Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6A

Orthogroup ID

OG0019263

Physical Location & Seq

Genomic Coordinates Forward (+)

18729372 .. 18729883

Gene Structure 512 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6AG125200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 198 bp

ATGGAAGTCCTTTTTGGGAAGTTCCACAAGTGGAAACAGGCCAATGCTCCGGTCAAGAATAAGCAGGTGGATCATAATAGTAATGGAAATAACACCGCCAACGATGACATCTTTATCATCTGGCTCGAGCAGGGAGGGTCTCCTCCAAATATTGGACAATTGAAATGTAAGATACCATTTGTAGATGGGAAAAGATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005351 GO:0005354 GO:0005355 GO:0005365 GO:0005402 GO:0005575 GO:0005623 GO:0005886 GO:0006810 GO:0006811 GO:0006812 GO:0007275 GO:0008150 GO:0008324 GO:0008643 GO:0008645 GO:0009653 GO:0009791 GO:0010015 GO:0010101 GO:0010102 GO:0010311 GO:0015075 GO:0015077 GO:0015078 GO:0015144 GO:0015145 GO:0015146 GO:0015148 GO:0015149 GO:0015166 GO:0015168 GO:0015291 GO:0015293 GO:0015294 GO:0015295 GO:0015318 GO:0015575 GO:0015576 GO:0015591 GO:0015672 GO:0015749 GO:0015750 GO:0015752 GO:0015753 GO:0015757 GO:0015791 GO:0015793 GO:0015795 GO:0015797 GO:0015798 GO:0015850 GO:0016020 GO:0022622 GO:0022804 GO:0022857 GO:0022890 GO:0032501 GO:0032502 GO:0034219 GO:0034220 GO:0042995 GO:0044464 GO:0046323 GO:0048364 GO:0048527 GO:0048528 GO:0048646 GO:0048731 GO:0048856 GO:0051119 GO:0051179 GO:0051234 GO:0055085 GO:0071702 GO:0071944 GO:0090406 GO:0090696 GO:0090697 GO:0090698 GO:0098655 GO:0098660 GO:0098662 GO:0099402 GO:0120025 GO:1901618 GO:1902600 GO:1904659 GO:1905392 GO:1905393

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Sugar_tr

Protein Analysis

65

Amino Acids

7.33

Weight (kDa)

9.3

Isoelectric Point (pI)

48.38

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0019263)

Species	Orthologous Gene IDs
malus_domestica	MD10G1079000.v1.1 MD10G1079300.v1.1 MD10G1106200.v1.1
pyrus_communis	pycom04g19060 pycom10g06230
rosa_samantha	Rh6AG125200 Rh6BG121200 Rh6CG119500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	55
Acc36I	ACCTGC	1 cut(s)	55
AccB7I	CCANNNNNTGG	1 cut(s)	152
AciI	CCGC	1 cut(s)	96
AclWI	GGATC	1 cut(s)	78
AfiI	CCNNNNNNNGG	1 cut(s)	152
AgsI	TTSAA	1 cut(s)	163
AjuI	GAANNNNNNNTTGG	1 cut(s)	29
Alw26I	GTCTC	1 cut(s)	144
AlwI	GGATC	1 cut(s)	78
Ama87I	CYCGRG	1 cut(s)	125
AoxI	GGCC	1 cut(s)	39
AvaI	CYCGRG	1 cut(s)	125
BccI	CCATC	1 cut(s)	179
BcoDI	GTCTC	1 cut(s)	144
BfuAI	ACCTGC	1 cut(s)	55
BmeT110I	CYCGRG	1 cut(s)	125
BsaI	GGTCTC	1 cut(s)	144
BsaWI	WCCGGW	1 cut(s)	49
Bsc4I	CCNNNNNNNGG	1 cut(s)	152
BseLI	CCNNNNNNNGG	1 cut(s)	152
BseRI	GAGGAG	1 cut(s)	132
BshFI	GGCC	1 cut(s)	41
BsiHKCI	CYCGRG	1 cut(s)	125
BsiSI	CCGG	1 cut(s)	50
BslI	CCNNNNNNNGG	1 cut(s)	152
BsmAI	GTCTC	1 cut(s)	144
BsnI	GGCC	1 cut(s)	41
Bso31I	GGTCTC	1 cut(s)	144
BsoBI	CYCGRG	1 cut(s)	125
Bsp143I	GATC	1 cut(s)	70
BspACI	CCGC	1 cut(s)	96
BspANI	GGCC	1 cut(s)	41
BspMI	ACCTGC	1 cut(s)	55
BspPI	GGATC	1 cut(s)	78
BspTNI	GGTCTC	1 cut(s)	144
BssMI	GATC	1 cut(s)	70
BstKTI	GATC	1 cut(s)	73
BstMAI	GTCTC	1 cut(s)	144
BstMBI	GATC	1 cut(s)	70
BsuRI	GGCC	1 cut(s)	41
BveI	ACCTGC	1 cut(s)	55
CviJI	RGCY	2 cut(s)	41, 124
CviKI_1	RGCY	2 cut(s)	41, 124
DpnI	GATC	1 cut(s)	72
DpnII	GATC	1 cut(s)	70
Eco31I	GGTCTC	1 cut(s)	144
Eco88I	CYCGRG	1 cut(s)	125
FaiI	YATR	1 cut(s)	75
HaeIII	GGCC	1 cut(s)	41
HapII	CCGG	1 cut(s)	50
HpaII	CCGG	1 cut(s)	50
Hpy188III	TCNNGA	1 cut(s)	55
Kzo9I	GATC	1 cut(s)	70
LmnI	GCTCC	1 cut(s)	52
LpnPI	CCDG	5 cut(s)	23, 50, 63, 106, 116
MalI	GATC	1 cut(s)	72
MboI	GATC	1 cut(s)	70
MfeI	CAATTG	1 cut(s)	158
MluCI	AATT	1 cut(s)	158
MnlI	CCTC	2 cut(s)	128, 153
MspI	CCGG	1 cut(s)	50
MunI	CAATTG	1 cut(s)	158
NdeII	GATC	1 cut(s)	70
PaeR7I	CTCGAG	1 cut(s)	125
PaqCI	CACCTGC	1 cut(s)	55
PflMI	CCANNNNNTGG	1 cut(s)	152
PspXI	VCTCGAGB	1 cut(s)	125
Sau3AI	GATC	1 cut(s)	70
SetI	ASST	1 cut(s)	69
Sfr274I	CTCGAG	1 cut(s)	125
SgeI	CNNG	9 cut(s)	40, 50, 62, 67, 77, 133, 137, 139, 143
SlaI	CTCGAG	1 cut(s)	125
SmlI	CTYRAG	1 cut(s)	125
SmoI	CTYRAG	1 cut(s)	125
Sse9I	AATT	1 cut(s)	158
SsiI	CCGC	1 cut(s)	96
SspI	AATATT	1 cut(s)	151
TaqI	TCGA	1 cut(s)	126
TasI	AATT	1 cut(s)	158
Van91I	CCANNNNNTGG	1 cut(s)	152
XhoI	CTCGAG	1 cut(s)	125

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.