Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr10

Orthogroup ID

OG0019263

Physical Location & Seq

Genomic Coordinates Reverse (-)

11214786 .. 11215382

Gene Structure 597 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD10G1079000.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 597 bp

ATGCTTGCAACTGTGGCTGTTGGATTTGTCAAGACCATTGCAATCTTGGTGGCAACATTTCAAGTTGATCCATTCGGACGTCGTATTTTGCTTTTGAGCAGGGTGGGTGGAATGGTAGTTTCTTTTACGCTGCTTGGTGTGGGTCTTACGGTCGTTGATCAATCCCACAGCAAGGTCCTGTGGGCCGTCGGGTTGTGCATCGCCATGGTACTGTTCATCGTTGCTTTTTTCTCCATCGGGTTGGGACCCATCACGTGGGTTTACAGCTCTGAGATCTTTCTGTTACAGTTGCGCACACAAGGGTGCAATATGGGGGTGGCTGTGAACAGGGTGACGAGCGGGGTCATCTCAAAGACTTTTATTTCATTGTATAAGGCCATCACGATTGGTGGGGCCTTCTTTCTTTACGCGGGAATCGCTGCGCTTAGTTGGGTCTTCTTTTATACGTTGTATCCAGAAATGCAGGGTCAATCCCTTGAAGATATGGAGGTCTTGTTTGGTAAATACCACAAGTGGAGAGAAGCCAATGCCATGCTTAACAAGACTAAGCAAGCTGATCATGGTATTGGTGACGACAACAAGGTTCAAATCCATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005351 GO:0005354 GO:0005355 GO:0005365 GO:0005402 GO:0005575 GO:0005623 GO:0005886 GO:0006810 GO:0006811 GO:0006812 GO:0007275 GO:0008150 GO:0008324 GO:0008643 GO:0008645 GO:0009653 GO:0009791 GO:0010015 GO:0010101 GO:0010102 GO:0010311 GO:0015075 GO:0015077 GO:0015078 GO:0015144 GO:0015145 GO:0015146 GO:0015148 GO:0015149 GO:0015166 GO:0015168 GO:0015291 GO:0015293 GO:0015294 GO:0015295 GO:0015318 GO:0015575 GO:0015576 GO:0015591 GO:0015672 GO:0015749 GO:0015750 GO:0015752 GO:0015753 GO:0015757 GO:0015791 GO:0015793 GO:0015795 GO:0015797 GO:0015798 GO:0015850 GO:0016020 GO:0022622 GO:0022804 GO:0022857 GO:0022890 GO:0032501 GO:0032502 GO:0034219 GO:0034220 GO:0042995 GO:0044464 GO:0046323 GO:0048364 GO:0048527 GO:0048528 GO:0048646 GO:0048731 GO:0048856 GO:0051119 GO:0051179 GO:0051234 GO:0055085 GO:0071702 GO:0071944 GO:0090406 GO:0090696 GO:0090697 GO:0090698 GO:0098655 GO:0098660 GO:0098662 GO:0099402 GO:0120025 GO:1901618 GO:1902600 GO:1904659 GO:1905392 GO:1905393

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Sugar_tr

Protein Analysis

199

Amino Acids

21.74

Weight (kDa)

9.14

Isoelectric Point (pI)

29.65

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Sugar_tr	PF00083	1 - 166	3.2e-29	Sugar (and other) transporter

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0019263)

Species	Orthologous Gene IDs
malus_domestica	MD10G1079000.v1.1 MD10G1079300.v1.1 MD10G1106200.v1.1
pyrus_communis	pycom04g19060 pycom10g06230
rosa_samantha	Rh6AG125200 Rh6BG121200 Rh6CG119500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	82
Acc16I	TGCGCA	1 cut(s)	293
AccB7I	CCANNNNNTGG	1 cut(s)	255
AccBSI	CCGCTC	1 cut(s)	339
AccII	CGCG	1 cut(s)	410
AciI	CCGC	2 cut(s)	339, 410
AclWI	GGATC	1 cut(s)	62
AcvI	CACGTG	1 cut(s)	255
AcyI	GRCGYC	1 cut(s)	79
AfaI	GTAC	1 cut(s)	210
AfiI	CCNNNNNNNGG	2 cut(s)	172, 255
AgsI	TTSAA	3 cut(s)	62, 479, 587
AleI	CACNNNNGTG	1 cut(s)	301
AluBI	AGCT	2 cut(s)	267, 554
AluI	AGCT	2 cut(s)	267, 554
AlwI	GGATC	1 cut(s)	62
AoxI	GGCC	3 cut(s)	183, 375, 393
ApeKI	GCWGC	2 cut(s)	130, 419
AspLEI	GCGC	2 cut(s)	294, 424
AspS9I	GGNCC	4 cut(s)	175, 183, 245, 393
AsuHPI	GGTGA	2 cut(s)	343, 581
AvaII	GGWCC	2 cut(s)	175, 245
BbrPI	CACGTG	1 cut(s)	255
BbsI	GAAGAC	1 cut(s)	427
BbvI	GCAGC	2 cut(s)	117, 406
BccI	CCATC	3 cut(s)	242, 257, 386
BceAI	ACGGC	1 cut(s)	170
BciVI	GTATCC	1 cut(s)	462
BclI	TGATCA	2 cut(s)	157, 556
BfuI	GTATCC	1 cut(s)	462
BglII	AGATCT	1 cut(s)	273
BisI	GCNGC	2 cut(s)	131, 420
BlsI	GCNGC	2 cut(s)	132, 421
Bme18I	GGWCC	2 cut(s)	175, 245
BmgT120I	GGNCC	4 cut(s)	175, 183, 245, 393
BmiI	GGNNCC	3 cut(s)	246, 247, 394
BmsI	GCATC	1 cut(s)	207
BpiI	GAAGAC	1 cut(s)	427
BsaAI	YACGTR	1 cut(s)	255
BsaHI	GRCGYC	1 cut(s)	79
BsaJI	CCNNGG	1 cut(s)	204
BsaXI	ACNNNNNCTCC	2 cut(s)	479, 509
Bsc4I	CCNNNNNNNGG	2 cut(s)	172, 255
Bse3DI	GCAATG	1 cut(s)	36
BseDI	CCNNGG	1 cut(s)	204
BseLI	CCNNNNNNNGG	2 cut(s)	172, 255
BseMI	GCAATG	1 cut(s)	36
BseMII	CTCAG	1 cut(s)	261
BseXI	GCAGC	2 cut(s)	117, 406
Bsh1236I	CGCG	1 cut(s)	410
Bsh1285I	CGRYCG	1 cut(s)	153
BshFI	GGCC	3 cut(s)	185, 377, 395
BsiEI	CGRYCG	1 cut(s)	153
BslFI	GGGAC	1 cut(s)	258
BslI	CCNNNNNNNGG	2 cut(s)	172, 255
BsmFI	GGGAC	1 cut(s)	258
BsnI	GGCC	3 cut(s)	185, 377, 395
Bsp143I	GATC	4 cut(s)	67, 157, 273, 556
Bsp19I	CCATGG	1 cut(s)	204
BspACI	CCGC	2 cut(s)	339, 410
BspANI	GGCC	3 cut(s)	185, 377, 395
BspCNI	CTCAG	1 cut(s)	262
BspFNI	CGCG	1 cut(s)	410
BspLI	GGNNCC	3 cut(s)	246, 247, 394
BspPI	GGATC	1 cut(s)	62
BsrBI	CCGCTC	1 cut(s)	339
BsrDI	GCAATG	1 cut(s)	36
BssECI	CCNNGG	1 cut(s)	204
BssMI	GATC	4 cut(s)	67, 157, 273, 556
BssNI	GRCGYC	1 cut(s)	79
BssT1I	CCWWGG	1 cut(s)	204
Bst4CI	ACNGT	4 cut(s)	13, 151, 213, 288
BstACI	GRCGYC	1 cut(s)	79
BstBAI	YACGTR	1 cut(s)	255
BstC8I	GCNNGC	2 cut(s)	6, 552
BstDEI	CTNAG	3 cut(s)	270, 425, 546
BstDSI	CCRYGG	1 cut(s)	204
BstFNI	CGCG	1 cut(s)	410
BstHHI	GCGC	2 cut(s)	294, 424
BstKTI	GATC	4 cut(s)	70, 160, 276, 559
BstMBI	GATC	4 cut(s)	67, 157, 273, 556
BstMCI	CGRYCG	1 cut(s)	153
BstMWI	GCNNNNNNNGC	2 cut(s)	14, 416
BstUI	CGCG	1 cut(s)	410
BstV1I	GCAGC	2 cut(s)	117, 406
BstV2I	GAAGAC	1 cut(s)	427
BstX2I	RGATCY	1 cut(s)	273
BstXI	CCANNNNNNTGG	1 cut(s)	241
BstYI	RGATCY	1 cut(s)	273
BsuI	GTATCC	1 cut(s)	462
BsuRI	GGCC	3 cut(s)	185, 377, 395
BtgI	CCRYGG	1 cut(s)	204
BtgZI	GCGATG	1 cut(s)	184
Cac8I	GCNNGC	2 cut(s)	6, 552
CfoI	GCGC	2 cut(s)	294, 424
Cfr13I	GGNCC	4 cut(s)	175, 183, 245, 393
Csp6I	GTAC	1 cut(s)	209
CspCI	CAANNNNNGTGG	2 cut(s)	30, 65
CviAII	CATG	3 cut(s)	205, 532, 560
CviJI	RGCY	8 cut(s)	17, 185, 267, 320, 377, 395, 524, 554
CviKI_1	RGCY	8 cut(s)	17, 185, 267, 320, 377, 395, 524, 554
CviQI	GTAC	1 cut(s)	209
DdeI	CTNAG	3 cut(s)	270, 425, 546
DpnI	GATC	4 cut(s)	69, 159, 275, 558
DpnII	GATC	4 cut(s)	67, 157, 273, 556
Eco130I	CCWWGG	1 cut(s)	204
Eco47I	GGWCC	2 cut(s)	175, 245
Eco72I	CACGTG	1 cut(s)	255
EcoO109I	RGGNCCY	3 cut(s)	175, 245, 393
EcoT14I	CCWWGG	1 cut(s)	204
ErhI	CCWWGG	1 cut(s)	204
FaeI	CATG	3 cut(s)	208, 535, 563
FaiI	YATR	7 cut(s)	206, 311, 372, 444, 485, 533, 561
FaqI	GGGAC	1 cut(s)	258
FatI	CATG	3 cut(s)	204, 531, 559
FauI	CCCGC	2 cut(s)	332, 403
FbaI	TGATCA	2 cut(s)	157, 556
Fnu4HI	GCNGC	2 cut(s)	131, 420
Fsp4HI	GCNGC	2 cut(s)	131, 420
FspI	TGCGCA	1 cut(s)	293
GlaI	GCGC	2 cut(s)	293, 423
GluI	GCNGC	2 cut(s)	131, 420
HaeIII	GGCC	3 cut(s)	185, 377, 395
HhaI	GCGC	2 cut(s)	294, 424
Hin1I	GRCGYC	1 cut(s)	79
Hin1II	CATG	3 cut(s)	208, 535, 563
Hin6I	GCGC	2 cut(s)	292, 422
HinP1I	GCGC	2 cut(s)	292, 422
HinfI	GANTC	1 cut(s)	414
HphI	GGTGA	2 cut(s)	343, 581
Hpy166II	GTNNAC	2 cut(s)	262, 325
Hpy188I	TCNGA	2 cut(s)	77, 271
Hpy188III	TCNNGA	3 cut(s)	31, 382, 455
Hpy8I	GTNNAC	2 cut(s)	262, 325
Hpy99I	CGWCG	2 cut(s)	84, 191
HpyAV	CCTTC	1 cut(s)	406
HpyCH4III	ACNGT	4 cut(s)	13, 151, 213, 288
HpyCH4IV	ACGT	3 cut(s)	79, 254, 446
HpyCH4V	TGCA	5 cut(s)	8, 41, 198, 306, 463
HpyF10VI	GCNNNNNNNGC	2 cut(s)	14, 416
HpyF3I	CTNAG	3 cut(s)	270, 425, 546
HpySE526I	ACGT	3 cut(s)	79, 254, 446
Hsp92I	GRCGYC	1 cut(s)	79
Hsp92II	CATG	3 cut(s)	208, 535, 563
HspAI	GCGC	2 cut(s)	292, 422
KflI	GGGWCCC	1 cut(s)	245
Ksp22I	TGATCA	2 cut(s)	157, 556
Kzo9I	GATC	4 cut(s)	67, 157, 273, 556
LpnPI	CCDG	5 cut(s)	85, 191, 313, 449, 468
Lsp1109I	GCAGC	2 cut(s)	117, 406
LweI	GCATC	1 cut(s)	207
MaeII	ACGT	3 cut(s)	79, 254, 446
MaeIII	GTNAC	3 cut(s)	282, 331, 569
MalI	GATC	4 cut(s)	69, 159, 275, 558
MbiI	CCGCTC	1 cut(s)	339
MboI	GATC	4 cut(s)	67, 157, 273, 556
MboII	GAAGA	2 cut(s)	427, 491
MflI	RGATCY	1 cut(s)	273
MnlI	CCTC	1 cut(s)	481
MseI	TTAA	1 cut(s)	537
MslI	CAYNNNNRTG	2 cut(s)	203, 301
MvnI	CGCG	1 cut(s)	410
MwoI	GCNNNNNNNGC	2 cut(s)	14, 416
NcoI	CCATGG	1 cut(s)	204
NdeII	GATC	4 cut(s)	67, 157, 273, 556
NlaIII	CATG	3 cut(s)	208, 535, 563
NlaIV	GGNNCC	3 cut(s)	246, 247, 394
NmuCI	GTSAC	2 cut(s)	331, 569
NsbI	TGCGCA	1 cut(s)	293
OliI	CACNNNNGTG	1 cut(s)	301
PfeI	GAWTC	1 cut(s)	414
PflMI	CCANNNNNTGG	1 cut(s)	255
PkrI	GCNGC	2 cut(s)	132, 421
PmaCI	CACGTG	1 cut(s)	255
PmlI	CACGTG	1 cut(s)	255
Ppu21I	YACGTR	1 cut(s)	255
PpuMI	RGGWCCY	2 cut(s)	175, 245
Psp5II	RGGWCCY	2 cut(s)	175, 245
PspCI	CACGTG	1 cut(s)	255
PspN4I	GGNNCC	3 cut(s)	246, 247, 394
PspPI	GGNCC	4 cut(s)	175, 183, 245, 393
PspPPI	RGGWCCY	2 cut(s)	175, 245
PsuI	RGATCY	1 cut(s)	273
RsaI	GTAC	1 cut(s)	210
RsaNI	GTAC	1 cut(s)	209
RseI	CAYNNNNRTG	2 cut(s)	203, 301
SaqAI	TTAA	1 cut(s)	537
SatI	GCNGC	2 cut(s)	131, 420
Sau3AI	GATC	4 cut(s)	67, 157, 273, 556
Sau96I	GGNCC	4 cut(s)	175, 183, 245, 393
SetI	ASST	8 cut(s)	82, 177, 257, 269, 449, 492, 556, 585
SfaNI	GCATC	1 cut(s)	207
SinI	GGWCC	2 cut(s)	175, 245
SmiMI	CAYNNNNRTG	2 cut(s)	203, 301
SsiI	CCGC	2 cut(s)	339, 410
StyI	CCWWGG	1 cut(s)	204
TaaI	ACNGT	4 cut(s)	13, 151, 213, 288
TaiI	ACGT	3 cut(s)	82, 257, 449
TfiI	GAWTC	1 cut(s)	414
Tru1I	TTAA	1 cut(s)	537
Tru9I	TTAA	1 cut(s)	537
TseFI	GTSAC	2 cut(s)	331, 569
TseI	GCWGC	2 cut(s)	130, 419
Tsp45I	GTSAC	2 cut(s)	331, 569
TspDTI	ATGAA	2 cut(s)	205, 354
Van91I	CCANNNNNTGG	1 cut(s)	255
VpaK11BI	GGWCC	2 cut(s)	175, 245
XcmI	CCANNNNNNNNNTGG	1 cut(s)	43
ZraI	GACGTC	1 cut(s)	80

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.