Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr10

Orthogroup ID

OG0019263

Physical Location & Seq

Genomic Coordinates Reverse (-)

17431140 .. 17432132

Gene Structure 993 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD10G1106200.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 870 bp

ATGCTCAACATCAGCGCAATTCCCTCAGCTTTTCTAGCCCTCAGCGTTTTAGCCATGCCCGAGTCACCACGCTGGCTCGTCATGCAAGGGAGGCACAGAGACGCCAAACATGGTGAAGGTATATGGAAGGAATTGCACCTCCGCCCCACGCCGGCCGTTCGCCACATTTTAATAGCAGCCCTTGGTATCCACTTCTTTCAACAATTGTCGGGCACAGACTCTGTGGTTTTGTACAGCCTTAGGATCTTCGAGAAGGCAGGAATCACTTCTTACAATGACAAGCTACTTGCAACCGTGGCTGTTGGATTTGTTAAAACCATTGCAATTTTGGTGGCAACATTTCAAGTTGATCGGTTCGAACGCTGTATTTTGCTTTTGAGCAGCGTGGGTGGAATGGTAGTTTCTTTTACGCTGCTCGGTGTGGGTCTTACGGTCGTTGATCAATCCCACAGTAAGGTCCCGTGGGCCATCGGGTTATGCATCGGTATGGTACTATTCATCGTCGCTTTTTTCTTCATTGGGTTGGGACCTATCACGTGGGTTTACAGCTCTGAGATCTTTCTATTGCAGTTACACGCGCAAGGGTGCAGTATGGGGGTGGCTGTAAACAGGGTGACGAGCGGGGTCATCTTGATGACTTTTATTTCATTGTATAAAGCCATCACGATTGGTGGGGCATTCTTTCTTTACGCGGGAATTGTTGCGCTTAGTTGGGTCTTCTTTTATACGTTGTATCCAGAAACGCAGGGTCGATCCCTTGAAGATATGGAGGTCTTGTTTGGTAAATACCACAAGTGGAGAGAAGCCAATGCCATGCTTAACAAGACTAAGCAAGCTGATCATGGTTTTGGTGACGACAACAAGGCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005351 GO:0005354 GO:0005355 GO:0005365 GO:0005402 GO:0005575 GO:0005623 GO:0005886 GO:0006810 GO:0006811 GO:0006812 GO:0007275 GO:0008150 GO:0008324 GO:0008643 GO:0008645 GO:0009653 GO:0009791 GO:0010015 GO:0010101 GO:0010102 GO:0010311 GO:0015075 GO:0015077 GO:0015078 GO:0015144 GO:0015145 GO:0015146 GO:0015148 GO:0015149 GO:0015166 GO:0015168 GO:0015291 GO:0015293 GO:0015294 GO:0015295 GO:0015318 GO:0015575 GO:0015576 GO:0015591 GO:0015672 GO:0015749 GO:0015750 GO:0015752 GO:0015753 GO:0015757 GO:0015791 GO:0015793 GO:0015795 GO:0015797 GO:0015798 GO:0015850 GO:0016020 GO:0022622 GO:0022804 GO:0022857 GO:0022890 GO:0032501 GO:0032502 GO:0034219 GO:0034220 GO:0042995 GO:0044464 GO:0046323 GO:0048364 GO:0048527 GO:0048528 GO:0048646 GO:0048731 GO:0048856 GO:0051119 GO:0051179 GO:0051234 GO:0055085 GO:0071702 GO:0071944 GO:0090406 GO:0090696 GO:0090697 GO:0090698 GO:0098655 GO:0098660 GO:0098662 GO:0099402 GO:0120025 GO:1901618 GO:1902600 GO:1904659 GO:1905392 GO:1905393

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Sugar_tr

Protein Analysis

290

Amino Acids

31.89

Weight (kDa)

8.94

Isoelectric Point (pI)

34.11

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Sugar_tr	PF00083	40 - 260	2.5e-39	Sugar (and other) transporter

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0019263)

Species	Orthologous Gene IDs
malus_domestica	MD10G1079000.v1.1 MD10G1079300.v1.1 MD10G1106200.v1.1
pyrus_communis	pycom04g19060 pycom10g06230
rosa_samantha	Rh6AG125200 Rh6BG121200 Rh6CG119500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	621
AccII	CGCG	2 cut(s)	578, 692
AciI	CCGC	3 cut(s)	142, 621, 692
AclWI	GGATC	2 cut(s)	251, 747
AcoI	YGGCCR	1 cut(s)	153
AcvI	CACGTG	1 cut(s)	537
AcyI	GRCGYC	1 cut(s)	102
AfaI	GTAC	2 cut(s)	233, 492
AfiI	CCNNNNNNNGG	2 cut(s)	151, 454
AgsI	TTSAA	3 cut(s)	200, 344, 761
AluBI	AGCT	4 cut(s)	29, 283, 549, 836
AluI	AGCT	4 cut(s)	29, 283, 549, 836
Alw26I	GTCTC	1 cut(s)	93
AlwI	GGATC	2 cut(s)	251, 747
AlwNI	CAGNNNCTG	1 cut(s)	221
Ama87I	CYCGRG	1 cut(s)	59
AoxI	GGCC	2 cut(s)	153, 465
ApeKI	GCWGC	3 cut(s)	176, 381, 412
Asp700I	GAANNNNTTC	1 cut(s)	265
AspLEI	GCGC	3 cut(s)	17, 580, 706
AspS9I	GGNCC	3 cut(s)	457, 465, 527
AsuHPI	GGTGA	4 cut(s)	57, 125, 625, 863
AsuII	TTCGAA	1 cut(s)	357
AvaI	CYCGRG	1 cut(s)	59
AvaII	GGWCC	2 cut(s)	457, 527
AxyI	CCTNAGG	1 cut(s)	239
BaeGI	GKGCMC	1 cut(s)	215
BbrPI	CACGTG	1 cut(s)	537
BbsI	GAAGAC	1 cut(s)	709
BbvCI	CCTCAGC	2 cut(s)	25, 41
BbvI	GCAGC	3 cut(s)	188, 393, 399
BccI	CCATC	2 cut(s)	476, 668
BceAI	ACGGC	1 cut(s)	140
BciVI	GTATCC	2 cut(s)	197, 744
BclI	TGATCA	2 cut(s)	439, 838
BcoDI	GTCTC	1 cut(s)	93
BfaI	CTAG	1 cut(s)	35
BfuI	GTATCC	2 cut(s)	197, 744
BglII	AGATCT	1 cut(s)	555
BisI	GCNGC	3 cut(s)	177, 382, 413
BlsI	GCNGC	3 cut(s)	178, 383, 414
Bme18I	GGWCC	2 cut(s)	457, 527
BmeT110I	CYCGRG	1 cut(s)	59
BmgT120I	GGNCC	3 cut(s)	457, 465, 527
BmiI	GGNNCC	2 cut(s)	459, 528
BmsI	GCATC	1 cut(s)	489
BpiI	GAAGAC	1 cut(s)	709
Bpu10I	CCTNAGC	2 cut(s)	25, 41
Bpu14I	TTCGAA	1 cut(s)	357
BsaAI	YACGTR	1 cut(s)	537
BsaHI	GRCGYC	1 cut(s)	102
BsaJI	CCNNGG	3 cut(s)	181, 294, 461
BsaXI	ACNNNNNCTCC	2 cut(s)	761, 791
Bsc4I	CCNNNNNNNGG	2 cut(s)	151, 454
Bse118I	RCCGGY	1 cut(s)	151
Bse21I	CCTNAGG	1 cut(s)	239
Bse3DI	GCAATG	1 cut(s)	318
BseDI	CCNNGG	3 cut(s)	181, 294, 461
BseLI	CCNNNNNNNGG	2 cut(s)	151, 454
BseMI	GCAATG	1 cut(s)	318
BseMII	CTCAG	3 cut(s)	39, 55, 543
BseSI	GKGCMC	1 cut(s)	215
BseX3I	CGGCCG	1 cut(s)	153
BseXI	GCAGC	3 cut(s)	188, 393, 399
BsgI	GTGCAG	1 cut(s)	607
Bsh1236I	CGCG	2 cut(s)	578, 692
Bsh1285I	CGRYCG	2 cut(s)	156, 435
BshFI	GGCC	2 cut(s)	155, 467
BsiEI	CGRYCG	2 cut(s)	156, 435
BsiHKCI	CYCGRG	1 cut(s)	59
BsiSI	CCGG	1 cut(s)	152
BslFI	GGGAC	2 cut(s)	443, 540
BslI	CCNNNNNNNGG	2 cut(s)	151, 454
BsmAI	GTCTC	1 cut(s)	93
BsmBI	CGTCTC	1 cut(s)	93
BsmFI	GGGAC	2 cut(s)	443, 540
BsmI	GAATGC	1 cut(s)	677
BsnI	GGCC	2 cut(s)	155, 467
BsoBI	CYCGRG	1 cut(s)	59
Bsp119I	TTCGAA	1 cut(s)	357
Bsp1286I	GDGCHC	1 cut(s)	215
Bsp1407I	TGTACA	1 cut(s)	231
Bsp143I	GATC	6 cut(s)	243, 349, 439, 555, 752, 838
BspACI	CCGC	3 cut(s)	142, 621, 692
BspANI	GGCC	2 cut(s)	155, 467
BspCNI	CTCAG	3 cut(s)	38, 54, 544
BspFNI	CGCG	2 cut(s)	578, 692
BspLI	GGNNCC	2 cut(s)	459, 528
BspPI	GGATC	2 cut(s)	251, 747
BspT104I	TTCGAA	1 cut(s)	357
BsrBI	CCGCTC	1 cut(s)	621
BsrDI	GCAATG	1 cut(s)	318
BsrFI	RCCGGY	1 cut(s)	151
BsrGI	TGTACA	1 cut(s)	231
BssAI	RCCGGY	1 cut(s)	151
BssECI	CCNNGG	3 cut(s)	181, 294, 461
BssMI	GATC	6 cut(s)	243, 349, 439, 555, 752, 838
BssNI	GRCGYC	1 cut(s)	102
BssT1I	CCWWGG	1 cut(s)	181
Bst4CI	ACNGT	3 cut(s)	295, 433, 452
BstACI	GRCGYC	1 cut(s)	102
BstAUI	TGTACA	1 cut(s)	231
BstBAI	YACGTR	1 cut(s)	537
BstBI	TTCGAA	1 cut(s)	357
BstC8I	GCNNGC	3 cut(s)	74, 153, 834
BstDEI	CTNAG	6 cut(s)	25, 41, 239, 552, 707, 828
BstDSI	CCRYGG	2 cut(s)	294, 461
BstFNI	CGCG	2 cut(s)	578, 692
BstHHI	GCGC	3 cut(s)	17, 580, 706
BstKTI	GATC	6 cut(s)	246, 352, 442, 558, 755, 841
BstMAI	GTCTC	1 cut(s)	93
BstMBI	GATC	6 cut(s)	243, 349, 439, 555, 752, 838
BstMCI	CGRYCG	2 cut(s)	156, 435
BstMWI	GCNNNNNNNGC	4 cut(s)	35, 82, 91, 296
BstSLI	GKGCMC	1 cut(s)	215
BstUI	CGCG	2 cut(s)	578, 692
BstV1I	GCAGC	3 cut(s)	188, 393, 399
BstV2I	GAAGAC	1 cut(s)	709
BstX2I	RGATCY	2 cut(s)	243, 555
BstYI	RGATCY	2 cut(s)	243, 555
BstZI	CGGCCG	1 cut(s)	153
Bsu36I	CCTNAGG	1 cut(s)	239
BsuI	GTATCC	2 cut(s)	197, 744
BsuRI	GGCC	2 cut(s)	155, 467
BtgI	CCRYGG	2 cut(s)	294, 461
Cac8I	GCNNGC	3 cut(s)	74, 153, 834
CaiI	CAGNNNCTG	1 cut(s)	221
CfoI	GCGC	3 cut(s)	17, 580, 706
Cfr10I	RCCGGY	1 cut(s)	151
Cfr13I	GGNCC	3 cut(s)	457, 465, 527
CseI	GACGC	1 cut(s)	110
Csp6I	GTAC	2 cut(s)	232, 491
CspCI	CAANNNNNGTGG	2 cut(s)	312, 347
CviAII	CATG	5 cut(s)	55, 82, 110, 814, 842
CviQI	GTAC	2 cut(s)	232, 491
DdeI	CTNAG	6 cut(s)	25, 41, 239, 552, 707, 828
DpnI	GATC	6 cut(s)	245, 351, 441, 557, 754, 840
DpnII	GATC	6 cut(s)	243, 349, 439, 555, 752, 838
EaeI	YGGCCR	1 cut(s)	153
EagI	CGGCCG	1 cut(s)	153
EciI	GGCGGA	1 cut(s)	131
EclXI	CGGCCG	1 cut(s)	153
Eco130I	CCWWGG	1 cut(s)	181
Eco47I	GGWCC	2 cut(s)	457, 527
Eco52I	CGGCCG	1 cut(s)	153
Eco72I	CACGTG	1 cut(s)	537
Eco81I	CCTNAGG	1 cut(s)	239
Eco88I	CYCGRG	1 cut(s)	59
EcoO109I	RGGNCCY	2 cut(s)	457, 527
EcoT14I	CCWWGG	1 cut(s)	181
EcoT22I	ATGCAT	1 cut(s)	482
ErhI	CCWWGG	1 cut(s)	181
Esp3I	CGTCTC	1 cut(s)	93
FaeI	CATG	5 cut(s)	58, 85, 113, 817, 845
FaqI	GGGAC	2 cut(s)	443, 540
FatI	CATG	5 cut(s)	54, 81, 109, 813, 841
FauI	CCCGC	2 cut(s)	614, 685
FbaI	TGATCA	2 cut(s)	439, 838
Fnu4HI	GCNGC	3 cut(s)	177, 382, 413
Fsp4HI	GCNGC	3 cut(s)	177, 382, 413
FspBI	CTAG	1 cut(s)	35
GlaI	GCGC	3 cut(s)	16, 579, 705
GluI	GCNGC	3 cut(s)	177, 382, 413
HaeIII	GGCC	2 cut(s)	155, 467
HapII	CCGG	1 cut(s)	152
HgaI	GACGC	1 cut(s)	110
HhaI	GCGC	3 cut(s)	17, 580, 706
Hin1I	GRCGYC	1 cut(s)	102
Hin1II	CATG	5 cut(s)	58, 85, 113, 817, 845
Hin6I	GCGC	3 cut(s)	15, 578, 704
HinP1I	GCGC	3 cut(s)	15, 578, 704
HinfI	GANTC	3 cut(s)	62, 218, 261
HpaII	CCGG	1 cut(s)	152
HphI	GGTGA	4 cut(s)	57, 125, 625, 863
Hpy166II	GTNNAC	2 cut(s)	544, 607
Hpy188I	TCNGA	1 cut(s)	553
Hpy188III	TCNNGA	4 cut(s)	250, 631, 664, 737
Hpy8I	GTNNAC	2 cut(s)	544, 607
Hpy99I	CGWCG	1 cut(s)	506
HpyAV	CCTTC	3 cut(s)	110, 121, 247
HpyCH4III	ACNGT	3 cut(s)	295, 433, 452
HpyCH4IV	ACGT	2 cut(s)	536, 728
HpyCH4V	TGCA	7 cut(s)	85, 136, 290, 323, 480, 568, 588
HpyF10VI	GCNNNNNNNGC	4 cut(s)	35, 82, 91, 296
HpyF3I	CTNAG	6 cut(s)	25, 41, 239, 552, 707, 828
HpySE526I	ACGT	2 cut(s)	536, 728
Hsp92I	GRCGYC	1 cut(s)	102
Hsp92II	CATG	5 cut(s)	58, 85, 113, 817, 845
HspAI	GCGC	3 cut(s)	15, 578, 704
KroI	GCCGGC	1 cut(s)	151
KroNI	GCCGGC	1 cut(s)	153
Ksp22I	TGATCA	2 cut(s)	439, 838
Kzo9I	GATC	6 cut(s)	243, 349, 439, 555, 752, 838
LpnPI	CCDG	6 cut(s)	58, 165, 243, 595, 731, 750
Lsp1109I	GCAGC	3 cut(s)	188, 393, 399
LweI	GCATC	1 cut(s)	489
MaeI	CTAG	1 cut(s)	35
MaeII	ACGT	2 cut(s)	536, 728
MaeIII	GTNAC	4 cut(s)	63, 570, 613, 851
MalI	GATC	6 cut(s)	245, 351, 441, 557, 754, 840
MbiI	CCGCTC	1 cut(s)	621
MboI	GATC	6 cut(s)	243, 349, 439, 555, 752, 838
MboII	GAAGA	4 cut(s)	238, 505, 709, 773
MfeI	CAATTG	1 cut(s)	203
MflI	RGATCY	2 cut(s)	243, 555
MhlI	GDGCHC	1 cut(s)	215
MluCI	AATT	5 cut(s)	18, 131, 203, 324, 696
MlyI	GAGTC	2 cut(s)	71, 212
MmeI	TCCRAC	1 cut(s)	283
MnlI	CCTC	5 cut(s)	34, 50, 84, 149, 763
Mph1103I	ATGCAT	1 cut(s)	482
MroNI	GCCGGC	1 cut(s)	151
MroXI	GAANNNNTTC	1 cut(s)	265
MseI	TTAA	4 cut(s)	170, 312, 819, 868
MslI	CAYNNNNRTG	2 cut(s)	485, 632
MspI	CCGG	1 cut(s)	152
MunI	CAATTG	1 cut(s)	203
Mva1269I	GAATGC	1 cut(s)	677
MvnI	CGCG	2 cut(s)	578, 692
MwoI	GCNNNNNNNGC	4 cut(s)	35, 82, 91, 296
NaeI	GCCGGC	1 cut(s)	153
NdeII	GATC	6 cut(s)	243, 349, 439, 555, 752, 838
NgoMIV	GCCGGC	1 cut(s)	151
NlaIII	CATG	5 cut(s)	58, 85, 113, 817, 845
NlaIV	GGNNCC	2 cut(s)	459, 528
NmuCI	GTSAC	3 cut(s)	63, 613, 851
NsiI	ATGCAT	1 cut(s)	482
NspV	TTCGAA	1 cut(s)	357
PctI	GAATGC	1 cut(s)	677
PdiI	GCCGGC	1 cut(s)	153
PdmI	GAANNNNTTC	1 cut(s)	265
PfeI	GAWTC	1 cut(s)	261
PkrI	GCNGC	3 cut(s)	178, 383, 414
PleI	GAGTC	2 cut(s)	70, 212
PmaCI	CACGTG	1 cut(s)	537
PmlI	CACGTG	1 cut(s)	537
PpsI	GAGTC	2 cut(s)	70, 212
Ppu21I	YACGTR	1 cut(s)	537
PpuMI	RGGWCCY	2 cut(s)	457, 527
Psp5II	RGGWCCY	2 cut(s)	457, 527
PspCI	CACGTG	1 cut(s)	537
PspN4I	GGNNCC	2 cut(s)	459, 528
PspPI	GGNCC	3 cut(s)	457, 465, 527
PspPPI	RGGWCCY	2 cut(s)	457, 527
PstNI	CAGNNNCTG	1 cut(s)	221
PsuI	RGATCY	2 cut(s)	243, 555
RsaI	GTAC	2 cut(s)	233, 492
RsaNI	GTAC	2 cut(s)	232, 491
RseI	CAYNNNNRTG	2 cut(s)	485, 632
SaqAI	TTAA	4 cut(s)	170, 312, 819, 868
SatI	GCNGC	3 cut(s)	177, 382, 413
Sau3AI	GATC	6 cut(s)	243, 349, 439, 555, 752, 838
Sau96I	GGNCC	3 cut(s)	457, 465, 527
SchI	GAGTC	2 cut(s)	71, 212
SduI	GDGCHC	1 cut(s)	215
SfaNI	GCATC	1 cut(s)	489
SfuI	TTCGAA	1 cut(s)	357
SinI	GGWCC	2 cut(s)	457, 527
SmiMI	CAYNNNNRTG	2 cut(s)	485, 632
Sse9I	AATT	5 cut(s)	18, 131, 203, 324, 696
SsiI	CCGC	3 cut(s)	142, 621, 692
SspMI	CTAG	1 cut(s)	35
StyI	CCWWGG	1 cut(s)	181
TaaI	ACNGT	3 cut(s)	295, 433, 452
TaiI	ACGT	2 cut(s)	539, 731
TaqI	TCGA	3 cut(s)	249, 357, 751
TasI	AATT	5 cut(s)	18, 131, 203, 324, 696
TatI	WGTACW	1 cut(s)	231
TfiI	GAWTC	1 cut(s)	261
Tru1I	TTAA	4 cut(s)	170, 312, 819, 868
Tru9I	TTAA	4 cut(s)	170, 312, 819, 868
TseFI	GTSAC	3 cut(s)	63, 613, 851
TseI	GCWGC	3 cut(s)	176, 381, 412
Tsp45I	GTSAC	3 cut(s)	63, 613, 851
TspDTI	ATGAA	3 cut(s)	487, 505, 636
VpaK11BI	GGWCC	2 cut(s)	457, 527
XcmI	CCANNNNNNNNNTGG	1 cut(s)	325
XmnI	GAANNNNTTC	1 cut(s)	265
XspI	CTAG	1 cut(s)	35
Zsp2I	ATGCAT	1 cut(s)	482

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.