Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0020364

Physical Location & Seq

Genomic Coordinates Reverse (-)

35162573 .. 35163123

Gene Structure 551 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ45226

Sequence Viewer

CDS Protein Promoter (2k)

Length: 345 bp

ATGTGGAGCGGGAAAGGTGAACGTCGCGTTCTGTTACTATGCGGGGACTACATGGAAGACCACGAGGCCATGGTCCCCTTTCAAACACTGCAGGCCTATGGAGTCACTATTGACGCCGTCTGTCCCGGCAAGAAAGTTGGTGACTACTGCCGCACCGCTATTCATCAACACACTTCTGCCCACCAGACTCATCCGGAATCACGTGGTCAGAACTTTGCTCTGAATGCAACGTTTGATGACATTGAATATAGCAACTATGATGGAATAATAATCCCCGGAGGACGATCTCCTGAGTATCTTGCTATGGATGCATTGGTTTTACAATTGGTCAACAAGTTTGCCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0006081 GO:0006082 GO:0006089 GO:0008150 GO:0008152 GO:0009056 GO:0009058 GO:0009438 GO:0009987 GO:0016053 GO:0016829 GO:0016835 GO:0016836 GO:0019172 GO:0019249 GO:0019752 GO:0032787 GO:0042180 GO:0042182 GO:0043436 GO:0044237 GO:0044248 GO:0044249 GO:0044281 GO:0044282 GO:0044283 GO:0046185 GO:0046394 GO:0051596 GO:0061727 GO:0071704 GO:0072330 GO:1901575 GO:1901576 GO:1901615 GO:1901617

KEGG Pathways

Metabolic & Signaling

ko00620 ko01120 map00620 map01120

Pfam Domains

Protein Families

DJ-1_PfpI

Protein Analysis

114

Amino Acids

12.71

Weight (kDa)

5.37

Isoelectric Point (pI)

47.15

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DJ-1_PfpI	PF01965	8 - 113	4.1e-18	DJ-1/PfpI family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0020364)

Species	Orthologous Gene IDs
malus_domestica	MD09G1281700.v1.1
rosa_chinensis	RchiOBHm_Chr3g0487841
rosa_roxburghii	Rroxscaffold_3G00252290 Rroxscaffold_6G00394410
rosa_samantha	Rh3BG322100 Rh3CG320400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	9
AccII	CGCG	1 cut(s)	27
AccIII	TCCGGA	1 cut(s)	193
AciI	CCGC	4 cut(s)	9, 42, 151, 156
AclI	AACGTT	1 cut(s)	230
AcvI	CACGTG	1 cut(s)	203
AcyI	GRCGYC	1 cut(s)	114
AgsI	TTSAA	2 cut(s)	83, 245
Aor13HI	TCCGGA	1 cut(s)	193
AoxI	GGCC	2 cut(s)	66, 93
AspS9I	GGNCC	1 cut(s)	73
AsuC2I	CCSGG	2 cut(s)	126, 276
AsuHPI	GGTGA	2 cut(s)	29, 152
AvaII	GGWCC	1 cut(s)	73
BauI	CACGAG	1 cut(s)	62
BbrPI	CACGTG	1 cut(s)	203
BbsI	GAAGAC	1 cut(s)	63
BccI	CCATC	1 cut(s)	254
BceAI	ACGGC	1 cut(s)	101
BcnI	CCSGG	2 cut(s)	126, 276
BfaI	CTAG	1 cut(s)	343
BfmI	CTRYAG	1 cut(s)	89
BisI	GCNGC	1 cut(s)	151
BlsI	GCNGC	1 cut(s)	152
Bme1390I	CCNGG	2 cut(s)	126, 276
Bme18I	GGWCC	1 cut(s)	73
BmgT120I	GGNCC	1 cut(s)	73
BmiI	GGNNCC	1 cut(s)	75
BmrFI	CCNGG	2 cut(s)	126, 276
BmsI	GCATC	1 cut(s)	298
BpiI	GAAGAC	1 cut(s)	63
BpuMI	CCSGG	2 cut(s)	126, 276
BsaAI	YACGTR	1 cut(s)	203
BsaHI	GRCGYC	1 cut(s)	114
BsaJI	CCNNGG	2 cut(s)	69, 274
BsaWI	WCCGGW	1 cut(s)	193
BseAI	TCCGGA	1 cut(s)	193
BseDI	CCNNGG	2 cut(s)	69, 274
BseGI	GGATG	2 cut(s)	190, 313
BseMII	CTCAG	1 cut(s)	282
Bsh1236I	CGCG	1 cut(s)	27
BshFI	GGCC	2 cut(s)	68, 95
BsiSI	CCGG	3 cut(s)	126, 194, 276
BslFI	GGGAC	3 cut(s)	59, 59, 108
BsmFI	GGGAC	3 cut(s)	59, 59, 108
BsmI	GAATGC	1 cut(s)	229
BsnI	GGCC	2 cut(s)	68, 95
Bsp13I	TCCGGA	1 cut(s)	193
Bsp143I	GATC	1 cut(s)	284
Bsp19I	CCATGG	1 cut(s)	69
BspACI	CCGC	4 cut(s)	9, 42, 151, 156
BspANI	GGCC	2 cut(s)	68, 95
BspCNI	CTCAG	1 cut(s)	283
BspEI	TCCGGA	1 cut(s)	193
BspFNI	CGCG	1 cut(s)	27
BspLI	GGNNCC	1 cut(s)	75
BspMAI	CTGCAG	1 cut(s)	93
BsrBI	CCGCTC	1 cut(s)	9
BssECI	CCNNGG	2 cut(s)	69, 274
BssMI	GATC	1 cut(s)	284
BssNI	GRCGYC	1 cut(s)	114
BssSI	CACGAG	1 cut(s)	62
BssT1I	CCWWGG	1 cut(s)	69
Bst2BI	CACGAG	1 cut(s)	62
BstACI	GRCGYC	1 cut(s)	114
BstBAI	YACGTR	1 cut(s)	203
BstC8I	GCNNGC	1 cut(s)	93
BstDEI	CTNAG	1 cut(s)	291
BstDSI	CCRYGG	1 cut(s)	69
BstF5I	GGATG	2 cut(s)	190, 313
BstFNI	CGCG	1 cut(s)	27
BstKTI	GATC	1 cut(s)	287
BstMBI	GATC	1 cut(s)	284
BstMWI	GCNNNNNNNGC	2 cut(s)	224, 308
BstSCI	CCNGG	2 cut(s)	124, 274
BstSFI	CTRYAG	1 cut(s)	89
BstUI	CGCG	1 cut(s)	27
BstV2I	GAAGAC	1 cut(s)	63
BsuRI	GGCC	2 cut(s)	68, 95
BtgI	CCRYGG	1 cut(s)	69
BtsCI	GGATG	2 cut(s)	190, 313
BtsI	GCAGTG	1 cut(s)	86
BtsIMutI	CAGTG	1 cut(s)	86
Cac8I	GCNNGC	1 cut(s)	93
Cfr13I	GGNCC	1 cut(s)	73
CseI	GACGC	1 cut(s)	122
CviAII	CATG	2 cut(s)	52, 70
CviJI	RGCY	2 cut(s)	68, 95
CviKI_1	RGCY	2 cut(s)	68, 95
DdeI	CTNAG	1 cut(s)	291
DpnI	GATC	1 cut(s)	286
DpnII	GATC	1 cut(s)	284
Eco130I	CCWWGG	1 cut(s)	69
Eco147I	AGGCCT	1 cut(s)	95
Eco47I	GGWCC	1 cut(s)	73
Eco72I	CACGTG	1 cut(s)	203
EcoT14I	CCWWGG	1 cut(s)	69
EcoT22I	ATGCAT	1 cut(s)	313
ErhI	CCWWGG	1 cut(s)	69
FaeI	CATG	2 cut(s)	55, 73
FaiI	YATR	7 cut(s)	40, 53, 71, 99, 249, 258, 305
FaqI	GGGAC	3 cut(s)	59, 59, 108
FatI	CATG	2 cut(s)	51, 69
FauI	CCCGC	2 cut(s)	2, 35
Fnu4HI	GCNGC	1 cut(s)	151
FokI	GGATG	2 cut(s)	177, 320
Fsp4HI	GCNGC	1 cut(s)	151
FspBI	CTAG	1 cut(s)	343
GluI	GCNGC	1 cut(s)	151
HaeIII	GGCC	2 cut(s)	68, 95
HapII	CCGG	3 cut(s)	126, 194, 276
HgaI	GACGC	1 cut(s)	122
Hin1I	GRCGYC	1 cut(s)	114
Hin1II	CATG	2 cut(s)	55, 73
HincII	GTYRAC	1 cut(s)	331
HindII	GTYRAC	1 cut(s)	331
HinfI	GANTC	3 cut(s)	102, 187, 197
HpaII	CCGG	3 cut(s)	126, 194, 276
HphI	GGTGA	2 cut(s)	29, 152
Hpy166II	GTNNAC	2 cut(s)	20, 331
Hpy188I	TCNGA	2 cut(s)	210, 222
Hpy188III	TCNNGA	2 cut(s)	194, 290
Hpy8I	GTNNAC	2 cut(s)	20, 331
Hpy99I	CGWCG	1 cut(s)	27
HpyCH4IV	ACGT	3 cut(s)	22, 202, 230
HpyCH4V	TGCA	3 cut(s)	91, 227, 311
HpyF10VI	GCNNNNNNNGC	2 cut(s)	224, 308
HpyF3I	CTNAG	1 cut(s)	291
HpySE526I	ACGT	3 cut(s)	22, 202, 230
Hsp92I	GRCGYC	1 cut(s)	114
Hsp92II	CATG	2 cut(s)	55, 73
Kpn2I	TCCGGA	1 cut(s)	193
Kzo9I	GATC	1 cut(s)	284
LmnI	GCTCC	1 cut(s)	6
LpnPI	CCDG	6 cut(s)	77, 139, 197, 207, 289, 303
LweI	GCATC	1 cut(s)	298
MaeI	CTAG	1 cut(s)	343
MaeII	ACGT	3 cut(s)	22, 202, 230
MaeIII	GTNAC	3 cut(s)	33, 103, 140
MalI	GATC	1 cut(s)	286
MbiI	CCGCTC	1 cut(s)	9
MboI	GATC	1 cut(s)	284
MboII	GAAGA	1 cut(s)	68
MfeI	CAATTG	1 cut(s)	323
MluCI	AATT	1 cut(s)	323
MlyI	GAGTC	2 cut(s)	111, 181
MnlI	CCTC	2 cut(s)	58, 272
Mph1103I	ATGCAT	1 cut(s)	313
MroI	TCCGGA	1 cut(s)	193
MspI	CCGG	3 cut(s)	126, 194, 276
MspR9I	CCNGG	2 cut(s)	126, 276
MunI	CAATTG	1 cut(s)	323
Mva1269I	GAATGC	1 cut(s)	229
MvnI	CGCG	1 cut(s)	27
MwoI	GCNNNNNNNGC	2 cut(s)	224, 308
NciI	CCSGG	2 cut(s)	126, 276
NcoI	CCATGG	1 cut(s)	69
NdeII	GATC	1 cut(s)	284
NlaIII	CATG	2 cut(s)	55, 73
NlaIV	GGNNCC	1 cut(s)	75
NmuCI	GTSAC	2 cut(s)	103, 140
NsiI	ATGCAT	1 cut(s)	313
PceI	AGGCCT	1 cut(s)	95
PctI	GAATGC	1 cut(s)	229
PfeI	GAWTC	1 cut(s)	197
PflFI	GACNNNGTC	1 cut(s)	116
PkrI	GCNGC	1 cut(s)	152
PleI	GAGTC	2 cut(s)	110, 181
PmaCI	CACGTG	1 cut(s)	203
PmlI	CACGTG	1 cut(s)	203
PpsI	GAGTC	2 cut(s)	110, 181
Ppu21I	YACGTR	1 cut(s)	203
Psp1406I	AACGTT	1 cut(s)	230
PspCI	CACGTG	1 cut(s)	203
PspN4I	GGNNCC	1 cut(s)	75
PspPI	GGNCC	1 cut(s)	73
PstI	CTGCAG	1 cut(s)	93
PsyI	GACNNNGTC	1 cut(s)	116
SatI	GCNGC	1 cut(s)	151
Sau3AI	GATC	1 cut(s)	284
Sau96I	GGNCC	1 cut(s)	73
SchI	GAGTC	2 cut(s)	111, 181
ScrFI	CCNGG	2 cut(s)	126, 276
SetI	ASST	4 cut(s)	19, 25, 205, 233
SfaNI	GCATC	1 cut(s)	298
SfcI	CTRYAG	1 cut(s)	89
SinI	GGWCC	1 cut(s)	73
Sse9I	AATT	1 cut(s)	323
SseBI	AGGCCT	1 cut(s)	95
SsiI	CCGC	4 cut(s)	9, 42, 151, 156
SspMI	CTAG	1 cut(s)	343
StuI	AGGCCT	1 cut(s)	95
StyD4I	CCNGG	2 cut(s)	124, 274
StyI	CCWWGG	1 cut(s)	69
TaiI	ACGT	3 cut(s)	25, 205, 233
TasI	AATT	1 cut(s)	323
TauI	GCSGC	1 cut(s)	153
TfiI	GAWTC	1 cut(s)	197
TscAI	CASTG	1 cut(s)	93
TseFI	GTSAC	2 cut(s)	103, 140
Tsp45I	GTSAC	2 cut(s)	103, 140
TspDTI	ATGAA	1 cut(s)	152
TspRI	CASTG	1 cut(s)	93
Tth111I	GACNNNGTC	1 cut(s)	116
VpaK11BI	GGWCC	1 cut(s)	73
XspI	CTAG	1 cut(s)	343
Zsp2I	ATGCAT	1 cut(s)	313

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.