAG	1 cut(s)	62
BbrPI	CACGTG	1 cut(s)	158
BbsI	GAAGAC	1 cut(s)	63
Bbv12I	GWGCWC	2 cut(s)	380, 424
BbvI	GCAGC	3 cut(s)	304, 337, 359
BccI	CCATC	2 cut(s)	209, 458
BceAI	ACGGC	2 cut(s)	130, 312
BcgI	CGANNNNNNTGC	2 cut(s)	236, 270
BciT130I	CCWGG	2 cut(s)	304, 744
BcnI	CCSGG	2 cut(s)	126, 231
BcoDI	GTCTC	2 cut(s)	391, 576
BfaI	CTAG	2 cut(s)	675, 841
BfmI	CTRYAG	3 cut(s)	89, 351, 693
BisI	GCNGC	4 cut(s)	297, 318, 348, 351
BlsI	GCNGC	4 cut(s)	298, 319, 349, 352
Bme1390I	CCNGG	4 cut(s)	126, 231, 304, 744
Bme18I	GGWCC	1 cut(s)	73
BmeRI	GACNNNNNGTC	1 cut(s)	64
BmeT110I	CYCGRG	1 cut(s)	245
BmgBI	CACGTC	1 cut(s)	453
BmgT120I	GGNCC	1 cut(s)	73
BmiI	GGNNCC	3 cut(s)	75, 386, 435
BmrFI	CCNGG	4 cut(s)	126, 231, 304, 744
BmrI	ACTGGG	1 cut(s)	489
BmsI	GCATC	6 cut(s)	253, 275, 629, 640, 703, 718
BmuI	ACTGGG	1 cut(s)	489
BpiI	GAAGAC	1 cut(s)	63
BpmI	CTGGAG	1 cut(s)	765
BpuMI	CCSGG	2 cut(s)	126, 231
BsaAI	YACGTR	1 cut(s)	158
BsaHI	GRCGYC	1 cut(s)	117
BsaI	GGTCTC	1 cut(s)	391
BsaJI	CCNNGG	3 cut(s)	229, 328, 444
BsaWI	WCCGGW	1 cut(s)	148
BsaXI	ACNNNNNCTCC	4 cut(s)	93, 123, 390, 420
Bsc4I	CCNNNNNNNGG	2 cut(s)	303, 415
Bse1I	ACTGG	1 cut(s)	484
BseAI	TCCGGA	1 cut(s)	148
BseBI	CCWGG	2 cut(s)	304, 744
BseDI	CCNNGG	3 cut(s)	229, 328, 444
BseGI	GGATG	4 cut(s)	145, 268, 644, 787
BseLI	CCNNNNNNNGG	2 cut(s)	303, 415
BseNI	ACTGG	1 cut(s)	484
BseSI	GKGCMC	2 cut(s)	380, 757
BseXI	GCAGC	3 cut(s)	304, 337, 359
BseYI	CCCAGC	1 cut(s)	413
Bsh1236I	CGCG	2 cut(s)	27, 299
BshFI	GGCC	2 cut(s)	95, 540
BsiHKAI	GWGCWC	2 cut(s)	380, 424
BsiHKCI	CYCGRG	1 cut(s)	245
BsiSI	CCGG	3 cut(s)	126, 149, 231
BslFI	GGGAC	5 cut(s)	59, 59, 108, 463, 737
BslI	CCNNNNNNNGG	2 cut(s)	303, 415
BsmAI	GTCTC	2 cut(s)	391, 576
BsmFI	GGGAC	5 cut(s)	59, 59, 108, 463, 737
BsmI	GAATGC	1 cut(s)	184
BsnI	GGCC	2 cut(s)	95, 540
Bso31I	GGTCTC	1 cut(s)	391
BsoBI	CYCGRG	1 cut(s)	245
Bsp1286I	GDGCHC	3 cut(s)	380, 424, 757
Bsp13I	TCCGGA	1 cut(s)	148
Bsp143I	GATC	1 cut(s)	239
Bsp19I	CCATGG	1 cut(s)	444
BspACI	CCGC	3 cut(s)	9, 297, 503
BspANI	GGCC	2 cut(s)	95, 540
BspEI	TCCGGA	1 cut(s)	148
BspFNI	CGCG	2 cut(s)	27, 299
BspLI	GGNNCC	3 cut(s)	75, 386, 435
BspMAI	CTGCAG	3 cut(s)	93, 355, 697
BspTNI	GGTCTC	1 cut(s)	391
BsrBI	CCGCTC	1 cut(s)	9
BsrI	ACTGG	1 cut(s)	484
BssECI	CCNNGG	3 cut(s)	229, 328, 444
BssMI	GATC	1 cut(s)	239
BssNI	GRCGYC	1 cut(s)	117
BssSI	CACGAG	1 cut(s)	62
BssT1I	CCWWGG	1 cut(s)	444
Bst2BI	CACGAG	1 cut(s)	62
Bst2UI	CCWGG	2 cut(s)	304, 744
Bst4CI	ACNGT	2 cut(s)	109, 610
BstACI	GRCGYC	1 cut(s)	117
BstBAI	YACGTR	1 cut(s)	158
BstC8I	GCNNGC	3 cut(s)	93, 294, 355
BstDEI	CTNAG	1 cut(s)	806
BstDSI	CCRYGG	2 cut(s)	328, 444
BstF5I	GGATG	4 cut(s)	145, 268, 644, 787
BstFNI	CGCG	2 cut(s)	27, 299
BstKTI	GATC	1 cut(s)	242
BstMAI	GTCTC	2 cut(s)	391, 576
BstMBI	GATC	1 cut(s)	239
BstMWI	GCNNNNNNNGC	4 cut(s)	92, 179, 263, 419
BstNI	CCWGG	2 cut(s)	304, 744
BstSCI	CCNGG	4 cut(s)	124, 229, 302, 742
BstSFI	CTRYAG	3 cut(s)	89, 351, 693
BstSLI	GKGCMC	2 cut(s)	380, 757
BstUI	CGCG	2 cut(s)	27, 299
BstV1I	GCAGC	3 cut(s)	304, 337, 359
BstV2I	GAAGAC	1 cut(s)	63
BsuRI	GGCC	2 cut(s)	95, 540
BtgI	CCRYGG	2 cut(s)	328, 444
BtrI	CACGTC	1 cut(s)	453
BtsCI	GGATG	4 cut(s)	145, 268, 644, 787
BtsI	GCAGTG	1 cut(s)	86
BtsIMutI	CAGTG	2 cut(s)	86, 105
Cac8I	GCNNGC	3 cut(s)	93, 294, 355
Cfr13I	GGNCC	1 cut(s)	73
CseI	GACGC	2 cut(s)	106, 288
Csp6I	GTAC	1 cut(s)	404
CviAII	CATG	5 cut(s)	52, 445, 589, 644, 701
CviJI	RGCY	8 cut(s)	95, 139, 292, 350, 357, 517, 540, 674
CviKI_1	RGCY	8 cut(s)	95, 139, 292, 350, 357, 517, 540, 674
CviQI	GTAC	1 cut(s)	404
DdeI	CTNAG	1 cut(s)	806
DpnI	GATC	1 cut(s)	241
DpnII	GATC	1 cut(s)	239
DriI	GACNNNNNGTC	1 cut(s)	64
Eam1105I	GACNNNNNGTC	1 cut(s)	64
Eco130I	CCWWGG	1 cut(s)	444
Eco147I	AGGCCT	1 cut(s)	95
Eco31I	GGTCTC	1 cut(s)	391
Eco47I	GGWCC	1 cut(s)	73
Eco72I	CACGTG	1 cut(s)	158
Eco88I	CYCGRG	1 cut(s)	245
EcoRII	CCWGG	2 cut(s)	302, 742
EcoT14I	CCWWGG	1 cut(s)	444
EcoT22I	ATGCAT	1 cut(s)	268
ErhI	CCWWGG	1 cut(s)	444
FaeI	CATG	5 cut(s)	55, 448, 592, 647, 704
FaqI	GGGAC	5 cut(s)	59, 59, 108, 463, 737
FatI	CATG	5 cut(s)	51, 444, 588, 643, 700
FauI	CCCGC	1 cut(s)	2
FblI	GTMKAC	1 cut(s)	111
Fnu4HI	GCNGC	4 cut(s)	297, 318, 348, 351
FokI	GGATG	4 cut(s)	132, 275, 651, 794
Fsp4HI	GCNGC	4 cut(s)	297, 318, 348, 351
FspBI	CTAG	2 cut(s)	675, 841
GluI	GCNGC	4 cut(s)	297, 318, 348, 351
GsaI	CCCAGC	1 cut(s)	417
GsuI	CTGGAG	1 cut(s)	765
HaeIII	GGCC	2 cut(s)	95, 540
HapII	CCGG	3 cut(s)	126, 149, 231
HgaI	GACGC	2 cut(s)	106, 288
Hin1I	GRCGYC	1 cut(s)	117
Hin1II	CATG	5 cut(s)	55, 448, 592, 647, 704
HincII	GTYRAC	2 cut(s)	112, 286
HindII	GTYRAC	2 cut(s)	112, 286
HindIII	AAGCTT	1 cut(s)	290
HinfI	GANTC	5 cut(s)	65, 102, 142, 152, 564
HpaII	CCGG	3 cut(s)	126, 149, 231
HphI	GGTGA	1 cut(s)	29
Hpy166II	GTNNAC	6 cut(s)	20, 112, 286, 378, 815, 830
Hpy188I	TCNGA	2 cut(s)	177, 556
Hpy188III	TCNNGA	3 cut(s)	149, 245, 799
Hpy8I	GTNNAC	6 cut(s)	20, 112, 286, 378, 815, 830
Hpy99I	CGWCG	2 cut(s)	27, 116
HpyAV	CCTTC	1 cut(s)	488
HpyCH4III	ACNGT	2 cut(s)	109, 610
HpyCH4IV	ACGT	7 cut(s)	22, 157, 185, 452, 795, 811, 826
HpyCH4V	TGCA	9 cut(s)	42, 91, 182, 266, 353, 378, 653, 689, 695
HpyF10VI	GCNNNNNNNGC	4 cut(s)	92, 179, 263, 419
HpyF3I	CTNAG	1 cut(s)	806
HpySE526I	ACGT	7 cut(s)	22, 157, 185, 452, 795, 811, 826
Hsp92I	GRCGYC	1 cut(s)	117
Hsp92II	CATG	5 cut(s)	55, 448, 592, 647, 704
Kpn2I	TCCGGA	1 cut(s)	148
Kzo9I	GATC	1 cut(s)	239
LmnI	GCTCC	1 cut(s)	6
Lsp1109I	GCAGC	3 cut(s)	304, 337, 359
LweI	GCATC	6 cut(s)	253, 275, 629, 640, 703, 718
MaeI	CTAG	2 cut(s)	675, 841
MaeII	ACGT	7 cut(s)	22, 157, 185, 452, 795, 811, 826
MaeIII	GTNAC	6 cut(s)	33, 103, 161, 484, 621, 791
MalI	GATC	1 cut(s)	241
MbiI	CCGCTC	1 cut(s)	9
MboI	GATC	1 cut(s)	239
MboII	GAAGA	5 cut(s)	68, 319, 573, 605, 722
MhlI	GDGCHC	3 cut(s)	380, 424, 757
MluCI	AATT	5 cut(s)	278, 312, 474, 546, 786
MlyI	GAGTC	3 cut(s)	74, 111, 136
MnlI	CCTC	5 cut(s)	227, 530, 660, 740, 772
Mph1103I	ATGCAT	1 cut(s)	268
MroI	TCCGGA	1 cut(s)	148
MseI	TTAA	2 cut(s)	363, 837
MslI	CAYNNNNRTG	2 cut(s)	637, 648
MspA1I	CMGCKG	1 cut(s)	350
MspI	CCGG	3 cut(s)	126, 149, 231
MspR9I	CCNGG	4 cut(s)	126, 231, 304, 744
Mva1269I	GAATGC	1 cut(s)	184
MvaI	CCWGG	2 cut(s)	304, 744
MvnI	CGCG	2 cut(s)	27, 299
MwoI	GCNNNNNNNGC	4 cut(s)	92, 179, 263, 419
NciI	CCSGG	2 cut(s)	126, 231
NcoI	CCATGG	1 cut(s)	444
NdeII	GATC	1 cut(s)	239
NlaIII	CATG	5 cut(s)	55, 448, 592, 647, 704
NlaIV	GGNNCC	3 cut(s)	75, 386, 435
NmuCI	GTSAC	3 cut(s)	103, 161, 621
NsiI	ATGCAT	1 cut(s)	268
PaeR7I	CTCGAG	1 cut(s)	245
PceI	AGGCCT	1 cut(s)	95
PctI	GAATGC	1 cut(s)	184
PfeI	GAWTC	2 cut(s)	152, 564
PflFI	GACNNNGTC	1 cut(s)	116
PfoI	TCCNGGA	2 cut(s)	302, 742
PkrI	GCNGC	4 cut(s)	298, 319, 349, 352
PleI	GAGTC	3 cut(s)	73, 110, 136
PmaCI	CACGTG	1 cut(s)	158
PmlI	CACGTG	1 cut(s)	158
PpsI	GAGTC	3 cut(s)	73, 110, 136
Ppu21I	YACGTR	1 cut(s)	158
Psp1406I	AACGTT	1 cut(s)	185
Psp6I	CCWGG	2 cut(s)	302, 742
PspCI	CACGTG	1 cut(s)	158
PspFI	CCCAGC	1 cut(s)	413
PspGI	CCWGG	2 cut(s)	302, 742
PspN4I	GGNNCC	3 cut(s)	75, 386, 435
PspPI	GGNCC	1 cut(s)	73
PstI	CTGCAG	3 cut(s)	93, 355, 697
PsyI	GACNNNGTC	1 cut(s)	116
PvuII	CAGCTG	1 cut(s)	350
RsaI	GTAC	1 cut(s)	405
RsaNI	GTAC	1 cut(s)	404
RseI	CAYNNNNRTG	2 cut(s)	637, 648
SalI	GTCGAC	1 cut(s)	110
SaqAI	TTAA	2 cut(s)	363, 837
SatI	GCNGC	4 cut(s)	297, 318, 348, 351
Sau3AI	GATC	1 cut(s)	239
Sau96I	GGNCC	1 cut(s)	73
SchI	GAGTC	3 cut(s)	74, 111, 136
ScrFI	CCNGG	4 cut(s)	126, 231, 304, 744
SduI	GDGCHC	3 cut(s)	380, 424, 757
SfaNI	GCATC	6 cut(s)	253, 275, 629, 640, 703, 718
SfcI	CTRYAG	3 cut(s)	89, 351, 693
Sfr274I	CTCGAG	1 cut(s)	245
SinI	GGWCC	1 cut(s)	73
SlaI	CTCGAG	1 cut(s)	245
SmiMI	CAYNNNNRTG	2 cut(s)	637, 648
SmlI	CTYRAG	1 cut(s)	245
SmoI	CTYRAG	1 cut(s)	245
Sse9I	AATT	5 cut(s)	278, 312, 474, 546, 786
SseBI	AGGCCT	1 cut(s)	95
SsiI	CCGC	3 cut(s)	9, 297, 503
SspMI	CTAG	2 cut(s)	675, 841
StuI	AGGCCT	1 cut(s)	95
StyD4I	CCNGG	4 cut(s)	124, 229, 302, 742
StyI	CCWWGG	1 cut(s)	444
TaaI	ACNGT	2 cut(s)	109, 610
TaiI	ACGT	7 cut(s)	25, 160, 188, 455, 798, 814, 829
TaqI	TCGA	2 cut(s)	111, 246
TasI	AATT	5 cut(s)	278, 312, 474, 546, 786
TatI	WGTACW	1 cut(s)	403
TauI	GCSGC	1 cut(s)	299
TfiI	GAWTC	2 cut(s)	152, 564
Tru1I	TTAA	2 cut(s)	363, 837
Tru9I	TTAA	2 cut(s)	363, 837
TscAI	CASTG	2 cut(s)	93, 112
TseFI	GTSAC	3 cut(s)	103, 161, 621
TseI	GCWGC	3 cut(s)	317, 347, 350
Tsp45I	GTSAC	3 cut(s)	103, 161, 621
TspDTI	ATGAA	2 cut(s)	499, 577
TspRI	CASTG	2 cut(s)	93, 112
Tth111I	GACNNNGTC	1 cut(s)	116
VneI	GTGCAC	1 cut(s)	376
VpaK11BI	GGWCC	1 cut(s)	73
XhoI	CTCGAG	1 cut(s)	245
XmiI	GTMKAC	1 cut(s)	111
XspI	CTAG	2 cut(s)	675, 841
Zsp2I	ATGCAT	1 cut(s)	268

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.