Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3C

Orthogroup ID

OG0020364

Physical Location & Seq

Genomic Coordinates Reverse (-)

34337074 .. 34349498

Gene Structure 12425 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3CG320400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 699 bp

ATGTGGAGCGGGAAAGGTGAACGTCGCGTTCTGTTACTATGCGGGGACTACATGGAAGACCACGAGGCCATGGTCCCCATTCAAACACTGCAGGCCTATGGAGTCACTGTTGACGTCGTCTGTCCCGGCAAGAAAGCCGGTGACTACTGCCGCACCGCCATTCATCAACACACTTCTGCTCATCACCAGACTCATCCGGAATCACGTGATCACAACTTTTCTCTGAATGCAACGTTTGATGACATTGAATATAGCAACTATGATGGAATAATAATTCCCGGAGGACGATCTCCTGAGTATCTTGCTATGGACGCATCGGTTTTAGAATTGGTCAACAAGTTTGCCACGTCCAGGAAGATAATTGCTGCTATGGGCCGTGGGGTATTGATCTTAGCAGCTCCAGGCTTGGTTAAGGGGCGCAACTGCACAGGGTTCCCACCTATGAGACCTGTACTCCTTGCTGGGGGTGCTCAGTGGGTGGAACCTGATACCATGGGGACGTGTATCGCCGATGGTAATATAATTACTGGGGTTACATATGAAGGTAATGCTGAGTTCATCAGGCTTTTTGTCAAGGCATTGGGAGGACACATAATTAGTTCAGAGAGAAGGATCCTGTTTCTCTGTGGAGACTTCATGGAAGATTATGAGATAACTGTGCCTTTTCAGTCACTTCTAGCACTTGGATGCCATGGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0006081 GO:0006082 GO:0006089 GO:0008150 GO:0008152 GO:0009056 GO:0009058 GO:0009438 GO:0009987 GO:0016053 GO:0016829 GO:0016835 GO:0016836 GO:0019172 GO:0019249 GO:0019752 GO:0032787 GO:0042180 GO:0042182 GO:0043436 GO:0044237 GO:0044248 GO:0044249 GO:0044281 GO:0044282 GO:0044283 GO:0046185 GO:0046394 GO:0051596 GO:0061727 GO:0071704 GO:0072330 GO:1901575 GO:1901576 GO:1901615 GO:1901617

KEGG Pathways

Metabolic & Signaling

ko00620 ko01120 map00620 map01120

Pfam Domains

Protein Families

DJ-1_PfpI

Protein Analysis

232

Amino Acids

25.33

Weight (kDa)

5.68

Isoelectric Point (pI)

44.69

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DJ-1_PfpI	PF01965	8 - 192	2.5e-37	DJ-1/PfpI family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0020364)

Species	Orthologous Gene IDs
malus_domestica	MD09G1281700.v1.1
rosa_chinensis	RchiOBHm_Chr3g0487841
rosa_roxburghii	Rroxscaffold_3G00252290 Rroxscaffold_6G00394410
rosa_samantha	Rh3BG322100 Rh3CG320400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	117
AccBSI	CCGCTC	1 cut(s)	9
AccII	CGCG	1 cut(s)	27
AccIII	TCCGGA	1 cut(s)	196
AciI	CCGC	4 cut(s)	9, 42, 151, 156
AclI	AACGTT	1 cut(s)	233
AclWI	GGATC	2 cut(s)	607, 620
AcvI	CACGTG	1 cut(s)	206
AcyI	GRCGYC	1 cut(s)	114
AfaI	GTAC	1 cut(s)	453
AfiI	CCNNNNNNNGG	2 cut(s)	351, 463
AflIII	ACRYGT	1 cut(s)	500
AgsI	TTSAA	2 cut(s)	83, 248
AjiI	CACGTC	2 cut(s)	348, 501
AjnI	CCWGG	2 cut(s)	350, 400
AluBI	AGCT	1 cut(s)	398
AluI	AGCT	1 cut(s)	398
Alw21I	GWGCWC	1 cut(s)	472
Alw26I	GTCTC	2 cut(s)	439, 624
AlwI	GGATC	2 cut(s)	607, 620
Aor13HI	TCCGGA	1 cut(s)	196
AoxI	GGCC	3 cut(s)	66, 93, 373
ApeKI	GCWGC	2 cut(s)	365, 395
AspLEI	GCGC	1 cut(s)	420
AspS9I	GGNCC	2 cut(s)	73, 373
AsuC2I	CCSGG	2 cut(s)	126, 279
AsuHPI	GGTGA	3 cut(s)	29, 152, 176
AvaII	GGWCC	1 cut(s)	73
BamHI	GGATCC	1 cut(s)	612
BauI	CACGAG	1 cut(s)	62
BbrPI	CACGTG	1 cut(s)	206
BbsI	GAAGAC	1 cut(s)	63
Bbv12I	GWGCWC	1 cut(s)	472
BbvI	GCAGC	2 cut(s)	352, 407
BccI	CCATC	2 cut(s)	257, 506
BceAI	ACGGC	1 cut(s)	360
BciT130I	CCWGG	2 cut(s)	352, 402
BclI	TGATCA	1 cut(s)	208
BcnI	CCSGG	2 cut(s)	126, 279
BcoDI	GTCTC	2 cut(s)	439, 624
BfaI	CTAG	1 cut(s)	677
BfmI	CTRYAG	1 cut(s)	89
BisI	GCNGC	3 cut(s)	151, 366, 396
BlsI	GCNGC	3 cut(s)	152, 367, 397
Bme1390I	CCNGG	4 cut(s)	126, 279, 352, 402
Bme18I	GGWCC	1 cut(s)	73
BmgBI	CACGTC	2 cut(s)	348, 501
BmgT120I	GGNCC	2 cut(s)	73, 373
BmiI	GGNNCC	4 cut(s)	75, 434, 483, 614
BmrFI	CCNGG	4 cut(s)	126, 279, 352, 402
BmrI	ACTGGG	1 cut(s)	537
BmsI	GCATC	2 cut(s)	323, 677
BmuI	ACTGGG	1 cut(s)	537
BpiI	GAAGAC	1 cut(s)	63
BpmI	CTGGAG	1 cut(s)	384
BpuMI	CCSGG	2 cut(s)	126, 279
BsaAI	YACGTR	1 cut(s)	206
BsaHI	GRCGYC	1 cut(s)	114
BsaI	GGTCTC	1 cut(s)	439
BsaJI	CCNNGG	4 cut(s)	69, 376, 492, 691
BsaWI	WCCGGW	1 cut(s)	196
BsaXI	ACNNNNNCTCC	4 cut(s)	93, 123, 438, 468
Bsc4I	CCNNNNNNNGG	2 cut(s)	351, 463
Bse118I	RCCGGY	1 cut(s)	137
Bse1I	ACTGG	1 cut(s)	532
BseAI	TCCGGA	1 cut(s)	196
BseBI	CCWGG	2 cut(s)	352, 402
BseDI	CCNNGG	4 cut(s)	69, 376, 492, 691
BseGI	GGATG	2 cut(s)	193, 692
BseLI	CCNNNNNNNGG	2 cut(s)	351, 463
BseMII	CTCAG	3 cut(s)	285, 485, 543
BseNI	ACTGG	1 cut(s)	532
BseXI	GCAGC	2 cut(s)	352, 407
BseYI	CCCAGC	1 cut(s)	461
BsgI	GTGCAG	1 cut(s)	409
Bsh1236I	CGCG	1 cut(s)	27
BshFI	GGCC	3 cut(s)	68, 95, 375
BsiHKAI	GWGCWC	1 cut(s)	472
BsiSI	CCGG	4 cut(s)	126, 138, 197, 279
BslFI	GGGAC	4 cut(s)	59, 59, 108, 511
BslI	CCNNNNNNNGG	2 cut(s)	351, 463
BsmAI	GTCTC	2 cut(s)	439, 624
BsmFI	GGGAC	4 cut(s)	59, 59, 108, 511
BsmI	GAATGC	1 cut(s)	232
BsnI	GGCC	3 cut(s)	68, 95, 375
Bso31I	GGTCTC	1 cut(s)	439
Bsp1286I	GDGCHC	1 cut(s)	472
Bsp13I	TCCGGA	1 cut(s)	196
Bsp143I	GATC	4 cut(s)	208, 287, 387, 612
Bsp19I	CCATGG	3 cut(s)	69, 492, 691
BspACI	CCGC	4 cut(s)	9, 42, 151, 156
BspANI	GGCC	3 cut(s)	68, 95, 375
BspCNI	CTCAG	3 cut(s)	286, 484, 544
BspEI	TCCGGA	1 cut(s)	196
BspFNI	CGCG	1 cut(s)	27
BspLI	GGNNCC	4 cut(s)	75, 434, 483, 614
BspMAI	CTGCAG	1 cut(s)	93
BspPI	GGATC	2 cut(s)	607, 620
BspTNI	GGTCTC	1 cut(s)	439
BsrBI	CCGCTC	1 cut(s)	9
BsrFI	RCCGGY	1 cut(s)	137
BsrI	ACTGG	1 cut(s)	532
BssAI	RCCGGY	1 cut(s)	137
BssECI	CCNNGG	4 cut(s)	69, 376, 492, 691
BssMI	GATC	4 cut(s)	208, 287, 387, 612
BssNI	GRCGYC	1 cut(s)	114
BssSI	CACGAG	1 cut(s)	62
BssT1I	CCWWGG	3 cut(s)	69, 492, 691
Bst2BI	CACGAG	1 cut(s)	62
Bst2UI	CCWGG	2 cut(s)	352, 402
Bst4CI	ACNGT	2 cut(s)	109, 658
BstACI	GRCGYC	1 cut(s)	114
BstBAI	YACGTR	1 cut(s)	206
BstC8I	GCNNGC	1 cut(s)	93
BstDEI	CTNAG	4 cut(s)	294, 391, 471, 552
BstDSI	CCRYGG	4 cut(s)	69, 376, 492, 691
BstF5I	GGATG	2 cut(s)	193, 692
BstFNI	CGCG	1 cut(s)	27
BstHHI	GCGC	1 cut(s)	420
BstKTI	GATC	4 cut(s)	211, 290, 390, 615
BstMAI	GTCTC	2 cut(s)	439, 624
BstMBI	GATC	4 cut(s)	208, 287, 387, 612
BstMWI	GCNNNNNNNGC	2 cut(s)	311, 467
BstNI	CCWGG	2 cut(s)	352, 402
BstSCI	CCNGG	4 cut(s)	124, 277, 350, 400
BstSFI	CTRYAG	1 cut(s)	89
BstUI	CGCG	1 cut(s)	27
BstV1I	GCAGC	2 cut(s)	352, 407
BstV2I	GAAGAC	1 cut(s)	63
BstX2I	RGATCY	1 cut(s)	612
BstYI	RGATCY	1 cut(s)	612
BsuRI	GGCC	3 cut(s)	68, 95, 375
BtgI	CCRYGG	4 cut(s)	69, 376, 492, 691
BtrI	CACGTC	2 cut(s)	348, 501
BtsCI	GGATG	2 cut(s)	193, 692
BtsI	GCAGTG	1 cut(s)	86
BtsIMutI	CAGTG	3 cut(s)	86, 105, 479
Cac8I	GCNNGC	1 cut(s)	93
CfoI	GCGC	1 cut(s)	420
Cfr10I	RCCGGY	1 cut(s)	137
Cfr13I	GGNCC	2 cut(s)	73, 373
CseI	GACGC	1 cut(s)	320
Csp6I	GTAC	1 cut(s)	452
CviAII	CATG	5 cut(s)	52, 70, 493, 637, 692
CviJI	RGCY	7 cut(s)	68, 95, 137, 375, 398, 405, 565
CviKI_1	RGCY	7 cut(s)	68, 95, 137, 375, 398, 405, 565
CviQI	GTAC	1 cut(s)	452
DdeI	CTNAG	4 cut(s)	294, 391, 471, 552
DpnI	GATC	4 cut(s)	210, 289, 389, 614
DpnII	GATC	4 cut(s)	208, 287, 387, 612
Eco130I	CCWWGG	3 cut(s)	69, 492, 691
Eco147I	AGGCCT	1 cut(s)	95
Eco31I	GGTCTC	1 cut(s)	439
Eco47I	GGWCC	1 cut(s)	73
Eco72I	CACGTG	1 cut(s)	206
EcoRII	CCWGG	2 cut(s)	350, 400
EcoT14I	CCWWGG	3 cut(s)	69, 492, 691
ErhI	CCWWGG	3 cut(s)	69, 492, 691
FaeI	CATG	5 cut(s)	55, 73, 496, 640, 695
FaqI	GGGAC	4 cut(s)	59, 59, 108, 511
FatI	CATG	5 cut(s)	51, 69, 492, 636, 691
FauI	CCCGC	2 cut(s)	2, 35
FauNDI	CATATG	1 cut(s)	538
FbaI	TGATCA	1 cut(s)	208
Fnu4HI	GCNGC	3 cut(s)	151, 366, 396
FokI	GGATG	1 cut(s)	180
Fsp4HI	GCNGC	3 cut(s)	151, 366, 396
FspBI	CTAG	1 cut(s)	677
GlaI	GCGC	1 cut(s)	419
GluI	GCNGC	3 cut(s)	151, 366, 396
GsaI	CCCAGC	1 cut(s)	465
GsuI	CTGGAG	1 cut(s)	384
HaeIII	GGCC	3 cut(s)	68, 95, 375
HapII	CCGG	4 cut(s)	126, 138, 197, 279
HgaI	GACGC	1 cut(s)	320
HhaI	GCGC	1 cut(s)	420
Hin1I	GRCGYC	1 cut(s)	114
Hin1II	CATG	5 cut(s)	55, 73, 496, 640, 695
Hin6I	GCGC	1 cut(s)	418
HinP1I	GCGC	1 cut(s)	418
HincII	GTYRAC	2 cut(s)	112, 334
HindII	GTYRAC	2 cut(s)	112, 334
HinfI	GANTC	3 cut(s)	102, 190, 200
HpaII	CCGG	4 cut(s)	126, 138, 197, 279
HphI	GGTGA	3 cut(s)	29, 152, 176
Hpy166II	GTNNAC	3 cut(s)	20, 112, 334
Hpy188I	TCNGA	2 cut(s)	225, 604
Hpy188III	TCNNGA	2 cut(s)	197, 293
Hpy8I	GTNNAC	3 cut(s)	20, 112, 334
Hpy99I	CGWCG	2 cut(s)	27, 119
HpyAV	CCTTC	2 cut(s)	536, 603
HpyCH4III	ACNGT	2 cut(s)	109, 658
HpyCH4IV	ACGT	6 cut(s)	22, 114, 205, 233, 347, 500
HpyCH4V	TGCA	3 cut(s)	91, 230, 426
HpyF10VI	GCNNNNNNNGC	2 cut(s)	311, 467
HpyF3I	CTNAG	4 cut(s)	294, 391, 471, 552
HpySE526I	ACGT	6 cut(s)	22, 114, 205, 233, 347, 500
Hsp92I	GRCGYC	1 cut(s)	114
Hsp92II	CATG	5 cut(s)	55, 73, 496, 640, 695
HspAI	GCGC	1 cut(s)	418
Kpn2I	TCCGGA	1 cut(s)	196
Ksp22I	TGATCA	1 cut(s)	208
Kzo9I	GATC	4 cut(s)	208, 287, 387, 612
LmnI	GCTCC	2 cut(s)	6, 403
Lsp1109I	GCAGC	2 cut(s)	352, 407
LweI	GCATC	2 cut(s)	323, 677
MaeI	CTAG	1 cut(s)	677
MaeII	ACGT	6 cut(s)	22, 114, 205, 233, 347, 500
MaeIII	GTNAC	5 cut(s)	33, 103, 140, 532, 669
MalI	GATC	4 cut(s)	210, 289, 389, 614
MbiI	CCGCTC	1 cut(s)	9
MboI	GATC	4 cut(s)	208, 287, 387, 612
MboII	GAAGA	3 cut(s)	68, 367, 653
MflI	RGATCY	1 cut(s)	612
MhlI	GDGCHC	1 cut(s)	472
MluCI	AATT	5 cut(s)	273, 326, 360, 522, 594
MlyI	GAGTC	2 cut(s)	111, 184
MnlI	CCTC	3 cut(s)	58, 275, 578
MroI	TCCGGA	1 cut(s)	196
MseI	TTAA	1 cut(s)	411
MslI	CAYNNNNRTG	1 cut(s)	685
MspI	CCGG	4 cut(s)	126, 138, 197, 279
MspR9I	CCNGG	4 cut(s)	126, 279, 352, 402
Mva1269I	GAATGC	1 cut(s)	232
MvaI	CCWGG	2 cut(s)	352, 402
MvnI	CGCG	1 cut(s)	27
MwoI	GCNNNNNNNGC	2 cut(s)	311, 467
NciI	CCSGG	2 cut(s)	126, 279
NcoI	CCATGG	3 cut(s)	69, 492, 691
NdeI	CATATG	1 cut(s)	538
NdeII	GATC	4 cut(s)	208, 287, 387, 612
NlaIII	CATG	5 cut(s)	55, 73, 496, 640, 695
NlaIV	GGNNCC	4 cut(s)	75, 434, 483, 614
NmuCI	GTSAC	3 cut(s)	103, 140, 669
PceI	AGGCCT	1 cut(s)	95
PctI	GAATGC	1 cut(s)	232
PfeI	GAWTC	1 cut(s)	200
PflFI	GACNNNGTC	1 cut(s)	116
PfoI	TCCNGGA	2 cut(s)	277, 350
PkrI	GCNGC	3 cut(s)	152, 367, 397
PleI	GAGTC	2 cut(s)	110, 184
PmaCI	CACGTG	1 cut(s)	206
PmlI	CACGTG	1 cut(s)	206
PpsI	GAGTC	2 cut(s)	110, 184
Ppu21I	YACGTR	1 cut(s)	206
Psp1406I	AACGTT	1 cut(s)	233
Psp6I	CCWGG	2 cut(s)	350, 400
PspCI	CACGTG	1 cut(s)	206
PspFI	CCCAGC	1 cut(s)	461
PspGI	CCWGG	2 cut(s)	350, 400
PspN4I	GGNNCC	4 cut(s)	75, 434, 483, 614
PspPI	GGNCC	2 cut(s)	73, 373
PstI	CTGCAG	1 cut(s)	93
PsuI	RGATCY	1 cut(s)	612
PsyI	GACNNNGTC	1 cut(s)	116
RsaI	GTAC	1 cut(s)	453
RsaNI	GTAC	1 cut(s)	452
RseI	CAYNNNNRTG	1 cut(s)	685
SaqAI	TTAA	1 cut(s)	411
SatI	GCNGC	3 cut(s)	151, 366, 396
Sau3AI	GATC	4 cut(s)	208, 287, 387, 612
Sau96I	GGNCC	2 cut(s)	73, 373
SchI	GAGTC	2 cut(s)	111, 184
ScrFI	CCNGG	4 cut(s)	126, 279, 352, 402
SduI	GDGCHC	1 cut(s)	472
SfaNI	GCATC	2 cut(s)	323, 677
SfcI	CTRYAG	1 cut(s)	89
SinI	GGWCC	1 cut(s)	73
SmiMI	CAYNNNNRTG	1 cut(s)	685
Sse9I	AATT	5 cut(s)	273, 326, 360, 522, 594
SseBI	AGGCCT	1 cut(s)	95
SsiI	CCGC	4 cut(s)	9, 42, 151, 156
SspMI	CTAG	1 cut(s)	677
StuI	AGGCCT	1 cut(s)	95
StyD4I	CCNGG	4 cut(s)	124, 277, 350, 400
StyI	CCWWGG	3 cut(s)	69, 492, 691
TaaI	ACNGT	2 cut(s)	109, 658
TaiI	ACGT	6 cut(s)	25, 117, 208, 236, 350, 503
TasI	AATT	5 cut(s)	273, 326, 360, 522, 594
TatI	WGTACW	1 cut(s)	451
TauI	GCSGC	1 cut(s)	153
TfiI	GAWTC	1 cut(s)	200
Tru1I	TTAA	1 cut(s)	411
Tru9I	TTAA	1 cut(s)	411
TscAI	CASTG	3 cut(s)	93, 112, 479
TseFI	GTSAC	3 cut(s)	103, 140, 669
TseI	GCWGC	2 cut(s)	365, 395
Tsp45I	GTSAC	3 cut(s)	103, 140, 669
TspDTI	ATGAA	4 cut(s)	152, 547, 555, 625
TspRI	CASTG	3 cut(s)	93, 112, 479
Tth111I	GACNNNGTC	1 cut(s)	116
VpaK11BI	GGWCC	1 cut(s)	73
XspI	CTAG	1 cut(s)	677
ZraI	GACGTC	1 cut(s)	115

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.